Lsi02G010970 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G010970
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	agamous-like MADS-box protein AGL80
Location	chr02: 12461068 .. 12461721 (-)
RNA-Seq Expression	Lsi02G010970
Synteny	Lsi02G010970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAGAAAGAAGGTTAAACTTGCATACATCACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAAAGAAAAAAAGGGTTACTGAAGAAGCTCACCGAGCTCACCACTCTGTGCGGGATTGAGGCATGCGCCATAATCTTTAGCCCCTTCACTTCCCAACCTGACATCTGGCCCTCCTCTCCGGGGCTCCAAAGGGTTCTCTCCAAGTTCAAAAGCCTGCCAGAGATGGAGCAGTGCAAGAAGATGATGAACCAAGAGACGTTCCTTCGCGACCGAATCGCGAAGGCTGCCGACCAGCTCAAGAAGCTGCAAAGGGAGAATCACGAGAAAGAAATTGGCCGACTCATGTTTGAAAGCCTTGTAGCTGGAGCAGCGCCACCACCCAATCTTAGTGTCATTGATTTGAATGACCTTGGTTGGTTGGTTGATAAAAAAGTGGCTGATATTAACAAAAGGATGGAGTTGCTTATGGTGAACAATTCGTCGTGTTTGGCGACGGTGGAGCTGTCGTGGTTCAGGGAGATGGTGAGTCAAGGAGTTGATGAGAATCAATTGGGATTCAATATTGGGGATGATGTGATTCAACTTCCTAGTTTTGGAGAGGATGATAACCATAGTGCTTTTTGGTCAAATGATACCCTTTTCCCATGA

mRNA sequence

ATGACGAGAAAGAAGGTTAAACTTGCATACATCACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAAAGAAAAAAAGGGTTACTGAAGAAGCTCACCGAGCTCACCACTCTGTGCGGGATTGAGGCATGCGCCATAATCTTTAGCCCCTTCACTTCCCAACCTGACATCTGGCCCTCCTCTCCGGGGCTCCAAAGGGTTCTCTCCAAGTTCAAAAGCCTGCCAGAGATGGAGCAGTGCAAGAAGATGATGAACCAAGAGACGTTCCTTCGCGACCGAATCGCGAAGGCTGCCGACCAGCTCAAGAAGCTGCAAAGGGAGAATCACGAGAAAGAAATTGGCCGACTCATGTTTGAAAGCCTTGTAGCTGGAGCAGCGCCACCACCCAATCTTAGTGTCATTGATTTGAATGACCTTGGTTGGTTGGTTGATAAAAAAGTGGCTGATATTAACAAAAGGATGGAGTTGCTTATGGTGAACAATTCGTCGTGTTTGGCGACGGTGGAGCTGTCGTGGTTCAGGGAGATGGTGAGTCAAGGAGTTGATGAGAATCAATTGGGATTCAATATTGGGGATGATGTGATTCAACTTCCTAGTTTTGGAGAGGATGATAACCATAGTGCTTTTTGGTCAAATGATACCCTTTTCCCATGA

Coding sequence (CDS)

ATGACGAGAAAGAAGGTTAAACTTGCATACATCACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAAAGAAAAAAAGGGTTACTGAAGAAGCTCACCGAGCTCACCACTCTGTGCGGGATTGAGGCATGCGCCATAATCTTTAGCCCCTTCACTTCCCAACCTGACATCTGGCCCTCCTCTCCGGGGCTCCAAAGGGTTCTCTCCAAGTTCAAAAGCCTGCCAGAGATGGAGCAGTGCAAGAAGATGATGAACCAAGAGACGTTCCTTCGCGACCGAATCGCGAAGGCTGCCGACCAGCTCAAGAAGCTGCAAAGGGAGAATCACGAGAAAGAAATTGGCCGACTCATGTTTGAAAGCCTTGTAGCTGGAGCAGCGCCACCACCCAATCTTAGTGTCATTGATTTGAATGACCTTGGTTGGTTGGTTGATAAAAAAGTGGCTGATATTAACAAAAGGATGGAGTTGCTTATGGTGAACAATTCGTCGTGTTTGGCGACGGTGGAGCTGTCGTGGTTCAGGGAGATGGTGAGTCAAGGAGTTGATGAGAATCAATTGGGATTCAATATTGGGGATGATGTGATTCAACTTCCTAGTTTTGGAGAGGATGATAACCATAGTGCTTTTTGGTCAAATGATACCCTTTTCCCATGA

Protein sequence

MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPSSPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFESLVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELSWFREMVSQGVDENQLGFNIGDDVIQLPSFGEDDNHSAFWSNDTLFP

Homology

[Close]

BLAST of Lsi02G010970 vs. ExPASy Swiss-Prot
Match: Q9FJK3 (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.7e-46
Identity = 87/157 (55.41%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTRKKVKLAYI+ND++RKATFKKRKKGL+KK+ EL+TLCGI ACAII+SP+ + P++WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
           + G+QRV+S+F++LPEM+Q KKM++QE FL+ RIAKA + L++ ++++ E E+  +MF+ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELL 158
           L+ G     +L+++DLNDLG+++++ + D+N+R+E+L
Sbjct: 121 LI-GNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEIL 156

[Close]

BLAST of Lsi02G010970 vs. ExPASy Swiss-Prot
Match: Q7XJK8 (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.4e-36
Identity = 79/161 (49.07%), Postives = 110/161 (68.32%), Query Frame = 0


Query: 3   RKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPSSP 62
           ++K+KL+ I N  +RK TF KRKKG+ KKLTEL TLCG+EACA+++SPF S P+ WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFESLV 122
           G++ V+SKF  L  +++ KKM++QETF+  RIAK  +QL+KL+ ENH  +I  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCL- 121

Query: 123 AGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSS 164
            G     NL   DL DL   +DK +  + +R+E+L+ N  S
Sbjct: 122 KGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGES 161

[Close]

BLAST of Lsi02G010970 vs. ExPASy Swiss-Prot
Match: Q7XJK6 (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.3e-33
Identity = 89/212 (41.98%), Postives = 125/212 (58.96%), Query Frame = 0


Query: 4   KKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPSSPG 63
           KKVKL+ I N+ +RK +F KRK G+ KKL EL+TLCG++ACA+I+SPF   P+ WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  LQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFESLVA 123
            ++V S+F  +P   + KKMM+QET+L +RI KA +QLK L  EN E ++ R MF+  V 
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFD-CVE 121

Query: 124 GAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELSWFREMVSQGVDE 183
           G     +    DL DL   ++  +  +N R+E +  N  S L++V  S F   +  GVDE
Sbjct: 122 GKMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIKENGESLLSSV--SPFPTRI--GVDE 181

Query: 184 NQLGFNIGDDVIQLPSFGEDDNHSAFWSNDTL 216
                 IGD+     SF +   H+     DTL
Sbjct: 182 ------IGDE-----SFSDSPIHATTGVVDTL 197

[Close]

BLAST of Lsi02G010970 vs. ExPASy Swiss-Prot
Match: Q7XJK5 (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=1 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 6.2e-32
Identity = 89/211 (42.18%), Postives = 122/211 (57.82%), Query Frame = 0


Query: 4   KKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPSSPG 63
           KKVKL+ I N+ +RK +F KRK G+ KKL EL+TLCG++ACA+I+SPF   P+ WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  LQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFESLVA 123
            ++V SKF  +P   + +KMM+QET L +RI KA +QLK L  EN E ++ R MF+  V 
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFD-CVE 121

Query: 124 GAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELSWFREMVSQGVDE 183
           G          DL DL   ++  +  +N R+E +  N  S L++V  S F   +  GVDE
Sbjct: 122 GKMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIKENGESLLSSV--SPFPTRI--GVDE 181

Query: 184 NQLGFNIGDDVIQLPSFGEDDNHSAFWSNDT 215
                 IGD+     SF +   HS     DT
Sbjct: 182 ------IGDE-----SFSDSPIHSTTRVVDT 196

[Close]

BLAST of Lsi02G010970 vs. ExPASy Swiss-Prot
Match: O80805 (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 8.0e-32
Identity = 75/161 (46.58%), Postives = 106/161 (65.84%), Query Frame = 0


Query: 3   RKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPSSP 62
           R K+KL++I ND+ RK TF KRKKG+LKK  EL TLCG++ACA+I SP+ S  + WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFESLV 122
           G++ V+SKF     +++ KKM++QETFLR RIAK  ++L+KL+ EN   +I  LMF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCL- 121

Query: 123 AGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSS 164
            G     +L   DL DL   ++K +  + +R+E+L  N  S
Sbjct: 122 KGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGES 161

[Close]

BLAST of Lsi02G010970 vs. ExPASy TrEMBL
Match: A0A0A0LVU5 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G191680 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.9e-93
Identity = 179/219 (81.74%), Postives = 197/219 (89.95%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTRKKVKLAYITNDA+RKATFKKRKKGLLKKL ELTTLCGIEACAIIF+P  SQPD+WPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
           + GLQ+VLSKFKSLPEMEQCKKM+NQETFLRDRIAKAADQLKKLQREN EKEI R+MF+S
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELSWFREMVSQG 180
           LVAGA PP +L+VIDLNDLGWLVD+K+ADI KRMELL VN SS +AT E SWF EMV+QG
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180

Query: 181 V-DENQLGFNIGDDVIQLPSFGEDDNHSAFWS-NDTLFP 218
             DE+ +GFNIGDDVIQLPSFGEDDNH  FWS N+ +FP
Sbjct: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNHGTFWSNNNVIFP 219

[Close]

BLAST of Lsi02G010970 vs. ExPASy TrEMBL
Match: A0A5A7UEU7 (Agamous-like MADS-box protein AGL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001350 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.5e-93
Identity = 179/219 (81.74%), Postives = 196/219 (89.50%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTRKKVKLAYITNDA+RKATFKKRKKGLLKKL ELTTLCGIEACAIIF+P  SQPD+WPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
           + GLQ+VLSKFKSLPEMEQCKKM+NQETFLRDRIAKAADQLKKLQREN EKEI RLMF+S
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQS 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSC-LATVELSWFREMVSQ 180
           LVAGA PPP+L+VIDLNDLGWLVD+K+ADI KRME L VN SS  +AT E SWF EMV+Q
Sbjct: 121 LVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQ 180

Query: 181 -GVDENQLGFNIGDDVIQLPSFGEDDNHSAFWSNDTLFP 218
            G DE+ +GFNIGDDVIQLPSFGE DNH  FWSN+ +FP
Sbjct: 181 GGNDEDHMGFNIGDDVIQLPSFGEYDNHGTFWSNNVIFP 219

[Close]

BLAST of Lsi02G010970 vs. ExPASy TrEMBL
Match: A0A1S3C968 (agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103498216 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.5e-93
Identity = 179/219 (81.74%), Postives = 196/219 (89.50%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTRKKVKLAYITNDA+RKATFKKRKKGLLKKL ELTTLCGIEACAIIF+P  SQPD+WPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
           + GLQ+VLSKFKSLPEMEQCKKM+NQETFLRDRIAKAADQLKKLQREN EKEI RLMF+S
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQS 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSC-LATVELSWFREMVSQ 180
           LVAGA PPP+L+VIDLNDLGWLVD+K+ADI KRME L VN SS  +AT E SWF EMV+Q
Sbjct: 121 LVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQ 180

Query: 181 -GVDENQLGFNIGDDVIQLPSFGEDDNHSAFWSNDTLFP 218
            G DE+ +GFNIGDDVIQLPSFGE DNH  FWSN+ +FP
Sbjct: 181 GGNDEDHMGFNIGDDVIQLPSFGEYDNHGTFWSNNVIFP 219

[Close]

BLAST of Lsi02G010970 vs. ExPASy TrEMBL
Match: A0A6J1EUR5 (agamous-like MADS-box protein AGL80 OS=Cucurbita moschata OX=3662 GN=LOC111438097 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 4.4e-81
Identity = 163/223 (73.09%), Postives = 183/223 (82.06%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTRKKVKL +ITNDAARKATFKKRKKG LKKLTELTTLCGI+ACAIIFSPF S PD+WPS
Sbjct: 1   MTRKKVKLTFITNDAARKATFKKRKKGFLKKLTELTTLCGIDACAIIFSPFNSYPDLWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
             G+QRV+S FK+LPEMEQCKKM+NQETFLR RIAKAADQLKKLQREN EKEI  +MF+S
Sbjct: 61  LVGVQRVISHFKALPEMEQCKKMVNQETFLRHRIAKAADQLKKLQRENREKEIAHVMFQS 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLM------VNNSSCLATVELSWFR 180
           LVAG AP P+L+VIDLNDLGWLVD+K+ADI KR+ELL        N   C+ATVE SWF 
Sbjct: 121 LVAGGAPRPSLNVIDLNDLGWLVDQKMADICKRIELLRSAVAVEENQPPCVATVEPSWFI 180

Query: 181 EMVSQGVDENQLGFNIGDDVIQLPSFGEDDNHSAFWSNDTLFP 218
           EMV+Q  D+ Q+ FNIGDDVIQLP+FGED      W N+  FP
Sbjct: 181 EMVNQECDD-QMRFNIGDDVIQLPTFGEDG-----WPNNAFFP 217

[Close]

BLAST of Lsi02G010970 vs. ExPASy TrEMBL
Match: A0A6J1EG77 (agamous-like MADS-box protein AGL80 OS=Cucurbita moschata OX=3662 GN=LOC111434044 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.2e-78
Identity = 157/215 (73.02%), Postives = 177/215 (82.33%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTRKKVKL YITNDAARKATFKKRKKGL+KKLTELTTLCGIEACAIIFSPF SQPD+WPS
Sbjct: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
             GL+RVL+KFKSL EMEQC KM+NQETFLRDRIAKA DQLKKLQREN EKEI RLMFES
Sbjct: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELL--MVNNSSCLATVELSWFREMVS 180
           LVAGA PP +L++IDL DL W VD+ + D+ KR+ELL   +      + VE SWF EM+S
Sbjct: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAVEPSWFMEMMS 180

Query: 181 QGVDENQLGFNIGDDVIQLPSFGEDDNHSAFWSND 214
            G  ++Q+GF I DDVIQLP+   DDNH AFWSN+
Sbjct: 181 HGAYDDQMGFKIWDDVIQLPN---DDNHGAFWSNN 212

[Close]

BLAST of Lsi02G010970 vs. NCBI nr
Match: XP_038895832.1 (agamous-like MADS-box protein AGL80 [Benincasa hispida])

HSP 1 Score: 355.9 bits (912), Expect = 2.4e-94
Identity = 179/218 (82.11%), Postives = 194/218 (88.99%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTRKKVKLAYITND ARKATF KRKKGLLKKL ELTTLCGIEACAIIF+PF SQPD+WPS
Sbjct: 1   MTRKKVKLAYITNDTARKATFNKRKKGLLKKLNELTTLCGIEACAIIFNPFNSQPDLWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
           + GLQRVLSKFKSLPEMEQCKKM+NQET+L DRIAKA DQLKKLQREN EKEI RLMF+S
Sbjct: 61  ALGLQRVLSKFKSLPEMEQCKKMVNQETYLCDRIAKATDQLKKLQRENREKEIARLMFQS 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELSWFREMVSQG 180
           L AG  PPP+L+VIDLNDLGWLVD+KVAD+ KRMELL VN S   AT E SWF EM+S+G
Sbjct: 121 LAAGGTPPPDLNVIDLNDLGWLVDQKVADVGKRMELLRVNQSMRAATREPSWFMEMMSRG 180

Query: 181 V-DENQLGFNIGDDVIQLPSFGEDDNHSAFWSNDTLFP 218
           V DE+Q+ FNIGDDVIQLPSFGEDDNH AFWSN+TLFP
Sbjct: 181 VDDEDQMKFNIGDDVIQLPSFGEDDNHGAFWSNNTLFP 218

[Close]

BLAST of Lsi02G010970 vs. NCBI nr
Match: XP_004139619.1 (agamous-like MADS-box protein AGL80 [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 6.0e-93
Identity = 179/219 (81.74%), Postives = 197/219 (89.95%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTRKKVKLAYITNDA+RKATFKKRKKGLLKKL ELTTLCGIEACAIIF+P  SQPD+WPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
           + GLQ+VLSKFKSLPEMEQCKKM+NQETFLRDRIAKAADQLKKLQREN EKEI R+MF+S
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELSWFREMVSQG 180
           LVAGA PP +L+VIDLNDLGWLVD+K+ADI KRMELL VN SS +AT E SWF EMV+QG
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180

Query: 181 V-DENQLGFNIGDDVIQLPSFGEDDNHSAFWS-NDTLFP 218
             DE+ +GFNIGDDVIQLPSFGEDDNH  FWS N+ +FP
Sbjct: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNHGTFWSNNNVIFP 219

[Close]

BLAST of Lsi02G010970 vs. NCBI nr
Match: XP_008458956.1 (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo] >KAA0054322.1 agamous-like MADS-box protein AGL80 [Cucumis melo var. makuwa] >TYK12358.1 agamous-like MADS-box protein AGL80 [Cucumis melo var. makuwa])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 179/219 (81.74%), Postives = 196/219 (89.50%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTRKKVKLAYITNDA+RKATFKKRKKGLLKKL ELTTLCGIEACAIIF+P  SQPD+WPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
           + GLQ+VLSKFKSLPEMEQCKKM+NQETFLRDRIAKAADQLKKLQREN EKEI RLMF+S
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQS 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSC-LATVELSWFREMVSQ 180
           LVAGA PPP+L+VIDLNDLGWLVD+K+ADI KRME L VN SS  +AT E SWF EMV+Q
Sbjct: 121 LVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQ 180

Query: 181 -GVDENQLGFNIGDDVIQLPSFGEDDNHSAFWSNDTLFP 218
            G DE+ +GFNIGDDVIQLPSFGE DNH  FWSN+ +FP
Sbjct: 181 GGNDEDHMGFNIGDDVIQLPSFGEYDNHGTFWSNNVIFP 219

[Close]

BLAST of Lsi02G010970 vs. NCBI nr
Match: KAE8652877.1 (hypothetical protein Csa_013025 [Cucumis sativus])

HSP 1 Score: 339.3 bits (869), Expect = 2.4e-89
Identity = 173/209 (82.78%), Postives = 190/209 (90.91%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTRKKVKLAYITNDA+RKATFKKRKKGLLKKL ELTTLCGIEACAIIF+P  SQPD+WPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
           + GLQ+VLSKFKSLPEMEQCKKM+NQETFLRDRIAKAADQLKKLQREN EKEI R+MF+S
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELSWFREMVSQG 180
           LVAGA PP +L+VIDLNDLGWLVD+K+ADI KRMELL VN SS +AT E SWF EMV+QG
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180

Query: 181 V-DENQLGFNIGDDVIQLPSFGEDDNHSA 209
             DE+ +GFNIGDDVIQLPSFGEDDNH +
Sbjct: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNHDS 209

[Close]

BLAST of Lsi02G010970 vs. NCBI nr
Match: XP_038895833.1 (agamous-like MADS-box protein AGL80 [Benincasa hispida])

HSP 1 Score: 313.9 bits (803), Expect = 1.1e-81
Identity = 158/201 (78.61%), Postives = 177/201 (88.06%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTRKKVKLAYITND ARKAT K+RKK LLKKL ELT LCGIEACAIIF+PF SQPD+WPS
Sbjct: 1   MTRKKVKLAYITNDTARKATLKERKKSLLKKLNELTALCGIEACAIIFNPFNSQPDLWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
             GLQRVLSKFKSLPEMEQCKKM+NQET++ DRI+KA DQLKKLQREN EK I RLMF+S
Sbjct: 61  ILGLQRVLSKFKSLPEMEQCKKMVNQETYICDRISKAVDQLKKLQRENREKVIARLMFQS 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELSWFREMVSQG 180
           LVAGA PPP+L++IDLNDLGWLVD+KV D+ KRMELL VN S  +AT+E SWF EMVS+G
Sbjct: 121 LVAGATPPPDLTIIDLNDLGWLVDQKVVDVGKRMELLKVNQSMRVATMEPSWFMEMVSRG 180

Query: 181 -VDENQLGFNIGDDVIQLPSF 201
            VDE+Q+GFNIGDDVIQ+P F
Sbjct: 181 AVDEDQMGFNIGDDVIQIPRF 201

[Close]

BLAST of Lsi02G010970 vs. TAIR 10
Match: AT5G48670.1 (AGAMOUS-like 80 )

HSP 1 Score: 185.7 bits (470), Expect = 4.1e-47
Identity = 87/157 (55.41%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTRKKVKLAYI+ND++RKATFKKRKKGL+KK+ EL+TLCGI ACAII+SP+ + P++WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
           + G+QRV+S+F++LPEM+Q KKM++QE FL+ RIAKA + L++ ++++ E E+  +MF+ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELL 158
           L+ G     +L+++DLNDLG+++++ + D+N+R+E+L
Sbjct: 121 LI-GNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEIL 156

[Close]

BLAST of Lsi02G010970 vs. TAIR 10
Match: AT1G65300.1 (AGAMOUS-like 38 )

HSP 1 Score: 153.7 bits (387), Expect = 1.7e-37
Identity = 79/161 (49.07%), Postives = 110/161 (68.32%), Query Frame = 0


Query: 3   RKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPSSP 62
           ++K+KL+ I N  +RK TF KRKKG+ KKLTEL TLCG+EACA+++SPF S P+ WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFESLV 122
           G++ V+SKF  L  +++ KKM++QETF+  RIAK  +QL+KL+ ENH  +I  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCL- 121

Query: 123 AGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSS 164
            G     NL   DL DL   +DK +  + +R+E+L+ N  S
Sbjct: 122 KGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGES 161

[Close]

BLAST of Lsi02G010970 vs. TAIR 10
Match: AT5G26630.1 (MADS-box transcription factor family protein )

HSP 1 Score: 152.5 bits (384), Expect = 3.8e-37
Identity = 75/171 (43.86%), Postives = 119/171 (69.59%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPS 60
           MTR+KVK+ +I N+ ARK+TFKKRKKGLLKK  EL  LCG+   A++ SP+   P++WPS
Sbjct: 1   MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPEVWPS 60

Query: 61  SPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFES 120
                +V+S++K++  M++ KKM+NQETFL+ RI KA +  KKL++EN E E+  +MF+ 
Sbjct: 61  REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEMKNIMFDC 120

Query: 121 LVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELS 172
           L +G     ++   +L D G+++++++ D+N+R+E+L  NN    A V ++
Sbjct: 121 L-SGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKRNNEPSSALVPVA 170

[Close]

BLAST of Lsi02G010970 vs. TAIR 10
Match: AT5G26650.1 (AGAMOUS-like 36 )

HSP 1 Score: 142.1 bits (357), Expect = 5.2e-34
Identity = 89/212 (41.98%), Postives = 125/212 (58.96%), Query Frame = 0


Query: 4   KKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPSSPG 63
           KKVKL+ I N+ +RK +F KRK G+ KKL EL+TLCG++ACA+I+SPF   P+ WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  LQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFESLVA 123
            ++V S+F  +P   + KKMM+QET+L +RI KA +QLK L  EN E ++ R MF+  V 
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFD-CVE 121

Query: 124 GAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELSWFREMVSQGVDE 183
           G     +    DL DL   ++  +  +N R+E +  N  S L++V  S F   +  GVDE
Sbjct: 122 GKMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIKENGESLLSSV--SPFPTRI--GVDE 181

Query: 184 NQLGFNIGDDVIQLPSFGEDDNHSAFWSNDTL 216
                 IGD+     SF +   H+     DTL
Sbjct: 182 ------IGDE-----SFSDSPIHATTGVVDTL 197

[Close]

BLAST of Lsi02G010970 vs. TAIR 10
Match: AT5G27960.1 (AGAMOUS-like 90 )

HSP 1 Score: 139.0 bits (349), Expect = 4.4e-33
Identity = 89/211 (42.18%), Postives = 122/211 (57.82%), Query Frame = 0


Query: 4   KKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPSSPG 63
           KKVKL+ I N+ +RK +F KRK G+ KKL EL+TLCG++ACA+I+SPF   P+ WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  LQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFESLVA 123
            ++V SKF  +P   + +KMM+QET L +RI KA +QLK L  EN E ++ R MF+  V 
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFD-CVE 121

Query: 124 GAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELSWFREMVSQGVDE 183
           G          DL DL   ++  +  +N R+E +  N  S L++V  S F   +  GVDE
Sbjct: 122 GKMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIKENGESLLSSV--SPFPTRI--GVDE 181

Query: 184 NQLGFNIGDDVIQLPSFGEDDNHSAFWSNDT 215
                 IGD+     SF +   HS     DT
Sbjct: 182 ------IGDE-----SFSDSPIHSTTRVVDT 196

The following BLAST results are available for this feature:

BLAST of Lsi02G010970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJK3	5.7e-46	55.41	Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=...	[more]
Q7XJK8	2.4e-36	49.07	MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 P...	[more]
Q7XJK6	7.3e-33	41.98	Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=...	[more]
Q7XJK5	6.2e-32	42.18	Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=...	[more]
O80805	8.0e-32	46.58	MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 P...	[more]

BLAST of Lsi02G010970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVU5	2.9e-93	81.74	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G191680 PE...	[more]
A0A5A7UEU7	6.5e-93	81.74	Agamous-like MADS-box protein AGL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3C968	6.5e-93	81.74	agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103498216 PE=4...	[more]
A0A6J1EUR5	4.4e-81	73.09	agamous-like MADS-box protein AGL80 OS=Cucurbita moschata OX=3662 GN=LOC11143809...	[more]
A0A6J1EG77	1.2e-78	73.02	agamous-like MADS-box protein AGL80 OS=Cucurbita moschata OX=3662 GN=LOC11143404...	[more]

BLAST of Lsi02G010970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895832.1	2.4e-94	82.11	agamous-like MADS-box protein AGL80 [Benincasa hispida]	[more]
XP_004139619.1	6.0e-93	81.74	agamous-like MADS-box protein AGL80 [Cucumis sativus]	[more]
XP_008458956.1	1.3e-92	81.74	PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo] >KAA0054322.1 agam...	[more]
KAE8652877.1	2.4e-89	82.78	hypothetical protein Csa_013025 [Cucumis sativus]	[more]
XP_038895833.1	1.1e-81	78.61	agamous-like MADS-box protein AGL80 [Benincasa hispida]	[more]

BLAST of Lsi02G010970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48670.1	4.1e-47	55.41	AGAMOUS-like 80	[more]
AT1G65300.1	1.7e-37	49.07	AGAMOUS-like 38	[more]
AT5G26630.1	3.8e-37	43.86	MADS-box transcription factor family protein	[more]
AT5G26650.1	5.2e-34	41.98	AGAMOUS-like 36	[more]
AT5G27960.1	4.4e-33	42.18	AGAMOUS-like 90	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..114
None	No IPR available	PANTHER	PTHR48019:SF17	AGAMOUS-LIKE MADS-BOX PROTEIN AGL80	coord: 1..160
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..160
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 39.56 coord: 23..38 score: 60.12 coord: 38..59 score: 26.46
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.7E-22 score: 90.7
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..50 e-value: 4.5E-17 score: 61.3
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..49 score: 17.422792
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..97 e-value: 1.9E-18 score: 68.3
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..95
IPR033897	MADS SRF-like	CDD	cd00266	MADS_SRF_like	coord: 2..85 e-value: 5.4822E-21 score: 81.1523

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G010970.1	Lsi02G010970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0000987	cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding