Lsi02G011020 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G011020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ER membrane protein complex subunit 3
Location	chr02: 12546075 .. 12549208 (-)
RNA-Seq Expression	Lsi02G011020
Synteny	Lsi02G011020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGATACAGATATTTTAATCTTGGTAATACTCCTTTCGTTCGGCAAAGAGTTTCAACTCTCCTCTTCCACCACGGACTGAGCATCAAACATTCGATCCCTCTTGGCCTTCGTAGTTCAACTTTGAGGAGCTCGCCTATCGGATCCAGTCATGGCGGAAGATCTAGTGCTCGACACGGCCATCAGAGATTGGGTGCTCATTCCGCTCTCCGTGGTCATGGTCCTCATCGGAGTTCTCCGCTACTTCGTCTCGAAGCTTATGCGCTCGTCTCCAGCCCCCGATGCCAAAGTTGTACGAGAAGGGTAAATTTCGCTTCCTAATCTTCAGCATTCGTACACCTTTCATCTTGTTAGTTCCTCACGCAGTTTTTAATTCTGGGTTTCAGGCAAATCGTACTTAGGGCTCGGAATTTACGTTCTGCTGCTAATTTTATTCCCCACAAGTCGTTTCGATCGCGCAGAGTTTATTACGGCAACGAGGTTCTTTCCCCCTTTTTTCCAATGTGCGATGTATTCATAAAAAAAGAAATGTAGTATGTGATGTGTATCTGTTATGGCATGCCAAATTTGCTTCATTAAACATTTTTAGAGGAATCGTTTTAGATATATCTGTTGTACTTCATTAATGGGGTAAGGTGTAGAAGGTTTAGTTTCTGTGTCGGGATTCAGCTTGATTTATCAAGTGCAGTCAGAACTCTTATGGGAGCTCTTTATTATTTCTGTTAGTTTGTTAAAATCAGTGTAGTCAAGTTGTTCATCTGGTAGTCTTTTGGATTCGTCATTTAATTTGTTGAAAATTAGTTAATGCTTCTCCTCTTTAAAGCTTGTAAGTCCTCTGTATTTGATCTCTGAGATTTGATTCAATAATTCAAGTTTCATTTCATGGTATCAGAGTAAGCCTTAATAGCTTACGGTTTCTGAGATAGGAATCTTATTTACTCGACGATGGGATACAAGCACTTAGTTAGTAGAGAAGAATTTTGGGTTTGTCATGTAGAGTGTTTATGCACTGTCCATAAGGTTTTATAGGTTGTAACTTGTATGATTTATTTCATCCTTGATCATGGTGGCATGTGGATGTCGTGTATTGTGCGACCAATTTTAGGAATCTATGTCTGAGAATGTTTGCAGTGAGATTGTATATCTTGTATTGCAGAAGGATTTTGATGTAACTATGATGTTCTAAGTAGCACAGGATTATGAATAGACAATCTGATAACCTAGATATTCATATTCCCCATATGCAATTGGCAGGAGAATGGGCTGCTCTATGTTCCCAAAGGCCAGGCCCAAAATGCACAAGCACAGATGTTTTCGGATCCAAATATGGCAATGGATATGATGAAGAAGAATCTCTCCATGATTATACCTCAGGTGACTATAGTTGCATGTTCGATGTCTATTTTTTTTTCATTGATATCACCTGGAGTTCCATTATTTACATTTTTATTAATCCTTTTATTCTTTTCTAGACTCTTACTTTTGCGTGGGTCAACTTTTTCTTCTCCGGATTTGTAGCAGGTGTGTTCTTCATACTACTAATACTTTTGAATGCCTAAGGATAGCCTTTTTGGTTGAGTGAATCTCCAAGTTATCTAGATTTATAATTTCTATACTGTTTAGGTGTTAAATGGTATGACTATGTGCTAATACCTATGATTTTTAATACATGGGAACTTTGTACGACTATTTACTATGTCTTTGCTGTTTCTCTGCCATGTTTTCTCTCCTTTTCTGATAATCCCGACCTGTTGGTTATAACTGGTAGAAAAAGTTAACCTCAGGTTTAATTAACCTTGTGCATTTAAAGCTGTTTTTCTACCTGTTTAGTATCGCTTTTCTTTTCAACCTCCATTTTGTTTGCATCTAATGGTGTCTTCTCTCCTTATCATAGCAAAAATACCCTTTCCTCTGACTCAGAGGTTCCGGTCGATGTTACAAAATGGAATCGATTTGAGTACTGTGGATGTCAGCTATGTCAGTAGCCGTTCATGGTATTTTCCAAGATCATTACTTAAATATTCTGGTGCATGTGTTAATGTCCTCTGAAGATTTTTTAATTTTTTGGGTAAAGTTTTTCCTTAAGCATTTGGTTGGATGATTATCACTAATATTTTTAGATTACTTATATCAGGTACTTTCTAAATTTGTTTGGATTAAGAGGTTTATTCAGTCTCATTCTGGGAGAAGAAAATGGTTGGTTTTTCTGTATAATGATTGCATTTAATTTATAACTGTGTATGTGTATATGGAATCTTTTCACAATAAGTAGCATTTTGAAAGTTCCAGCTCTTATACTGTGACTTATGAGAAAACAATTCTTGGTGCAGCAATGGATGATACACAGAGAATGATGCAAATGTCTGGTTTTGGCATGGACCCAACAAAGGTAAATATTGTTAGTCTTTACTACCTGGTATTTCAAATTTCTGTCTTAATTTGCAGGCTGTCATAATAAGGATGTTTAAAGTTTTATATTCATTATTTTTAACTCTCTCTCTCTCTCTCTCTTCAAATGTACTTATGCTTACATCCATACATGGAAGTTTGCATCAGTAGTATGCAAATCAATTTTCATGGTTGAATCGTTTTGATCTTCTTCATAAACATATATATATGGATTGGATTTGACATATCATTTTTTGTTTAATATCTTCTAAGAAACGTGGCTGGCTGCGTTGTATTTTGTTTCTTATTCTTCTGCCTGAGAAACAAACTAAGCTTGTGAAGGAAGTCGCATATTCTAGTGGTTATGTTTTAAACTTTGGCTCATAGTACCTATTGTAAAAGTATAGACTTTGTTGAGTCTGTATATCAGTATTGATTGTTGTCTGCTGATCATTCAAAATGAGTATCGACTGTTTGTTTATGTCTGAAACCTTGCACTGGTTGTGCAGTCTATGTTCCTGATTGTCTGCATTAATTTTGTGAGGATCCCTTTTGGTTGAACTTGCAAGTTCAGTGTAATAACTGATAACTTAGGTTGAATAGCTTTTTTGAGTCTGCTCAATCTTGCACTGGCTCAGTAGGAATAGATTGTTGTCATACATGAGGTTCCTTGGTGCTGTTAACAGGTCTCACTCACCTTGGGATGTGCATGAGGTTCAGTTTAAAGATCAGAAAAGGAGCTTTTAG

mRNA sequence

TGAGATACAGATATTTTAATCTTGGTAATACTCCTTTCGTTCGGCAAAGAGTTTCAACTCTCCTCTTCCACCACGGACTGAGCATCAAACATTCGATCCCTCTTGGCCTTCGTAGTTCAACTTTGAGGAGCTCGCCTATCGGATCCAGTCATGGCGGAAGATCTAGTGCTCGACACGGCCATCAGAGATTGGGTGCTCATTCCGCTCTCCGTGGTCATGGTCCTCATCGGAGTTCTCCGCTACTTCGTCTCGAAGCTTATGCGCTCGTCTCCAGCCCCCGATGCCAAAGTTGTACGAGAAGGGCAAATCGTACTTAGGGCTCGGAATTTACGTTCTGCTGCTAATTTTATTCCCCACAAGTCGTTTCGATCGCGCAGAGTTTATTACGGCAACGAGGAATCTATGTCTGAGAATGTTTGCAGTGAGATTGTATATCTTGTATTGCAGAAGGATTTTGATGAGAATGGGCTGCTCTATGTTCCCAAAGGCCAGGCCCAAAATGCACAAGCACAGATGTTTTCGGATCCAAATATGGCAATGGATATGATGAAGAAGAATCTCTCCATGATTATACCTCAGAGGTTCCGGTCGATGTTACAAAATGGAATCGATTTGAGTACTGTGGATGTCAGCTATGTCAGTAGCCGTTCATGGTCTCACTCACCTTGGGATGTGCATGAGGTTCAGTTTAAAGATCAGAAAAGGAGCTTTTAG

Coding sequence (CDS)

ATGGCGGAAGATCTAGTGCTCGACACGGCCATCAGAGATTGGGTGCTCATTCCGCTCTCCGTGGTCATGGTCCTCATCGGAGTTCTCCGCTACTTCGTCTCGAAGCTTATGCGCTCGTCTCCAGCCCCCGATGCCAAAGTTGTACGAGAAGGGCAAATCGTACTTAGGGCTCGGAATTTACGTTCTGCTGCTAATTTTATTCCCCACAAGTCGTTTCGATCGCGCAGAGTTTATTACGGCAACGAGGAATCTATGTCTGAGAATGTTTGCAGTGAGATTGTATATCTTGTATTGCAGAAGGATTTTGATGAGAATGGGCTGCTCTATGTTCCCAAAGGCCAGGCCCAAAATGCACAAGCACAGATGTTTTCGGATCCAAATATGGCAATGGATATGATGAAGAAGAATCTCTCCATGATTATACCTCAGAGGTTCCGGTCGATGTTACAAAATGGAATCGATTTGAGTACTGTGGATGTCAGCTATGTCAGTAGCCGTTCATGGTCTCACTCACCTTGGGATGTGCATGAGGTTCAGTTTAAAGATCAGAAAAGGAGCTTTTAG

Protein sequence

MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNLRSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQRFRSMLQNGIDLSTVDVSYVSSRSWSHSPWDVHEVQFKDQKRSF

Homology

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BLAST of Lsi02G011020 vs. ExPASy Swiss-Prot
Match: Q7SXW4 (ER membrane protein complex subunit 3 OS=Danio rerio OX=7955 GN=emc3 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.3e-16
Identity = 58/194 (29.90%), Postives = 96/194 (49.48%), Query Frame = 0


Query: 1   MAE-DLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARN 60
           MAE +L+LD+ IR WV++P+  +  L+GV+R++VS L++S      + V + Q+++R+R 
Sbjct: 1   MAEPELLLDSNIRLWVVLPIVFITFLVGVIRHYVSILLQSDKKLTLEQVSDSQVLIRSRV 60

Query: 61  LRSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQ 120
           LR    +IP +SF  R+ Y+ N+E                         +  K + +   
Sbjct: 61  LRENGKYIPKQSFLMRKFYFNNQEDG-----------------------FFKKTKRKVVP 120

Query: 121 AQMFSDPNMAMDMMKKNLSMIIPQ-------------------------RFRSMLQNGID 169
               +DP+M  DMMK N++ ++P                          RF+ MLQ GI+
Sbjct: 121 PSPMTDPSMLTDMMKGNVTNVLPMILIGGWINWTFSGFVTTKVPFPLTLRFKPMLQQGIE 171

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BLAST of Lsi02G011020 vs. ExPASy Swiss-Prot
Match: Q9P0I2 (ER membrane protein complex subunit 3 OS=Homo sapiens OX=9606 GN=EMC3 PE=1 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-15
Identity = 54/190 (28.42%), Postives = 92/190 (48.42%), Query Frame = 0


Query: 4   DLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNLRSA 63
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S      + V + Q+++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 64  ANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQAQMF 123
             +IP +SF +R+ Y+ N E                         +  K + +       
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDG-----------------------FFKKTKRKVVPPSPM 124

Query: 124 SDPNMAMDMMKKNLSMIIPQ-------------------------RFRSMLQNGIDLSTV 169
           +DP M  DMMK N++ ++P                          RF+ MLQ GI+L T+
Sbjct: 125 TDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTL 171

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BLAST of Lsi02G011020 vs. ExPASy Swiss-Prot
Match: Q99KI3 (ER membrane protein complex subunit 3 OS=Mus musculus OX=10090 GN=Emc3 PE=1 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-15
Identity = 54/190 (28.42%), Postives = 92/190 (48.42%), Query Frame = 0


Query: 4   DLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNLRSA 63
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S      + V + Q+++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 64  ANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQAQMF 123
             +IP +SF +R+ Y+ N E                         +  K + +       
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDG-----------------------FFKKTKRKVVPPSPM 124

Query: 124 SDPNMAMDMMKKNLSMIIPQ-------------------------RFRSMLQNGIDLSTV 169
           +DP M  DMMK N++ ++P                          RF+ MLQ GI+L T+
Sbjct: 125 TDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTL 171

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BLAST of Lsi02G011020 vs. ExPASy Swiss-Prot
Match: Q5R7C1 (ER membrane protein complex subunit 3 OS=Pongo abelii OX=9601 GN=EMC3 PE=2 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-15
Identity = 54/190 (28.42%), Postives = 92/190 (48.42%), Query Frame = 0


Query: 4   DLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNLRSA 63
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S      + V + Q+++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 64  ANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQAQMF 123
             +IP +SF +R+ Y+ N E                         +  K + +       
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDG-----------------------FFKKTKRKVVPPSPM 124

Query: 124 SDPNMAMDMMKKNLSMIIPQ-------------------------RFRSMLQNGIDLSTV 169
           +DP M  DMMK N++ ++P                          RF+ MLQ GI+L T+
Sbjct: 125 TDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTL 171

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BLAST of Lsi02G011020 vs. ExPASy Swiss-Prot
Match: Q5U2V8 (ER membrane protein complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Emc3 PE=2 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-15
Identity = 54/190 (28.42%), Postives = 92/190 (48.42%), Query Frame = 0


Query: 4   DLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNLRSA 63
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S      + V + Q+++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 64  ANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQAQMF 123
             +IP +SF +R+ Y+ N E                         +  K + +       
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDG-----------------------FFKKTKRKVVPPSPM 124

Query: 124 SDPNMAMDMMKKNLSMIIPQ-------------------------RFRSMLQNGIDLSTV 169
           +DP M  DMMK N++ ++P                          RF+ MLQ GI+L T+
Sbjct: 125 TDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTL 171

[Close]

BLAST of Lsi02G011020 vs. ExPASy TrEMBL
Match: A0A5D3CM07 (ER membrane protein complex subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001400 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.9e-64
Identity = 146/193 (75.65%), Postives = 146/193 (75.65%), Query Frame = 0


Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSP PDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQA 120
           RSAANFIPHKSFRSRRVYYGNE                     ENGLLYVPKGQAQNAQA
Sbjct: 61  RSAANFIPHKSFRSRRVYYGNE---------------------ENGLLYVPKGQAQNAQA 120

Query: 121 QMFSDPNMAMDMMKKNLSMIIP-------------------------QRFRSMLQNGIDL 169
           QMFSDPNMAMDMMKKNLSMIIP                         QRFRSMLQNGIDL
Sbjct: 121 QMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDL 172

[Close]

BLAST of Lsi02G011020 vs. ExPASy TrEMBL
Match: A0A1S3C924 (ER membrane protein complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103498211 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.9e-64
Identity = 146/193 (75.65%), Postives = 146/193 (75.65%), Query Frame = 0


Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSP PDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQA 120
           RSAANFIPHKSFRSRRVYYGNE                     ENGLLYVPKGQAQNAQA
Sbjct: 61  RSAANFIPHKSFRSRRVYYGNE---------------------ENGLLYVPKGQAQNAQA 120

Query: 121 QMFSDPNMAMDMMKKNLSMIIP-------------------------QRFRSMLQNGIDL 169
           QMFSDPNMAMDMMKKNLSMIIP                         QRFRSMLQNGIDL
Sbjct: 121 QMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDL 172

[Close]

BLAST of Lsi02G011020 vs. ExPASy TrEMBL
Match: A0A0A0LVU1 (ER membrane protein complex subunit 3 OS=Cucumis sativus OX=3659 GN=Csa_1G188170 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.5e-64
Identity = 145/193 (75.13%), Postives = 146/193 (75.65%), Query Frame = 0


Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSP PDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQA 120
           RSAANFIPHKSFRSRR+YYGNE                     ENGLLYVPKGQAQNAQA
Sbjct: 61  RSAANFIPHKSFRSRRIYYGNE---------------------ENGLLYVPKGQAQNAQA 120

Query: 121 QMFSDPNMAMDMMKKNLSMIIP-------------------------QRFRSMLQNGIDL 169
           QMFSDPNMAMDMMKKNLSMIIP                         QRFRSMLQNGIDL
Sbjct: 121 QMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDL 172

[Close]

BLAST of Lsi02G011020 vs. ExPASy TrEMBL
Match: A0A6J1KQZ7 (ER membrane protein complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111495678 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.6e-63
Identity = 144/193 (74.61%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSP PDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQA 120
           RSAANFIP KSFRSRRVYYGNE                     ENGLL+VPKGQAQNAQA
Sbjct: 61  RSAANFIPQKSFRSRRVYYGNE---------------------ENGLLFVPKGQAQNAQA 120

Query: 121 QMFSDPNMAMDMMKKNLSMIIP-------------------------QRFRSMLQNGIDL 169
           QMFSDPNMAMDMMKKNLSMIIP                         QRFRSMLQNGIDL
Sbjct: 121 QMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDL 172

[Close]

BLAST of Lsi02G011020 vs. ExPASy TrEMBL
Match: A0A6J1EPC4 (ER membrane protein complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111434362 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.6e-63
Identity = 144/193 (74.61%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSP PDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQA 120
           RSAANFIP KSFRSRRVYYGNE                     ENGLL+VPKGQAQNAQA
Sbjct: 61  RSAANFIPQKSFRSRRVYYGNE---------------------ENGLLFVPKGQAQNAQA 120

Query: 121 QMFSDPNMAMDMMKKNLSMIIP-------------------------QRFRSMLQNGIDL 169
           QMFSDPNMAMDMMKKNLSMIIP                         QRFRSMLQNGIDL
Sbjct: 121 QMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDL 172

[Close]

BLAST of Lsi02G011020 vs. NCBI nr
Match: XP_008458952.1 (PREDICTED: ER membrane protein complex subunit 3 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 3.9e-64
Identity = 146/193 (75.65%), Postives = 146/193 (75.65%), Query Frame = 0


Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSP PDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQA 120
           RSAANFIPHKSFRSRRVYYGNE                     ENGLLYVPKGQAQNAQA
Sbjct: 61  RSAANFIPHKSFRSRRVYYGNE---------------------ENGLLYVPKGQAQNAQA 120

Query: 121 QMFSDPNMAMDMMKKNLSMIIP-------------------------QRFRSMLQNGIDL 169
           QMFSDPNMAMDMMKKNLSMIIP                         QRFRSMLQNGIDL
Sbjct: 121 QMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDL 172

[Close]

BLAST of Lsi02G011020 vs. NCBI nr
Match: KAA0054326.1 (ER membrane protein complex subunit 3 [Cucumis melo var. makuwa] >TYK12362.1 ER membrane protein complex subunit 3 [Cucumis melo var. makuwa])

HSP 1 Score: 255.4 bits (651), Expect = 3.9e-64
Identity = 146/193 (75.65%), Postives = 146/193 (75.65%), Query Frame = 0


Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSP PDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQA 120
           RSAANFIPHKSFRSRRVYYGNE                     ENGLLYVPKGQAQNAQA
Sbjct: 61  RSAANFIPHKSFRSRRVYYGNE---------------------ENGLLYVPKGQAQNAQA 120

Query: 121 QMFSDPNMAMDMMKKNLSMIIP-------------------------QRFRSMLQNGIDL 169
           QMFSDPNMAMDMMKKNLSMIIP                         QRFRSMLQNGIDL
Sbjct: 121 QMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDL 172

[Close]

BLAST of Lsi02G011020 vs. NCBI nr
Match: XP_004139548.1 (ER membrane protein complex subunit 3 [Cucumis sativus] >KAE8652874.1 hypothetical protein Csa_013036 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 5.1e-64
Identity = 145/193 (75.13%), Postives = 146/193 (75.65%), Query Frame = 0


Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSP PDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQA 120
           RSAANFIPHKSFRSRR+YYGNE                     ENGLLYVPKGQAQNAQA
Sbjct: 61  RSAANFIPHKSFRSRRIYYGNE---------------------ENGLLYVPKGQAQNAQA 120

Query: 121 QMFSDPNMAMDMMKKNLSMIIP-------------------------QRFRSMLQNGIDL 169
           QMFSDPNMAMDMMKKNLSMIIP                         QRFRSMLQNGIDL
Sbjct: 121 QMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDL 172

[Close]

BLAST of Lsi02G011020 vs. NCBI nr
Match: XP_038894845.1 (ER membrane protein complex subunit 3 [Benincasa hispida] >XP_038894846.1 ER membrane protein complex subunit 3 [Benincasa hispida])

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-63
Identity = 145/193 (75.13%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSP PD KVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDVKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQA 120
           RSAANFIPHKSFRSRRVYYGNE                     ENGLLYVPKGQAQNAQA
Sbjct: 61  RSAANFIPHKSFRSRRVYYGNE---------------------ENGLLYVPKGQAQNAQA 120

Query: 121 QMFSDPNMAMDMMKKNLSMIIP-------------------------QRFRSMLQNGIDL 169
           QMFSDPNMAMDMMKKNLSMIIP                         QRFRSMLQNGIDL
Sbjct: 121 QMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDL 172

[Close]

BLAST of Lsi02G011020 vs. NCBI nr
Match: XP_022927570.1 (ER membrane protein complex subunit 3 [Cucurbita moschata])

HSP 1 Score: 250.8 bits (639), Expect = 9.5e-63
Identity = 144/193 (74.61%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSP PDAKVVREGQIVLRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPVPDAKVVREGQIVLRARNL 60

Query: 61  RSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQA 120
           RSAANFIP KSFRSRRVYYGNE                     ENGLL+VPKGQAQNAQA
Sbjct: 61  RSAANFIPQKSFRSRRVYYGNE---------------------ENGLLFVPKGQAQNAQA 120

Query: 121 QMFSDPNMAMDMMKKNLSMIIP-------------------------QRFRSMLQNGIDL 169
           QMFSDPNMAMDMMKKNLSMIIP                         QRFRSMLQNGIDL
Sbjct: 121 QMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDL 172

[Close]

BLAST of Lsi02G011020 vs. TAIR 10
Match: AT4G12590.1 (Protein of unknown function DUF106, transmembrane )

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-59
Identity = 128/193 (66.32%), Postives = 139/193 (72.02%), Query Frame = 0


Query: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSPAPDAKVVREGQIVLRARNL 60
           MAEDLVLDTAIRDWVLIPLSVVMVLIG+LRYFVSKLMRS+P PDAK+V+EGQ+V+RARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSTPTPDAKMVKEGQVVIRARNL 60

Query: 61  RSAANFIPHKSFRSRRVYYGNEESMSENVCSEIVYLVLQKDFDENGLLYVPKGQAQNAQA 120
           +  ANFIP KSFR+RR Y+ NE                     ENGLL+VPKG+AQN QA
Sbjct: 61  KVGANFIPPKSFRARRFYFSNE---------------------ENGLLHVPKGEAQNPQA 120

Query: 121 QMFSDPNMAMDMMKKNLSMIIP-------------------------QRFRSMLQNGIDL 169
            MFSDPNMAMDMMKKNLSMIIP                         QRFRSMLQNGIDL
Sbjct: 121 AMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDL 172

The following BLAST results are available for this feature:

BLAST of Lsi02G011020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7SXW4	5.3e-16	29.90	ER membrane protein complex subunit 3 OS=Danio rerio OX=7955 GN=emc3 PE=2 SV=1	[more]
Q9P0I2	1.6e-15	28.42	ER membrane protein complex subunit 3 OS=Homo sapiens OX=9606 GN=EMC3 PE=1 SV=3	[more]
Q99KI3	1.6e-15	28.42	ER membrane protein complex subunit 3 OS=Mus musculus OX=10090 GN=Emc3 PE=1 SV=3	[more]
Q5R7C1	1.6e-15	28.42	ER membrane protein complex subunit 3 OS=Pongo abelii OX=9601 GN=EMC3 PE=2 SV=3	[more]
Q5U2V8	1.6e-15	28.42	ER membrane protein complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Emc3 PE=2...	[more]

BLAST of Lsi02G011020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CM07	1.9e-64	75.65	ER membrane protein complex subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C924	1.9e-64	75.65	ER membrane protein complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103498211 PE...	[more]
A0A0A0LVU1	2.5e-64	75.13	ER membrane protein complex subunit 3 OS=Cucumis sativus OX=3659 GN=Csa_1G188170...	[more]
A0A6J1KQZ7	4.6e-63	74.61	ER membrane protein complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC11149567...	[more]
A0A6J1EPC4	4.6e-63	74.61	ER membrane protein complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111434...	[more]

BLAST of Lsi02G011020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458952.1	3.9e-64	75.65	PREDICTED: ER membrane protein complex subunit 3 [Cucumis melo]	[more]
KAA0054326.1	3.9e-64	75.65	ER membrane protein complex subunit 3 [Cucumis melo var. makuwa] >TYK12362.1 ER ...	[more]
XP_004139548.1	5.1e-64	75.13	ER membrane protein complex subunit 3 [Cucumis sativus] >KAE8652874.1 hypothetic...	[more]
XP_038894845.1	1.1e-63	75.13	ER membrane protein complex subunit 3 [Benincasa hispida] >XP_038894846.1 ER mem...	[more]
XP_022927570.1	9.5e-63	74.61	ER membrane protein complex subunit 3 [Cucurbita moschata]	[more]

BLAST of Lsi02G011020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12590.1	1.1e-59	66.32	Protein of unknown function DUF106, transmembrane	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002809	Integral membrane protein EMC3/TMCO1-like	SMART	SM01415	DUF106_2	coord: 4..182 e-value: 4.4E-20 score: 82.7
IPR002809	Integral membrane protein EMC3/TMCO1-like	PFAM	PF01956	EMC3_TMCO1	coord: 4..143 e-value: 1.8E-18 score: 66.8
IPR008568	ER membrane protein complex subunit 3	PANTHER	PTHR13116	UNCHARACTERIZED	coord: 102..143
IPR008568	ER membrane protein complex subunit 3	PANTHER	PTHR13116	UNCHARACTERIZED	coord: 1..84 coord: 143..169
None	No IPR available	PANTHER	PTHR13116:SF8	ER MEMBRANE PROTEIN COMPLEX SUBUNIT 3	coord: 1..84 coord: 143..169 coord: 102..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G011020.1	Lsi02G011020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane