Lsi02G011700 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G011700
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Locationchr02: 14342801 .. 14348702 (-)
RNA-Seq ExpressionLsi02G011700
SyntenyLsi02G011700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATTTAACTCAATAAGCAAAGATTTTCCTTCTTCCCCTCACTCTCTCGTGCTCCACCGAGTCGACCTTTCTCCTCCGTTTCAGCATCTCAGTGTCGTCGCCGCGTCTCTTCCGTTGCTGCCGCCGCCGCCGTCTTTCTTCCGCTCGTGCCGCCGCATCCTCCCTTCGAGCTGGTTTTCACATTTCTGATTTGCACTGATTTTCTACTACTTTGTGGTTACTGGTATTCTCCCGATCTCCATCTATGCATTTATTCTCACATGAAAACACAAATTAGGAATTGTCTAATGCAATAATGGAGGAATTGTTTTGATGTATATATTACTTTTTTTTTTGTTAACAAAAGTCGAATAGCAACGGAAAACAAAAAACAGCCTTGCAGGGCTTTTCGGACTTCCGTGTTCTACCCCCTGCATATGTCTGTCAATTTGGGATTTCATCATCTGTATATTTCTTTCGTCTCTGCTGGAATTTGCTCTGTTTTCTGCCACTATGAATTTTCCAGCAACTACCTCCTTTATTTTTCAGAGAATCATTCCAAGCAATATAGTGCATTTATATAATTCAATTCTCTTATAATCCATAGCTTGTAGGAGTTATTTTATTTGTAGATTTTCAGGTTATAGTTGGGGAGGGAGAAGACAATAATCACTCATACTTCGAATTTACTTGAAATAAGAGGGTTATGGCCGTCTATGTGCTTTGTACTTCATGTACCTTGATGTAAAAAGTTACAGAAAATGTTCAAGGTAAAATTAGCGTAGTTTAGAAAGGTGGAGGGATTAAAAGTGACCCAGAAGATTCTCCACTTTAGCTACTTTTATGAACAGGATCAATGAATTTTACCTTCTCATTGAATCCTATCTGAAACCTGTGATTGGCTGTGGCTCATAATTTGATGTTCGTTCCAAAATTTTATTTGAATTCATCTGATTAGGAAATGCTGCTAGTCATGGAAATTTGAATTATAATTCATTATTTCAATAATTGAAGTTTAAGATGTTTTTAAATTGCTTGAGGCAAATTTATGAGGTTAACTGATATGCTAAAACATTCAAAGAATGTTGTTTTTATGTAAATAATTTCATTTTGGGTATCAATGGCTTAAGTTTTACAAAGTGAGATGTTAACAATAACAGTTATTAGGACACTATTTTAGCTTTATTTACTTATTCTTTTAATTTTATTTTCTTCACAGATTAGTTTGTTTAAATTCCTTCATAGCTGTGTGATTTATCACAGCCGCCAGCACAGTTCTTGATGGATCCGCCAACCCAGAATACTTCATTGCAACGCCTTCAAAATGTGGAGAAGGTTGGAATAACTTTCCATACCTTAAATATTTTGTTTCTAGTTCTTTGCACGGTCTTTATTGTAGCACATTCTTTTTTACCAACATATGTGTTTCATTCCTGCAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAATAATCATTGCAGTGAGTTCATGCAATTCATCAAGGTGAGCCCTCTATGTTTGACAGTCGTTCTTCACGTCAAATGATGTTTCAAATTTAGATAGGTTTATTGCCGTGAGTTGGGTGCTGTGTTTAATGACTTTTGTACTTATTCGTTGGGTTTTATTCTTAAACTTTTTTCTTTCTCGATAGGTTATTGTTTGTTGGGTTCCTTCCTCGTTGGGTTTTATTCTTAAACCTTTTTCTTTCTCAATAGGTTAGGGTCTGTTGGGTTCCTTCTGTGCTGTCACTTTTGTATGTCCAACTTTTTTTTTTCCCTTGTTGCAATTGTTTATTTTTACAATTTTGATTGACCCTACTTTCTTCTTTCATTTTTTTTTCTCCATGAAAGTTGGGTTCCTTTGGGGCAGTCACTTTTGTAGGTGCAATTTGGCAATAGTTTTTTGTATTTTTGTTTGTCTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTTAATTTTAAAGTTTGATTCTTCGATCAAATGACCTTTCAAGTATAGGTTTAAGGGTTCTAGCTAACATCCTTGGACTACTATTGCTCGAGGTTTTCCTTTGTTTTCTTAGTTTGTTAATTGTTTGATGGGGATGGTGCTAGCAATTATATTTTGGAGGATACTTGGGTGGTGAAAAACCCCCTTGTGCTCTATTTCCTCAACTCTATCACTTGTTAGATAGAGGATGCATTCAATAGCCTTTGTCTTGCCCTCTTTTGATATATCATTCTTGTTGTTCCTTAGTTTTCATTGTTCCTTTTAGGTTGTTGGCCTTCTTTCTATTGTTTCTGACCAAGTGTTCCATTATGGGAGAAGGGACTCCAACTCCAAGTTTTGGGCTCCCAAGCGGCTCAGGATTTCTCTTGTAACTCATTTTTTCCATATTCTTTGCTCCCCTCCTCTCTGTTTGGGTGCCTTCGCATTCTCCTCTCTTTGGCAGGTTAAAATTCCTAGAAAAGTAAAAGTCTTTGTTTGGCAAGTTTTGGATGGGAGAGTGAACACACAAGATCGTCTCCAAAGACATTGATCTATAGTGCCACAGCTGCAATAGTACATTCTTTGTTGGAAGGAAGAGGACATTGATTATCTTTTGTGGGATTGTCCTTTTGCTTTATCCCTTTGGAGTCGGTTTTTCAGGACTTTTGGGTTGCTTTGGCAATAGGGGTTGCTCCTCTTTGATTGAGGAGGTGCTTATAAATCCTGCTTTCCATTTATAAAGGAAGAGTTTTGTGGCAAGGTTGCTTTTTTTTGGCTATTTTGTGGGGAATTCGGATGGAGAAGAACAATAGGATTTTTAGAGGGTCTAAGAGATCTGGAGATGAGCCCTGGGAGTTGGTTAGGTTTAATTTTTCATTATGGGCTTCCGTTATTCAAGCTTTTTGTAATTACTAGCATGGTCTCATTCTTTTAGATTGGAATCCTTTCTTGTATTTGGGCTGAGGCTGCTTTTGTTTTGTTTTTTTCTCTTTTTTTTTGGTATGCCCTTCTACCTTCTTTCATTCTTCTCAATGAAAGCTTGGTTCCTTATATTAAAAGGAAAAAAAAAATGATCTTTCAAGTTTGGATTTGAAACTGGGTATTGATGTATAATCTGGTAAGGCTTCATTTTTTAAATTCATTTTTCTGTCAATTCAAGCATGTAATGGATTTACATGGTAACTTCACTGGTTTACAAAAATTTGAACTTTGATTAATTGTTGTTTTTAAATAATGTTATTATATTAAATTTAATCCTATTAGAAGTCCAGATAAAATTTTATTACAAAAATTGCTCTCCCTCGTATCTGGTTCCTGCCAGGAAAAATATGGAATGATTGTGTTAGAGTATTACTGGGAAACATTGCGATATTGTTAGTGACATAATGCTTGTTAATTTGTTGTTAGTTTGTTAGGGTGAGTTGATTGGGAGTTAGGGAGTGTAGAGGAGGGGTATTGTTGCTGAATGATATTAATTTGTTAGCATTTGGTTCTCATAATCGAGATCCTATTCCTAGCAGATTGTAGAGAATAATAAAAAAATAATTATTTAGTGGTTGTTATGCTTATTTTTAGTATTGTTAAAGATGGGGGCATCATTATCCGGATTTTGTGTTTCATAGGCAACAATGATAACTTCTAATATTTAATTATAAGTGAAGAGTATGTCTGGATGTATTTTCTTTTTAATATTCCACAACTCTCAACTCTCAACTCTCAATAGTTATCTAATTGGCTACATGTCAAAATTACTTTAAAAAATCTCGAAAGCACTCCCCTTTTCTCTTTTTGGAAGAAGATGCATGATAGTTTTCTCTCTCTCACAAGTAAAGTAGATGTTTCATTTAAAAGTGTCTCAATATAATCCTAAATTTCACCTAAATCTCTTTGAATTATATCTGAGGAATAATGTGACACCTTTTTCTCCTTGAAATCAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCGTTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGCATATATGATTTCGAAGTTAGATGGAATGAAACAAACTATTGATGAATATCAAGTGAAAATGGAAGATTGAGGCACATGTCCTAGTGTGCTGCTAATCTAACTCTGCCATTTTTCCAATAATACGGGGTCGTAGAAACGAAAGGTTGGAGGGGAACTTCAGTCATGTATGTATATGATCTATCTCTGGTAGAGCTGATAGCATCCACTTTTGATTGTCGATTCATACCAAGATCCTGCTGTATTCTTAGTAAATCTCTTTTACTATCCTATTATTATCCAAGTTTCTTTATATCAATTTCGAGATGATTGATCCAAATCCAGATAGATCTTCTATTTTAAGGGATGACTAAACTATTCATTGTTTTCCCTTTACATGTATGGCCTTTTCTGTATTTGATATAGGTCATGTCTTATTGGCTGTGTGCATTTCTTTTATTTGTTTGTCACCTGCTCAACAAAGTGAAGTCTTCATGTCTGAGTTATGCTTAGTCTGCTTTTATCATTTTTATGTGTTCTTGAGCCAAAATAGGAGTTGATTCTTCGAAGGTTTTGATTATCATCGAAGATATTTTGGAGATGAGGAAAACAAAAGCAAAGGAGAGACACTGCTATCGTCCAAGTTTAAGAACAATATTCTCCCATTTCTCTTTCTATTTTTATGTATATTTATTATTATTATTATTATTTTTAAATTTTGAAAAGACCATAGCCTATGGTCCATAGGTATTCTCCTACCAAAAAGTATCAAGAACATTCTGTACCATGCCTACATCTTAGGATATGAAAAGTTCACTGGCTTACGACTTCCTTTTGAGAGAATATTAGCAACACACTGTGTATACATACGCTTTGTCTGGAGGATGTTTTTTTTTTTTTTTTAAAAATTATTATTATTATTATTTATGTATTGAAGCCTTATGTTTGTCACATACTATATAGAGTTCTTTTGTCATGCAACTATTAGCAAGGAGCTTCTAGTGAGTTTAATGACTTGCATCAGCAAATTGACGTATGGGAATAAGTTTCAACTTTATAATAGAAACGTAATTGACATCCTTAAGAACATTCTACAACTTGTATTACTATCCATACATACATTTCTAATGCTTGTTTTCCTTTTAGATATTTGAATTCCTTATTTTTACAGTCATGATTGTCTATTGCGCATCAATACTTTCCTTTAAAGTTACATGAATCGATGTACGATATCTATTACTTGTCATCACATGTTTGTATCTTTAGAATTCAAAGACAGTTGTACAACCTATAGAACAAATCCTCTTCAAGTAAGATCATCAATATCTCATTCACTAGGATTCTTGACAATCAATTTCATAATCATCTCTTTGCTCGTCTTTCCACTTTCTATACTATCTTTTCTGTGTTCTATTTTATTACAATAATTGAACGTAGTGACTTTGTCATTCGAACGTTTTTACTTCTTTGCTTACTTTTTCATTAAGTTGATTAACAATTATTATCTTTGTTTGGTGTTCCTTTGACAGGAGATCTGTGTTGAAGCCTACCTAAATTGAAGGGAAGAAGAAAATAAGAAATGATGGGAAGAGGGAAAGAGGGAAAGAGAAAGGTGGACAAATGGTGTATAAACTTAAGATGGGACCTACTTTTGTTTAATTTGGATTTGAATATCTCACCTATTTTTGGGTTATGTATTAAGTTTGCCATGTTAGCTTGTTGAACACATTAGTATTGACATGTCACCTAATTACATAGTTTAGTTTCCTTTCTATTGGAGGGGACAATTATTATGTTAGCTCAAAAGGACCACTAGAAAACTATTCCATATACTCCAGGACCAAAAGAGACACAAGAAGAAAAAATAAAACTCTAA

mRNA sequence

AAAATTTAACTCAATAAGCAAAGATTTTCCTTCTTCCCCTCACTCTCTCGTGCTCCACCGAGTCGACCTTTCTCCTCCGTTTCAGCATCTCAGTGTCGTCGCCGCGTCTCTTCCGTTGCTGCCGCCGCCGCCGTCTTTCTTCCGCTCGTGCCGCCGCATCCTCCCTTCGAGCTGGTTTTCACATTTCTGATTTGCACTGATTTTCTACTACTTTGTGGTTACTGATTAGTTTGTTTAAATTCCTTCATAGCTGTGTGATTTATCACAGCCGCCAGCACAGTTCTTGATGGATCCGCCAACCCAGAATACTTCATTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAATAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCGTTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGCATATATGATTTCGAAGTTAGATGGAATGAAACAAACTATTGATGAATATCAAGTGAAAATGGAAGATTGAGGCACATGTCCTAGTGTGCTGCTAATCTAACTCTGCCATTTTTCCAATAATACGGGGTCGTAGAAACGAAAGGTTGGAGGGGAACTTCAGTCATGTATGTATATGATCTATCTCTGGTAGAGCTGATAGCATCCACTTTTGATTGTCGATTCATACCAAGATCCTGCTGTATTCTTAGAGATCTGTGTTGAAGCCTACCTAAATTGAAGGGAAGAAGAAAATAAGAAATGATGGGAAGAGGGAAAGAGGGAAAGAGAAAGGTGGACAAATGGTGTATAAACTTAAGATGGGACCTACTTTTGTTTAATTTGGATTTGAATATCTCACCTATTTTTGGGTTATGTATTAAGTTTGCCATGTTAGCTTGTTGAACACATTAGTATTGACATGTCACCTAATTACATAGTTTAGTTTCCTTTCTATTGGAGGGGACAATTATTATGTTAGCTCAAAAGGACCACTAGAAAACTATTCCATATACTCCAGGACCAAAAGAGACACAAGAAGAAAAAATAAAACTCTAA

Coding sequence (CDS)

ATGGATCCGCCAACCCAGAATACTTCATTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAATAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCGTTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGCATATATGATTTCGAAGTTAGATGGAATGAAACAAACTATTGATGAATATCAAGTGAAAATGGAAGATTGA

Protein sequence

MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDEYQVKMED
Homology
[Close]
BLAST of Lsi02G011700 vs. ExPASy Swiss-Prot
Match: Q6ID77 (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana OX=3702 GN=MED11 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-45
Identity = 83/111 (74.77%), Postives = 101/111 (90.99%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDEY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KL Y++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]
BLAST of Lsi02G011700 vs. ExPASy TrEMBL
Match: A0A1S3B5G7 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 GN=LOC103486032 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.3e-59
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPP QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDEYQVKMED 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISKLDGMKQTID+YQVKMED
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMED 117

[Close]
BLAST of Lsi02G011700 vs. ExPASy TrEMBL
Match: A0A6J1EPJ1 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.4e-59
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDEYQVKMED 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISKLDGMKQTIDEYQVKMED
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMED 117

[Close]
BLAST of Lsi02G011700 vs. ExPASy TrEMBL
Match: A0A6J1CKY4 (Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX=3673 GN=LOC111012572 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDEYQVKMED 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISKLDGMKQTIDEYQVK+ED
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVED 117

[Close]
BLAST of Lsi02G011700 vs. ExPASy TrEMBL
Match: A0A6J1I6T5 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111471674 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57
Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDEYQVKMED 118
           VTLRDEIKSACEYRPFEKCDYSSRI NELCCKKL YMI KLDGMKQTIDEYQVKMED
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQVKMED 117

[Close]
BLAST of Lsi02G011700 vs. ExPASy TrEMBL
Match: A0A0A0L450 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=3659 GN=MED11 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.2e-54
Identity = 111/139 (79.86%), Postives = 114/139 (82.01%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 60
           MDPP  NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMI 118
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YM+
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]
BLAST of Lsi02G011700 vs. NCBI nr
Match: XP_008442051.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_008442052.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_016899531.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 236.9 bits (603), Expect = 8.9e-59
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPP QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDEYQVKMED 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISKLDGMKQTID+YQVKMED
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMED 117

[Close]
BLAST of Lsi02G011700 vs. NCBI nr
Match: XP_022927640.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >XP_022927641.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >KAG6583673.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDEYQVKMED 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISKLDGMKQTIDEYQVKMED
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMED 117

[Close]
BLAST of Lsi02G011700 vs. NCBI nr
Match: XP_023520392.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520393.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDEYQVKMED 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISKLDGMKQTIDEYQVKMED
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMED 117

[Close]
BLAST of Lsi02G011700 vs. NCBI nr
Match: XP_022142440.1 (mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP_022142441.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia])

HSP 1 Score: 234.6 bits (597), Expect = 4.4e-58
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDEYQVKMED 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISKLDGMKQTIDEYQVK+ED
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVED 117

[Close]
BLAST of Lsi02G011700 vs. NCBI nr
Match: XP_038894867.1 (mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida] >XP_038894868.1 mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida])

HSP 1 Score: 233.8 bits (595), Expect = 7.6e-58
Identity = 114/117 (97.44%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD PTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDLPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDEYQVKMED 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKL YMISKLD MKQTIDEYQVKMED
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDAMKQTIDEYQVKMED 117

[Close]
BLAST of Lsi02G011700 vs. TAIR 10
Match: AT3G01435.1 (Expressed protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-46
Identity = 83/111 (74.77%), Postives = 101/111 (90.99%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLAYMISKLDGMKQTIDEY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KL Y++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

The following BLAST results are available for this feature:
BLAST of Lsi02G011700 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6ID771.5e-4574.77Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana O... [more]
BLAST of Lsi02G011700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B5G74.3e-5997.44Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 G... [more]
A0A6J1EPJ17.4e-5998.29Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=... [more]
A0A6J1CKY42.1e-5897.44Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX... [more]
A0A6J1I6T51.8e-5796.58Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=36... [more]
A0A0A0L4504.2e-5479.86Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=365... [more]
BLAST of Lsi02G011700 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442051.18.9e-5997.44PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]... [more]
XP_022927640.11.5e-5898.29mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita mos... [more]
XP_023520392.11.5e-5898.29mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pep... [more]
XP_022142440.14.4e-5897.44mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP... [more]
XP_038894867.17.6e-5897.44mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida] >XP_0... [more]
BLAST of Lsi02G011700 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01435.11.1e-4674.77Expressed protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019404Mediator complex, subunit Med11PFAMPF10280Med11coord: 8..112
e-value: 5.2E-14
score: 52.9
IPR019404Mediator complex, subunit Med11PANTHERPTHR22890UNCHARACTERIZEDcoord: 1..114
NoneNo IPR availableGENE3D1.10.287.3490coord: 7..75
e-value: 1.1E-6
score: 31.0
NoneNo IPR availablePANTHERPTHR22890:SF2MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G011700.1Lsi02G011700.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0016592 mediator complex
molecular_function GO:0003712 transcription coregulator activity