Lsi02G011030 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G011030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	agamous-like MADS-box protein AGL62
Location	chr02: 12570648 .. 12571463 (+)
RNA-Seq Expression	Lsi02G011030
Synteny	Lsi02G011030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCTTATAAAAATCATGGGACCGCCCTCCGGAAAGTACGTCGACTCCGTCTCTGAATTTCAACGGTGACTCCCTCTCTGAAATTGTAGAGATAACTTGACGATGAAGAAAACTTTAGGGCGTCGTAAGATTGAGATCAAAAAGCTTGAGAAGAAGAGTACACAACAAGTTACCTTCTCAAAACGCCGTGCCGGACTTTTCAACAAGGCCGCCGAGCTTTCTGTTCTTTGCAGTGCTGAGATCGCAATCCTCATCTTCTCTTCCAACGGCAAAATCTATTCATTCGGCCATCCCAATGTTGACGCTCTCCTCGATCGCTTTCTCACCGGAAATTTTGTTCCGCCCAAGCCGGCGGAGGCCTACCTTCCTCTGGCGGAGTTGAATCGTGATTTCTCTGAAGCGGAAGCCGAATTTGAGATCGAGAAGAGGCGTGCGGCGGAGAGATTGAGGAATACCGACCGGTTTTGGTGGGATGATCCGCTGGAACATATGAAAATCGACGAGTTGAAGCCATTCCGTTCTTCATTGCTCGAACTCAGAGCAAATGTGGCTGAGAGATTGGAGAAATTTCCGGCGATGAGAATGGGAGATCCATCGATTGACCTAGCCGGAAACCTCCAATGGCCTCAACCGTCGTCGATTCACCTTGCCGGAAACAACCAATGTCCGCCGTCGTTATCTAACCTGCCTGGAAGCCACTCTGTGGCGATGGGAAGTGGAGATTCTGAATGTGGGTTAGGGTTTTTGGCTGGAAATTACCACTCTGTGGCGATGGGAATTACTGGAGATTCTGAATTTGGGTTAGGGTTTCAATAA

mRNA sequence

CCGCTTATAAAAATCATGGGACCGCCCTCCGGAAAGTACGTCGACTCCGTCTCTGAATTTCAACGAGATAACTTGACGATGAAGAAAACTTTAGGGCGTCGTAAGATTGAGATCAAAAAGCTTGAGAAGAAGAGTACACAACAAGTTACCTTCTCAAAACGCCGTGCCGGACTTTTCAACAAGGCCGCCGAGCTTTCTGTTCTTTGCAGTGCTGAGATCGCAATCCTCATCTTCTCTTCCAACGGCAAAATCTATTCATTCGGCCATCCCAATGTTGACGCTCTCCTCGATCGCTTTCTCACCGGAAATTTTGTTCCGCCCAAGCCGGCGGAGGCCTACCTTCCTCTGGCGGAGTTGAATCGTGATTTCTCTGAAGCGGAAGCCGAATTTGAGATCGAGAAGAGGCGTGCGGCGGAGAGATTGAGGAATACCGACCGGTTTTGGTGGGATGATCCGCTGGAACATATGAAAATCGACGAGTTGAAGCCATTCCGTTCTTCATTGCTCGAACTCAGAGCAAATGTGGCTGAGAGATTGGAGAAATTTCCGGCGATGAGAATGGGAGATCCATCGATTGACCTAGCCGGAAACCTCCAATGGCCTCAACCGTCGTCGATTCACCTTGCCGGAAACAACCAATGTCCGCCGTCGTTATCTAACCTGCCTGGAAGCCACTCTGTGGCGATGGGAAGTGGAGATTCTGAATGTGGGTTAGGGTTTTTGGCTGGAAATTACCACTCTGTGGCGATGGGAATTACTGGAGATTCTGAATTTGGGTTAGGGTTTCAATAA

Coding sequence (CDS)

CCGCTTATAAAAATCATGGGACCGCCCTCCGGAAAGTACGTCGACTCCGTCTCTGAATTTCAACGAGATAACTTGACGATGAAGAAAACTTTAGGGCGTCGTAAGATTGAGATCAAAAAGCTTGAGAAGAAGAGTACACAACAAGTTACCTTCTCAAAACGCCGTGCCGGACTTTTCAACAAGGCCGCCGAGCTTTCTGTTCTTTGCAGTGCTGAGATCGCAATCCTCATCTTCTCTTCCAACGGCAAAATCTATTCATTCGGCCATCCCAATGTTGACGCTCTCCTCGATCGCTTTCTCACCGGAAATTTTGTTCCGCCCAAGCCGGCGGAGGCCTACCTTCCTCTGGCGGAGTTGAATCGTGATTTCTCTGAAGCGGAAGCCGAATTTGAGATCGAGAAGAGGCGTGCGGCGGAGAGATTGAGGAATACCGACCGGTTTTGGTGGGATGATCCGCTGGAACATATGAAAATCGACGAGTTGAAGCCATTCCGTTCTTCATTGCTCGAACTCAGAGCAAATGTGGCTGAGAGATTGGAGAAATTTCCGGCGATGAGAATGGGAGATCCATCGATTGACCTAGCCGGAAACCTCCAATGGCCTCAACCGTCGTCGATTCACCTTGCCGGAAACAACCAATGTCCGCCGTCGTTATCTAACCTGCCTGGAAGCCACTCTGTGGCGATGGGAAGTGGAGATTCTGAATGTGGGTTAGGGTTTTTGGCTGGAAATTACCACTCTGTGGCGATGGGAATTACTGGAGATTCTGAATTTGGGTTAGGGTTTCAATAA

Protein sequence

PLIKIMGPPSGKYVDSVSEFQRDNLTMKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSFGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTDRFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQWPQPSSIHLAGNNQCPPSLSNLPGSHSVAMGSGDSECGLGFLAGNYHSVAMGITGDSEFGLGFQ

Homology

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BLAST of Lsi02G011030 vs. ExPASy Swiss-Prot
Match: Q9FKK2 (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-27
Identity = 65/169 (38.46%), Postives = 106/169 (62.72%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           +KK+ GR+KIE+ K++ +S  QVTFSKRR+GLF KA+EL  LC AE+AI++FS   K++S
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 87  FGHPNVDALLDRFLTGNFVPP--------KPAEAYLPLAELNRDFSEAEAEFEIEKRRAA 146
           FGHPNVD+++DRF+  N +PP        +       + +LN   ++  ++ E EK++  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 147 E--RLRNTDRF---WWDDPLEHMKIDELKPFRSSLLELRANVAERLEKF 183
           E  ++R   +    WW+DP+E + + +L+ F+ +L  L+  V     +F
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRF 170

[Close]

BLAST of Lsi02G011030 vs. ExPASy Swiss-Prot
Match: Q4PSU4 (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.8e-24
Identity = 66/166 (39.76%), Postives = 103/166 (62.05%), Query Frame = 0


Query: 28  KKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSF 87
           K+++GR+KI + K++K+S +QVTFSKRRAGLF KA+EL  LC AEI I++FS   K +SF
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 88  GHPNVDALLDRFLTGNFVPPKPAEAY--LPLA--ELNRDFSEAEAEFEIEKRRA------ 147
           GHP+V+++LDR+++ N +    ++     P A  ELN   +   +E E EK++       
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 148 -AERLRNTDRFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKF 183
             E +R +   WW+ P+E M + +L+  + +L ELR  V   +  F
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASF 224

[Close]

BLAST of Lsi02G011030 vs. ExPASy Swiss-Prot
Match: O80807 (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-23
Identity = 63/138 (45.65%), Postives = 87/138 (63.04%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           +KKTLGRRK+EI K+ K+S  QVTFSKR+AGLF KA+E   LC A+IA+++FS  GK++S
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 87  FGHPNVDALLDRF----LTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLR 146
           FGHPNVD LLD F    +  N      +   L +  LN+ ++E +AE E E++    R +
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 147 ------NTDRFWWDDPLE 155
                 N + +W   PLE
Sbjct: 122 NERENENAEEWWSKSPLE 139

[Close]

BLAST of Lsi02G011030 vs. ExPASy Swiss-Prot
Match: Q9LMM8 (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.7e-21
Identity = 64/161 (39.75%), Postives = 87/161 (54.04%), Query Frame = 0


Query: 28  KKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSF 87
           +K LGRRKIE+ K+  +S  QVTFSKRR+GLF K +EL  LC AEIAI++FS +GK YSF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 88  GHPNVDALLD----RFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAA----- 147
           GHPNV+ LLD    R +  N      +   L +  LN   +E  AE E E+         
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 148 ERLRNTDRFWWDDPLEHMKIDELKPFRSSLLELRANVAERL 180
           ER       WW +    + + +    +  L  L+  V E++
Sbjct: 123 ERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKV 163

[Close]

BLAST of Lsi02G011030 vs. ExPASy Swiss-Prot
Match: O64703 (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-17
Identity = 55/170 (32.35%), Postives = 93/170 (54.71%), Query Frame = 0


Query: 31  LGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSFGHP 90
           +GRRKI+++ ++  +T+QVTFSKRR GLF KA+EL+ LC+AE+ I++FS  GK +S+G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 91  NVDALLDRFL-------------TGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRR- 150
           N+D++ +RF+             +GN+ P         L  L+        E E EK R 
Sbjct: 61  NLDSVAERFMREYDDSDSGDEEKSGNYRP--------KLKRLSERLDLLNQEVEAEKERG 120

Query: 151 --AAERLRNTDRFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPA 185
             + E+L +     + + +E + +DEL  ++  L  +   +  ++    A
Sbjct: 121 EKSQEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

[Close]

BLAST of Lsi02G011030 vs. ExPASy TrEMBL
Match: A0A5D3CLQ1 (Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001380 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 5.5e-78
Identity = 158/205 (77.07%), Postives = 177/205 (86.34%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+LGRRKIEIKKL+KKSTQQVTFSKRRAGLFNKAAELS+LC AEIA+L+FSS GKIY+
Sbjct: 1   MKKSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYT 60

Query: 87  FGHPNVDALLDRFLTG-NFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTD 146
           FGHPNVDALLDRFLTG N VPPKPAEAYLP+AELNRD S+AEAEFEIEKRRAAER RN++
Sbjct: 61  FGHPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKRRAAERSRNSE 120

Query: 147 RFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQWPQPSS 206
           RFWWD+PLE MKIDELK FRSSL+ELRANV ERLEK        PSID+A ++QWP+ SS
Sbjct: 121 RFWWDEPLESMKIDELKRFRSSLVELRANVVERLEKIEDRHCVTPSIDIAESIQWPETSS 180

Query: 207 IHL-AGNNQCPPSLSNLPGSHSVAM 230
           I L AGNN C PS  ++  + SVAM
Sbjct: 181 IQLAAGNNHCLPSF-HMAENRSVAM 204

[Close]

BLAST of Lsi02G011030 vs. ExPASy TrEMBL
Match: A0A1S3CAA4 (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103498214 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 5.5e-78
Identity = 158/205 (77.07%), Postives = 177/205 (86.34%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+LGRRKIEIKKL+KKSTQQVTFSKRRAGLFNKAAELS+LC AEIA+L+FSS GKIY+
Sbjct: 1   MKKSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYT 60

Query: 87  FGHPNVDALLDRFLTG-NFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTD 146
           FGHPNVDALLDRFLTG N VPPKPAEAYLP+AELNRD S+AEAEFEIEKRRAAER RN++
Sbjct: 61  FGHPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKRRAAERSRNSE 120

Query: 147 RFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQWPQPSS 206
           RFWWD+PLE MKIDELK FRSSL+ELRANV ERLEK        PSID+A ++QWP+ SS
Sbjct: 121 RFWWDEPLESMKIDELKRFRSSLVELRANVVERLEKIEDRHCVTPSIDIAESIQWPETSS 180

Query: 207 IHL-AGNNQCPPSLSNLPGSHSVAM 230
           I L AGNN C PS  ++  + SVAM
Sbjct: 181 IQLAAGNNHCLPSF-HMAENRSVAM 204

[Close]

BLAST of Lsi02G011030 vs. ExPASy TrEMBL
Match: A0A0A0LW53 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G181400 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.5e-67
Identity = 139/192 (72.40%), Postives = 158/192 (82.29%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+ GRRKIEIK+L+K +T+QVTFSKRR GLFNKAAELS+LC AEIAIL+FSS GK+Y+
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 87  FGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTDR 146
           FGHPNVDALLDRFLTGNF+PPKPAEAYLPL ELN D  +AEAEFEIEK+RA ERLRN++R
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 147 FWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQWPQPS-S 206
           FWWD+ LE M++DELK FRSSLL+LRANVA RLEK  AMRM DP +          PS S
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPV---------TPSWS 180

Query: 207 IHLAGNNQCPPS 218
           I L G NQC  S
Sbjct: 181 IVLGGENQCAAS 183

[Close]

BLAST of Lsi02G011030 vs. ExPASy TrEMBL
Match: A0A6J1JGY4 (agamous-like MADS-box protein AGL61 OS=Cucurbita maxima OX=3661 GN=LOC111484282 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 3.3e-67
Identity = 145/203 (71.43%), Postives = 161/203 (79.31%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+LGRRKIEIKKLEKKS+QQVTFSKRRAGLFNKAAELSVLC AEIAIL+ S++ K+Y+
Sbjct: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60

Query: 87  FGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTDR 146
           FGHPNV++LLDRFL GN  PPKPAEAYLPL ELNRDF +  AEF+IEKRRAAERL N DR
Sbjct: 61  FGHPNVESLLDRFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLSN-DR 120

Query: 147 FWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMR-----------MGDPSIDLA 206
           FWWD+PLE MKIDELK FRSSL+ELR  VAER+EKF AMR              PSI L 
Sbjct: 121 FWWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEGSPIPALQPSTPPSITLV 180

Query: 207 GNLQWPQPS-SIHLAGNNQCPPS 218
           GNLQ P  + SI L  N Q PP+
Sbjct: 181 GNLQRPPTTPSIDLVENVQRPPT 202

[Close]

BLAST of Lsi02G011030 vs. ExPASy TrEMBL
Match: A0A6J1FUA9 (agamous-like MADS-box protein AGL61 OS=Cucurbita moschata OX=3662 GN=LOC111448852 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 4.4e-67
Identity = 151/223 (67.71%), Postives = 167/223 (74.89%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+LGRRKIEIKKLEKKS+QQVTFSKRRAGLFNKAAELSVLC AEIAIL+ SS  K+Y+
Sbjct: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60

Query: 87  FGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTDR 146
           FGHPNV++LLDRFLTGN  PPKPAEAYLPL ELNRDF +  AE++IEKRR AERL N DR
Sbjct: 61  FGHPNVESLLDRFLTGNSAPPKPAEAYLPLEELNRDFDDVAAEYDIEKRRTAERLSN-DR 120

Query: 147 FWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMR-----------MGDPSIDLA 206
           FWWD+PLE MKID+LK FRSSL++LR  VAER+EKF AMR              PSIDL 
Sbjct: 121 FWWDEPLESMKIDDLKRFRSSLVDLRGKVAERVEKFTAMRKEGSPLPALQPSTPPSIDLV 180

Query: 207 GNLQWP--QPSSIHLAGNNQ---CPPS------LSNLPGSHSV 228
            NLQ P   P SI L GN Q    PPS      L  LP S S+
Sbjct: 181 ENLQRPPTPPPSIGLFGNLQWPLTPPSIDLVENLERLPTSPSI 222

[Close]

BLAST of Lsi02G011030 vs. NCBI nr
Match: XP_008458954.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo] >KAA0054324.1 agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa] >TYK12360.1 agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa])

HSP 1 Score: 300.8 bits (769), Expect = 1.1e-77
Identity = 158/205 (77.07%), Postives = 177/205 (86.34%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+LGRRKIEIKKL+KKSTQQVTFSKRRAGLFNKAAELS+LC AEIA+L+FSS GKIY+
Sbjct: 1   MKKSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYT 60

Query: 87  FGHPNVDALLDRFLTG-NFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTD 146
           FGHPNVDALLDRFLTG N VPPKPAEAYLP+AELNRD S+AEAEFEIEKRRAAER RN++
Sbjct: 61  FGHPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKRRAAERSRNSE 120

Query: 147 RFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQWPQPSS 206
           RFWWD+PLE MKIDELK FRSSL+ELRANV ERLEK        PSID+A ++QWP+ SS
Sbjct: 121 RFWWDEPLESMKIDELKRFRSSLVELRANVVERLEKIEDRHCVTPSIDIAESIQWPETSS 180

Query: 207 IHL-AGNNQCPPSLSNLPGSHSVAM 230
           I L AGNN C PS  ++  + SVAM
Sbjct: 181 IQLAAGNNHCLPSF-HMAENRSVAM 204

[Close]

BLAST of Lsi02G011030 vs. NCBI nr
Match: XP_038895446.1 (agamous-like MADS-box protein AGL61 [Benincasa hispida])

HSP 1 Score: 295.0 bits (754), Expect = 6.2e-76
Identity = 157/207 (75.85%), Postives = 171/207 (82.61%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK LGRRKIEIKKLEKKSTQQVTFSKRR GLFNKAAELS+LC AEIAILIF+ + KIY+
Sbjct: 1   MKKFLGRRKIEIKKLEKKSTQQVTFSKRRVGLFNKAAELSILCGAEIAILIFTPHSKIYT 60

Query: 87  FGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTDR 146
           F HPNVDALLDRFLTGNFV PK      PL   NRDFSEAEAEFE+EKR AAERLRN+DR
Sbjct: 61  FAHPNVDALLDRFLTGNFVSPK------PLPGSNRDFSEAEAEFEMEKRGAAERLRNSDR 120

Query: 147 FWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGD----PSIDLAGNLQWPQ 206
           FWWDD LE M+IDELK FRSSLL+LRANVA+R+E F AM+MGD    PSI+ AGNL WP 
Sbjct: 121 FWWDDRLECMRIDELKRFRSSLLQLRANVAKRVENFQAMQMGDTSVTPSIERAGNLPWPP 180

Query: 207 PSSIHLAGNNQCPPSLSNLPGSHSVAM 230
            SS H AGNNQCPPS  +L G+HS AM
Sbjct: 181 SSSTHPAGNNQCPPSSFHLDGNHSDAM 201

[Close]

BLAST of Lsi02G011030 vs. NCBI nr
Match: KAE8637358.1 (hypothetical protein CSA_011908 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.1e-67
Identity = 139/192 (72.40%), Postives = 158/192 (82.29%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+ GRRKIEIK+L+K +T+QVTFSKRR GLFNKAAELS+LC AEIAIL+FSS GK+Y+
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 87  FGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTDR 146
           FGHPNVDALLDRFLTGNF+PPKPAEAYLPL ELN D  +AEAEFEIEK+RA ERLRN++R
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 147 FWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQWPQPS-S 206
           FWWD+ LE M++DELK FRSSLL+LRANVA RLEK  AMRM DP +          PS S
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPV---------TPSWS 180

Query: 207 IHLAGNNQCPPS 218
           I L G NQC  S
Sbjct: 181 IVLGGENQCAAS 183

[Close]

BLAST of Lsi02G011030 vs. NCBI nr
Match: XP_004139610.1 (agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.1e-67
Identity = 139/192 (72.40%), Postives = 158/192 (82.29%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+ GRRKIEIK+L+K +T+QVTFSKRR GLFNKAAELS+LC AEIAIL+FSS GK+Y+
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 87  FGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTDR 146
           FGHPNVDALLDRFLTGNF+PPKPAEAYLPL ELN D  +AEAEFEIEK+RA ERLRN++R
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 147 FWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQWPQPS-S 206
           FWWD+ LE M++DELK FRSSLL+LRANVA RLEK  AMRM DP +          PS S
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPV---------TPSWS 180

Query: 207 IHLAGNNQCPPS 218
           I L G NQC  S
Sbjct: 181 IVLGGENQCAAS 183

[Close]

BLAST of Lsi02G011030 vs. NCBI nr
Match: XP_031745942.1 (agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.1e-67
Identity = 139/192 (72.40%), Postives = 158/192 (82.29%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           MKK+ GRRKIEIK+L+K +T+QVTFSKRR GLFNKAAELS+LC AEIAIL+FSS GK+Y+
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 87  FGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTDR 146
           FGHPNVDALLDRFLTGNF+PPKPAEAYLPL ELN D  +AEAEFEIEK+RA ERLRN++R
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 147 FWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMGDPSIDLAGNLQWPQPS-S 206
           FWWD+ LE M++DELK FRSSLL+LRANVA RLEK  AMRM DP +          PS S
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPV---------TPSWS 180

Query: 207 IHLAGNNQCPPS 218
           I L G NQC  S
Sbjct: 181 IVLGGENQCAAS 183

[Close]

BLAST of Lsi02G011030 vs. TAIR 10
Match: AT5G60440.1 (AGAMOUS-like 62 )

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-28
Identity = 65/169 (38.46%), Postives = 106/169 (62.72%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           +KK+ GR+KIE+ K++ +S  QVTFSKRR+GLF KA+EL  LC AE+AI++FS   K++S
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 87  FGHPNVDALLDRFLTGNFVPP--------KPAEAYLPLAELNRDFSEAEAEFEIEKRRAA 146
           FGHPNVD+++DRF+  N +PP        +       + +LN   ++  ++ E EK++  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 147 E--RLRNTDRF---WWDDPLEHMKIDELKPFRSSLLELRANVAERLEKF 183
           E  ++R   +    WW+DP+E + + +L+ F+ +L  L+  V     +F
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRF 170

[Close]

BLAST of Lsi02G011030 vs. TAIR 10
Match: AT2G24840.1 (AGAMOUS-like 61 )

HSP 1 Score: 112.1 bits (279), Expect = 6.9e-25
Identity = 66/166 (39.76%), Postives = 103/166 (62.05%), Query Frame = 0


Query: 28  KKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSF 87
           K+++GR+KI + K++K+S +QVTFSKRRAGLF KA+EL  LC AEI I++FS   K +SF
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 88  GHPNVDALLDRFLTGNFVPPKPAEAY--LPLA--ELNRDFSEAEAEFEIEKRRA------ 147
           GHP+V+++LDR+++ N +    ++     P A  ELN   +   +E E EK++       
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 148 -AERLRNTDRFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKF 183
             E +R +   WW+ P+E M + +L+  + +L ELR  V   +  F
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASF 224

[Close]

BLAST of Lsi02G011030 vs. TAIR 10
Match: AT1G65360.1 (AGAMOUS-like 23 )

HSP 1 Score: 111.7 bits (278), Expect = 9.1e-25
Identity = 63/138 (45.65%), Postives = 87/138 (63.04%), Query Frame = 0


Query: 27  MKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYS 86
           +KKTLGRRK+EI K+ K+S  QVTFSKR+AGLF KA+E   LC A+IA+++FS  GK++S
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 87  FGHPNVDALLDRF----LTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLR 146
           FGHPNVD LLD F    +  N      +   L +  LN+ ++E +AE E E++    R +
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 147 ------NTDRFWWDDPLE 155
                 N + +W   PLE
Sbjct: 122 NERENENAEEWWSKSPLE 139

[Close]

BLAST of Lsi02G011030 vs. TAIR 10
Match: AT1G01530.1 (AGAMOUS-like 28 )

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-22
Identity = 64/161 (39.75%), Postives = 87/161 (54.04%), Query Frame = 0


Query: 28  KKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIYSF 87
           +K LGRRKIE+ K+  +S  QVTFSKRR+GLF K +EL  LC AEIAI++FS +GK YSF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 88  GHPNVDALLD----RFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAA----- 147
           GHPNV+ LLD    R +  N      +   L +  LN   +E  AE E E+         
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 148 ERLRNTDRFWWDDPLEHMKIDELKPFRSSLLELRANVAERL 180
           ER       WW +    + + +    +  L  L+  V E++
Sbjct: 123 ERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKV 163

[Close]

BLAST of Lsi02G011030 vs. TAIR 10
Match: AT1G17310.1 (MADS-box transcription factor family protein )

HSP 1 Score: 99.4 bits (246), Expect = 4.7e-21
Identity = 68/177 (38.42%), Postives = 101/177 (57.06%), Query Frame = 0


Query: 26  TMKKTLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCSAEIAILIFSSNGKIY 85
           T K T GR+KIEIKK+E+++ +QVTFSKRR GLF K+AELSVL  A+IA++ FS   +IY
Sbjct: 42  TPKTTRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIY 101

Query: 86  SFGHPNVDALLDRFLTGNFVPPKPAEAYLPLAELNRDFSEAEAEFEIEKRRAAERLRNTD 145
            FGH  VDAL+D++L  +   P   E Y             +   + E RR         
Sbjct: 102 RFGH--VDALIDKYLRKS---PVKLEGY-----------SGDNAADEESRRP-------- 161

Query: 146 RFWWDDPLEHMKIDELKPFRSSLLELRANVAERLEKFPAMRMG-DPSIDLAGNLQWP 202
             WW+ P+E +  +EL+ + ++L  LR N+ +++     + MG D ++D+     WP
Sbjct: 162 --WWERPVESVPEEELEEYMAALSMLRENIGKKI-----VAMGNDRTVDMVP--AWP 185

The following BLAST results are available for this feature:

BLAST of Lsi02G011030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKK2	2.5e-27	38.46	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]
Q4PSU4	9.8e-24	39.76	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=...	[more]
O80807	1.3e-23	45.65	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=...	[more]
Q9LMM8	7.7e-21	39.75	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=...	[more]
O64703	1.4e-17	32.35	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=...	[more]

BLAST of Lsi02G011030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLQ1	5.5e-78	77.07	Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CAA4	5.5e-78	77.07	agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103498214 PE=4...	[more]
A0A0A0LW53	1.5e-67	72.40	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G181400 PE...	[more]
A0A6J1JGY4	3.3e-67	71.43	agamous-like MADS-box protein AGL61 OS=Cucurbita maxima OX=3661 GN=LOC111484282 ...	[more]
A0A6J1FUA9	4.4e-67	67.71	agamous-like MADS-box protein AGL61 OS=Cucurbita moschata OX=3662 GN=LOC11144885...	[more]

BLAST of Lsi02G011030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458954.1	1.1e-77	77.07	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo] >KAA0054324.1 agam...	[more]
XP_038895446.1	6.2e-76	75.85	agamous-like MADS-box protein AGL61 [Benincasa hispida]	[more]
KAE8637358.1	3.1e-67	72.40	hypothetical protein CSA_011908 [Cucumis sativus]	[more]
XP_004139610.1	3.1e-67	72.40	agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]
XP_031745942.1	3.1e-67	72.40	agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]

BLAST of Lsi02G011030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60440.1	1.8e-28	38.46	AGAMOUS-like 62	[more]
AT2G24840.1	6.9e-25	39.76	AGAMOUS-like 61	[more]
AT1G65360.1	9.1e-25	45.65	AGAMOUS-like 23	[more]
AT1G01530.1	5.5e-22	39.75	AGAMOUS-like 28	[more]
AT1G17310.1	4.7e-21	38.42	MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..136
None	No IPR available	PANTHER	PTHR11945:SF580	AGAMOUS-LIKE MADS-BOX PROTEIN AGL62	coord: 32..181
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 32..181
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 53..68 score: 71.0 coord: 68..89 score: 43.92 coord: 33..53 score: 51.05
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 31..90 e-value: 1.5E-30 score: 117.5
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 41..87 e-value: 1.4E-21 score: 75.7
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 31..91 score: 27.585697
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 43..106 e-value: 2.9E-25 score: 89.9
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 32..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G011030.1	Lsi02G011030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0072546	EMC complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding