Lsi02G011010 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G011010
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionER membrane protein complex subunit 3
Locationchr02: 12541240 .. 12542722 (-)
RNA-Seq ExpressionLsi02G011010
SyntenyLsi02G011010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTGCTCGAACCGATTATCCGATGGTTTAATCGGCTTGGTCTTGCAGTTCACTGTTTGATTGGGCTGGTGGGCTGAAATGACGAATTTTATTGGGTATGGGCCTGCATTTTTAAAATAAACCTGATAGTGTCGTTAACAAGAGGAAATGTGCATGCCTTCTAGGGCTCCAACCCAAGTCAGTGGCTATACCATGCTGAGAATATTGCCAATAGACTGCATGTACTGATTGATAAGCATTCAGTTTTTATTATACATATCATTGTCGGTTGGCTTGGGTTATAACAGGTACGACCTTGTCAAACCCGAATACCACCGAAAATGTGTAGTTTTTATAATATGAAAACCAAAGTCGCAGACCAAACCGGGTGGTTTTGGTCAGTTTAAGCAGGCTTTTCGGATGTTTTAGTTTCTTCCACCCCTAGCTGCCTATGCCATTTGAGCTAGTTTCATGTGAAACATCGTTGTACAACCTACCATCCTTGCATGGGGTGATAATGAAGCTCCATCTAAAAATCTTGTTATACTTTTTTTTTTTTAGTGTCTGGACCAGCTTACACGCATTTCGACTAATCTTACGGGACAACCCACCTGACCTACAACATTTGGGTGTCAAAGAAATTCGTAGGATTAAAATTTTTTTTAAAAAAAAAAATCATAGGACATTAATTTCTAAGTAGGTGGCCACTATGGATTGACCAAATATGATTATATCTTGGGATGTGCAAATTGTCTACAATGTTCTAATTGATTTTTAACTTTAATCAGTTCACTTTTGAGGTTTTATATGCATCTGCTAATTCTCTGGGTTCAAGGAAGCACTTTATTCCTTAAAATCTGAACCTCTTTGATTCCCTTTGCCAACTTCTTTAATTGTTCTTTAATTGGTCAATCATTTGTACGGTTTTGGCTAGTGGTCATTTAGACCGTTTTTTTGAAAGCAAAACCTGGACAACTCGATATTCTCTGTTGTCTATCTATAACAAATCTCTTTGCTAAGAAGTCATATAATTGATTAGTTAAGAAACATAATTGATCGATATCACCTTTATGAATACTTGAATTGATCATTATTCAAAATCTCTATTCTCTACTGCTGATCTTGATGGCATGCCTTTTTCTTGGCAGGGTTTGAGTGCCGAGAAAGACAACTTAGACATAGTGCAACATGAATGGGTCTTGCCCAAGTTCGAGCATCGTGCTGAAGCTGTGTTGAGAAAGATTGTCAGCTGATCGGTTTCTGGCTCACAGGTCCTCTACTAGTATATTTTCTATGGTTATTACGACTTAGGTACTTTTTTTTGGGGATTGTTGTGAAACATAGAAATCTGTTTTTATCAACCATGGATATTGTAACATTAAATTATTTTTAGTCAACTAATAACAGTTTGGATCTTTCCAAGTCATGTACATCAACTTTTATAAAAGGATACCGTTAAAGATGGAATGCAATGATGATGTTGAACATCTCTTGGAAGGCA

mRNA sequence

ATGAACTGCTCGAACCGATTATCCGATGGTTTAATCGGCTTGGTCTTGCAGTTCACTGGCTCCAACCCAAGTCAGTGGCTATACCATGCTGAGAATATTGCCAATAGACTGCATGGTTTGAGTGCCGAGAAAGACAACTTAGACATAGTGCAACATGAATGGGTCTTGCCCAAGTTCGAGCATCGTGCTGAAGCTGTGTTGAGAAAGATTGTCAGCTGATCGGTTTCTGGCTCACAGGTCCTCTACTAGTATATTTTCTATGGTTATTACGACTTAGGTACTTTTTTTTGGGGATTGTTGTGAAACATAGAAATCTGTTTTTATCAACCATGGATATTGTAACATTAAATTATTTTTAGTCAACTAATAACAGTTTGGATCTTTCCAAGTCATGTACATCAACTTTTATAAAAGGATACCGTTAAAGATGGAATGCAATGATGATGTTGAACATCTCTTGGAAGGCA

Coding sequence (CDS)

ATGAACTGCTCGAACCGATTATCCGATGGTTTAATCGGCTTGGTCTTGCAGTTCACTGGCTCCAACCCAAGTCAGTGGCTATACCATGCTGAGAATATTGCCAATAGACTGCATGGTTTGAGTGCCGAGAAAGACAACTTAGACATAGTGCAACATGAATGGGTCTTGCCCAAGTTCGAGCATCGTGCTGAAGCTGTGTTGAGAAAGATTGTCAGCTGA

Protein sequence

MNCSNRLSDGLIGLVLQFTGSNPSQWLYHAENIANRLHGLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Homology
[Close]
BLAST of Lsi02G011010 vs. ExPASy TrEMBL
Match: A0A6J1KQZ7 (ER membrane protein complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111495678 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 39  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 73
           GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Sbjct: 213 GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 246

[Close]
BLAST of Lsi02G011010 vs. ExPASy TrEMBL
Match: A0A1S3C924 (ER membrane protein complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103498211 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 39  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 73
           GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Sbjct: 213 GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 246

[Close]
BLAST of Lsi02G011010 vs. ExPASy TrEMBL
Match: A0A6J1EPC4 (ER membrane protein complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111434362 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.7e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 39  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 73
           GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKI+S
Sbjct: 213 GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIIS 246

[Close]
BLAST of Lsi02G011010 vs. ExPASy TrEMBL
Match: A0A6J1CLR8 (ER membrane protein complex subunit 3 OS=Momordica charantia OX=3673 GN=LOC111012619 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 39  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 73
           GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRK VS
Sbjct: 213 GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKFVS 246

[Close]
BLAST of Lsi02G011010 vs. ExPASy TrEMBL
Match: A0A6P3ZIZ3 (ER membrane protein complex subunit 3 OS=Ziziphus jujuba OX=326968 GN=LOC107414986 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.8e-08
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 39  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIV 72
           GLSAEKD+LDIVQHEW LPKFEHRAEAVLRK+V
Sbjct: 213 GLSAEKDSLDIVQHEWALPKFEHRAEAVLRKLV 245

[Close]
BLAST of Lsi02G011010 vs. NCBI nr
Match: XP_023001598.1 (ER membrane protein complex subunit 3 [Cucurbita maxima] >XP_023519748.1 ER membrane protein complex subunit 3 [Cucurbita pepo subsp. pepo] >KAG6583752.1 ER membrane protein complex subunit 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019391.1 ER membrane protein complex subunit 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 39  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 73
           GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Sbjct: 213 GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 246

[Close]
BLAST of Lsi02G011010 vs. NCBI nr
Match: XP_008458952.1 (PREDICTED: ER membrane protein complex subunit 3 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 39  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 73
           GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Sbjct: 213 GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 246

[Close]
BLAST of Lsi02G011010 vs. NCBI nr
Match: XP_004139548.1 (ER membrane protein complex subunit 3 [Cucumis sativus] >KAE8652874.1 hypothetical protein Csa_013036 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 39  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 73
           GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Sbjct: 213 GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 246

[Close]
BLAST of Lsi02G011010 vs. NCBI nr
Match: XP_038894845.1 (ER membrane protein complex subunit 3 [Benincasa hispida] >XP_038894846.1 ER membrane protein complex subunit 3 [Benincasa hispida])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 39  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 73
           GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS
Sbjct: 213 GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 246

[Close]
BLAST of Lsi02G011010 vs. NCBI nr
Match: XP_022927570.1 (ER membrane protein complex subunit 3 [Cucurbita moschata])

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 39  GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIVS 73
           GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKI+S
Sbjct: 213 GLSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIIS 246

[Close]
BLAST of Lsi02G011010 vs. TAIR 10
Match: AT4G12590.1 (Protein of unknown function DUF106, transmembrane )

HSP 1 Score: 56.6 bits (135), Expect = 9.5e-09
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 40  LSAEKDNLDIVQHEWVLPKFEHRAEAVLRKIV 72
           L AEKD LDI+QHEW LP+FE RAE+VLRK+V
Sbjct: 214 LGAEKDGLDIIQHEWALPRFEQRAESVLRKLV 245

The following BLAST results are available for this feature:
BLAST of Lsi02G011010 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi02G011010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KQZ76.6e-10100.00ER membrane protein complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC11149567... [more]
A0A1S3C9246.6e-10100.00ER membrane protein complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103498211 PE... [more]
A0A6J1EPC48.7e-1097.06ER membrane protein complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111434... [more]
A0A6J1CLR81.9e-0997.06ER membrane protein complex subunit 3 OS=Momordica charantia OX=3673 GN=LOC11101... [more]
A0A6P3ZIZ34.8e-0890.91ER membrane protein complex subunit 3 OS=Ziziphus jujuba OX=326968 GN=LOC1074149... [more]
BLAST of Lsi02G011010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023001598.11.4e-09100.00ER membrane protein complex subunit 3 [Cucurbita maxima] >XP_023519748.1 ER memb... [more]
XP_008458952.11.4e-09100.00PREDICTED: ER membrane protein complex subunit 3 [Cucumis melo][more]
XP_004139548.11.4e-09100.00ER membrane protein complex subunit 3 [Cucumis sativus] >KAE8652874.1 hypothetic... [more]
XP_038894845.11.4e-09100.00ER membrane protein complex subunit 3 [Benincasa hispida] >XP_038894846.1 ER mem... [more]
XP_022927570.11.8e-0997.06ER membrane protein complex subunit 3 [Cucurbita moschata][more]
BLAST of Lsi02G011010 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G12590.19.5e-0975.00Protein of unknown function DUF106, transmembrane [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G011010.1Lsi02G011010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane