Lsi02G011910 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCTGCTGGACGCTGTCGGCGCAAAGGGAATGGAGTTGAACGGATCTGCTGACGACGATGAGAGATTTAGCAAGCTCGAACTGCTGACTGACGGATCTACATGGTGAGCTTGAATCTGGTGACTGATGGACTGCACGAAAACGGATCTGTTGATCGATGATGACGAACAGATTTGCTGACGAAATTGCATGACAACTGCGAGTCAAGGAGAGATTGGACGCCGAACGGATTTGCACGACTGGTGGATCTGCTGCTCGACGGCAACAACGGACGGCGAGAAAGGATGGGCAGCGGCAATGAGAGAGTTTTGGGGAGATGAAATTTTGTGAGAAATGAGAGAGAAGAAAGGCATAGGGAAATGAAAGAGAATTTTTTTATTAAAGAAAAGAATAAATAGATAGGTACAATGTCAGTTTTAAACTGACATTGTAGCCTCATCATTAATGTCAGTTTAAAACCGACATTAAAGATCCACTTTTTTTTTTTTTTTTAAGAAACCGACATTGTACATCTGATTTAGTTTTTTTCAACTGACATTAAAGACCAAATTTCTTGTAGTGATATGTCGAAAATGAGAATATGTATTGGGACATTTAATTTGAAAAAAGAGAGACATACATCACATTGACATTGTGTCAAGAACTAAATAACTTGTCAATCATTATTTAGTGTCAAGATTACAATACATTTGACAAATAAAAACATCAAGAGTTATCATATATGATACGTAATTAATGTCAAGAATTAATAGACTTGACGTGACACAAATGTCAAGTTCGTTAATATTCTTGACATGAAATATATATCCAAAAAATATATTTAGTTGTCCCTCTATTCTGGACATTAGACTATTTGGCGTTTTTAAAAGTGTCAAGACTATTGCTATTTGACATTCAAAAAAGCATCAAGTAACATAGTTTTATAGTAATGATGATTTGAAATGGCATACAATAAATATATACAAAATTTCAAAACAATTCAAGTGACCATAACCCCACTAAATCCACCTATGAGTACAAAGACCTAATCTACAAAAAGACTGAAATATAATAGCAATATGATGATTTTATGATTTGAATTACTCTATTCATTATTCAACATTTAAGATCAAAGTTAATTAATTTAAGAATAAATATTAATTTATAACTCTAAACTTTGAAGTTGTACAAATAAAATCTTAAACCAAGAATCGTACCAATTTAATTATTAAATTTTTGGAAGGATATAAATTTTCATTGGACTAATTTCGTATGAAATTTACATTTTGAATAAATTAAACTCTTAATTTTTTTTAAACCAATCAATTTACGTCTTTTATTATGACCACTTTTGAAAACCTTATATTAATTCTCACTAAACATGTTGGTTTAATAAAATAGATGATTAGAGTAAATGTATAGACGATTTTCAAAGATTTTTTTTAAAAATATCTAAATTGATTCATTTAGGAAAGTTAAGGGGTTTAATTGATACAAAGTTTTTTTTTCAAAACAAAACGGATATATGTATGAGGGTGTGAATTGATACATTAACAAAAGTTTAGATTTAAATTGATATACATATTAGTTCTAAGTTTAAATTGATACAATTCCTGAAGTTTATGATTAGAAATTGATGTTTTTCAATTTAAAATGCAACTAATATATAACATGACTTACAACATTAATTATAAGTTCAATCCCAATGGTGAAATGTAATTTGAATTTTCCACCCAATGTATACCATTTTCATTCACTATGTTTCAACATTTTTTTTATACATAAAAATGTATTTAAATCGAAATAGATTCATATATTTACTACCAAATAAAAAGTCAAAAAAAAAAAAAAAGCACATTAAAAACCAATCTTAGGGTAAGCTTGTTCAATCTCATAACTGAATTCGTGGCATGGCTAACTCCTCCATGGGCGGCCGGGCGCCGCATCCTCAACCCCTATCCCATCCCCATAGCCGCAACTCCTCACCCTTCCTCTGAGCCTTCGCCGCCGGCATGGTCTTCCTCCTTTTCATCGCTCTTTTCATCTTCCGCCCCATCCTCCCCATTAGTCGACTCACTTCAACTCGCCAATTTCTCCTCTGCCTCTGCCGCTGCCGCTGCCGCCTTCCCGTCCCTTATCTCCTCATGGGTTGTTGGATTTTCAGTCAACAACCCCAACAAGAAGCTCGCCATCTCATTCCAAAACCTTGAGTCCTCCATTTACTACAAAGATAACATTATCGCTCAAGCCCGAATTCACCGCTTCCTCCTCCGCCGAAGGAACTCAACGGCCATCGTCACTCCCTTCATTGCCGACTCGCCCGTCGATGAGTCGGTTTTGAATGAAATTAATGGGGACTTGGCGAATGGAGCAATTAACTTCACCGTCGTAGTTCTTGGCTATGCCAACTTCCAGATCGGTGTGTGGCGGTGGAGGGGCACCAATTTTCGGGTTCTTTGCAGCGATTTGTCTGTCGGATTCTCATCGCCGCCGAGTCCCAACGGCGGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCAATGCCAGCTACGATGA ATGGATCTGCTGGACGCTGTCGGCGCAAAGGGAATGGAGTTGAACGGATCTGCTGACGACGATGAGAGATTTAGCAAGCTCGAACTGCTGACTGACGGATCTACATGGGTAAGCTTGTTCAATCTCATAACTGAATTCGTGGCATGGCTAACTCCTCCATGGGCGGCCGGGCGCCGCATCCTCAACCCCTATCCCATCCCCATAGCCGCAACTCCTCACCCTTCCTCTGAGCCTTCGCCGCCGGCATGGTCTTCCTCCTTTTCATCGCTCTTTTCATCTTCCGCCCCATCCTCCCCATTAGTCGACTCACTTCAACTCGCCAATTTCTCCTCTGCCTCTGCCGCTGCCGCTGCCGCCTTCCCGTCCCTTATCTCCTCATGGGTTGTTGGATTTTCAGTCAACAACCCCAACAAGAAGCTCGCCATCTCATTCCAAAACCTTGAGTCCTCCATTTACTACAAAGATAACATTATCGCTCAAGCCCGAATTCACCGCTTCCTCCTCCGCCGAAGGAACTCAACGGCCATCGTCACTCCCTTCATTGCCGACTCGCCCGTCGATGAGTCGGTTTTGAATGAAATTAATGGGGACTTGGCGAATGGAGCAATTAACTTCACCGTCGTAGTTCTTGGCTATGCCAACTTCCAGATCGGTGTGTGGCGGTGGAGGGGCACCAATTTTCGGGTTCTTTGCAGCGATTTGTCTGTCGGATTCTCATCGCCGCCGAGTCCCAACGGCGGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCAATGCCAGCTACGATGA ATGGATCTGCTGGACGCTGTCGGCGCAAAGGGAATGGAGTTGAACGGATCTGCTGACGACGATGAGAGATTTAGCAAGCTCGAACTGCTGACTGACGGATCTACATGGGTAAGCTTGTTCAATCTCATAACTGAATTCGTGGCATGGCTAACTCCTCCATGGGCGGCCGGGCGCCGCATCCTCAACCCCTATCCCATCCCCATAGCCGCAACTCCTCACCCTTCCTCTGAGCCTTCGCCGCCGGCATGGTCTTCCTCCTTTTCATCGCTCTTTTCATCTTCCGCCCCATCCTCCCCATTAGTCGACTCACTTCAACTCGCCAATTTCTCCTCTGCCTCTGCCGCTGCCGCTGCCGCCTTCCCGTCCCTTATCTCCTCATGGGTTGTTGGATTTTCAGTCAACAACCCCAACAAGAAGCTCGCCATCTCATTCCAAAACCTTGAGTCCTCCATTTACTACAAAGATAACATTATCGCTCAAGCCCGAATTCACCGCTTCCTCCTCCGCCGAAGGAACTCAACGGCCATCGTCACTCCCTTCATTGCCGACTCGCCCGTCGATGAGTCGGTTTTGAATGAAATTAATGGGGACTTGGCGAATGGAGCAATTAACTTCACCGTCGTAGTTCTTGGCTATGCCAACTTCCAGATCGGTGTGTGGCGGTGGAGGGGCACCAATTTTCGGGTTCTTTGCAGCGATTTGTCTGTCGGATTCTCATCGCCGCCGAGTCCCAACGGCGGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCAATGCCAGCTACGATGA MDLLDAVGAKGMELNGSADDDERFSKLELLTDGSTWVSLFNLITEFVAWLTPPWAAGRRILNPYPIPIAATPHPSSEPSPPAWSSSFSSLFSSSAPSSPLVDSLQLANFSSASAAAAAAFPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLRRRNSTAIVTPFIADSPVDESVLNEINGDLANGAINFTVVVLGYANFQIGVWRWRGTNFRVLCSDLSVGFSSPPSPNGGSGQLVGGSRQCQLR Homology
BLAST of Lsi02G011910 vs. ExPASy TrEMBL
Match: A0A5D3E5N0 (Protein YLS9 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001820 PE=4 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 2.3e-60 Identity = 125/161 (77.64%), Postives = 138/161 (85.71%), Query Frame = 0
BLAST of Lsi02G011910 vs. ExPASy TrEMBL
Match: A0A1S3CJS5 (uncharacterized protein LOC103501757 OS=Cucumis melo OX=3656 GN=LOC103501757 PE=4 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 2.3e-60 Identity = 125/161 (77.64%), Postives = 138/161 (85.71%), Query Frame = 0
BLAST of Lsi02G011910 vs. ExPASy TrEMBL
Match: A0A0A0LT76 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G169920 PE=4 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 8.7e-52 Identity = 113/160 (70.62%), Postives = 127/160 (79.38%), Query Frame = 0
BLAST of Lsi02G011910 vs. ExPASy TrEMBL
Match: A0A2I4HLK5 (uncharacterized protein At1g08160-like OS=Juglans regia OX=51240 GN=LOC109019244 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 3.0e-28 Identity = 77/161 (47.83%), Postives = 103/161 (63.98%), Query Frame = 0
BLAST of Lsi02G011910 vs. ExPASy TrEMBL
Match: A0A2P5BEN8 (Late embryogenesis abundant protein OS=Trema orientale OX=63057 GN=TorRG33x02_323820 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 4.5e-24 Identity = 68/161 (42.24%), Postives = 99/161 (61.49%), Query Frame = 0
BLAST of Lsi02G011910 vs. NCBI nr
Match: XP_008463664.1 (PREDICTED: uncharacterized protein LOC103501757 [Cucumis melo] >KAA0035579.1 protein YLS9 isoform X2 [Cucumis melo var. makuwa] >TYK30956.1 protein YLS9 isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 242.3 bits (617), Expect = 4.7e-60 Identity = 125/161 (77.64%), Postives = 138/161 (85.71%), Query Frame = 0
BLAST of Lsi02G011910 vs. NCBI nr
Match: KGN65002.2 (hypothetical protein Csa_022841 [Cucumis sativus]) HSP 1 Score: 139.4 bits (350), Expect = 4.3e-29 Identity = 71/100 (71.00%), Postives = 80/100 (80.00%), Query Frame = 0
BLAST of Lsi02G011910 vs. NCBI nr
Match: XP_018857049.1 (uncharacterized protein At1g08160-like [Juglans regia] >KAF5447433.1 hypothetical protein F2P56_032987 [Juglans regia]) HSP 1 Score: 135.6 bits (340), Expect = 6.2e-28 Identity = 77/161 (47.83%), Postives = 103/161 (63.98%), Query Frame = 0
BLAST of Lsi02G011910 vs. NCBI nr
Match: XP_042956465.1 (uncharacterized protein At1g08160 [Carya illinoinensis] >KAG6632036.1 hypothetical protein CIPAW_13G131000 [Carya illinoinensis] >KAG6682257.1 hypothetical protein I3842_13G129700 [Carya illinoinensis] >KAG7950481.1 hypothetical protein I3843_13G114700 [Carya illinoinensis]) HSP 1 Score: 132.5 bits (332), Expect = 5.3e-27 Identity = 75/161 (46.58%), Postives = 102/161 (63.35%), Query Frame = 0
BLAST of Lsi02G011910 vs. NCBI nr
Match: KAG2674349.1 (hypothetical protein I3760_13G129800 [Carya illinoinensis]) HSP 1 Score: 132.1 bits (331), Expect = 6.9e-27 Identity = 74/161 (45.96%), Postives = 102/161 (63.35%), Query Frame = 0
BLAST of Lsi02G011910 vs. TAIR 10
Match: AT4G05220.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family ) HSP 1 Score: 46.2 bits (108), Expect = 4.6e-05 Identity = 27/104 (25.96%), Postives = 52/104 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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