Lsi02G009400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G009400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	30-kDa cleavage and polyadenylation specificity factor 30
Location	chr02: 9232421 .. 9233919 (+)
RNA-Seq Expression	Lsi02G009400
Synteny	Lsi02G009400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCGTGTTCTTCTAATTTGGCTTGAAACTACTCATTGTCTTGGCTTGTTTCATGTCTACCATCCACATGTACGTGGAGGATGATTGTTTGAAGAAATGATATTTGGTCCTTCACATCTTGTTCAACAATCTTGCAGGGTGTTACCTTTTTTGTGGGATAAGTTTTTTTTTTTTGTATACTCGTGTATTCTTTCATTCTTTCTCAATTAAAGCTGTTGTTTCTATATATATATATATATATAATCTTGTTCAGCAATCATTGTTAGCATTGGATACTAATTGAGCCATCATTTTTCTCGTACTTTTACAAGTGCAGATCAGTAGCCAAGAGCTAGAGCCCTTTATTGGTGAGCTGGCGTCTTTACTTTATCTTGAGCCAGATGGTGAACTGATGGTATGCTTGCTTTGTTCATTTTGGTCGAATCAGAAAACTTTAAAATACATTCCCATTACAAAATAAGGATTACATATGCAACAAGGCGAGGAAGGAATGAAATTTAAGGAAATGGATTATGGCAGTTTCTGGATTTGTTATTATGTAATTATTGGATAACACTAGCTGGATTTCTCAAGTGAGTTTTTCTGCTTTTTGTGATCAGGCTGTCTCAATAGCAGCATAATCGAAACGGGAAGAGGAGAAAGTAAAGGGGGTTAATCCTGATGTTGGAAACGAAAACCCAGATATCGTCCCGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCCGTTGGTCTACCAGCTCAGGGTAGAGGAAGAGTCAGGGGAATCATGTGGCCCCCATATATGCCAATGGGACGTTGCGCTCGACCCTTTCATGGAATGCAGGGTTTTCCACTTGGGATGATGGGTCCGGATGGGTTGTCTTATGGTTCTGTTACACCTGATGGATTTTCCATGCCTGACATTTTTGGGATGACACCTTGTGGTTTTGGTCCATATGATCCTAGGTTTTCCGGTGATTTTATGGGTCCCCCATCTTTTCTAATGTTTCACGGACGACCTTCTCAACCTGGGGCCATGTTCTCCCCTACTGGGTTTGGGATGATGATGGGTCAAGGATGTGGCCCCTTTATGGGTGGGATGGGAGTTACTGGTACTAACCCAGCTTGACCTGGTCGTCCTGTCGGTGTATCTCCATTGTATCCACCTCCTGCAGTACCCTCATCTCAGAACATTAATCGAGCTGTTAAGAGGGACCAACTATTGATCGAAATGATAGATATATTGTGGGTCCAGACCAAAACAAGGGCCAGGAGATGCCAGGAAGTGGACATGATGATGGAATGCAATATAAGCATGGATCAAAAGCTTATTCTGATGAGCAATATGGAATGGGAACTACCTTTAGGAATGAAGAAAGCGAAGGTGAGGACGAAGCACCTCGACGATCAAGGCATGGAGAGGAGAAGAAGAAAGCGGAGAGGCTCAGAAGGAGATTCGACTGCAATCTCTGATCAATGA

mRNA sequence

ATGTTTCGTGTTCTTCTAATTTGGCTTGAAACTACTCATTGTCTTGGCTTGTTTCATGTCTACCATCCACATATCAGTAGCCAAGAGCTAGAGCCCTTTATTGGTGAGCTGGCGTCTTTACTTTATCTTGAGCCAGATGATATCGTCCCGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCCGTTGGTCTACCAGCTCAGGGTAGAGGAAGAGTCAGGGGAATCATGTGGCCCCCATATATGCCAATGGGACGTTGCGCTCGACCCTTTCATGGAATGCAGGGTTTTCCACTTGGGATGATGGGTCCGGATGGGTTGTCTTATGGTTCTGTTACACCTGATGGATTTTCCATGCCTGACATTTTTGGGATGACACCTTGTGGTTTTGGTCCATATGATCCTAGGTTTTCCGGTGATTTTATGGGTCCCCCATCTTTTCTAATGTTTCACGGACGACCTTCTCAACCTGGGGCCATGTTCTCCCCTACTGGGTTTGGGATGATGATGGGTCAAGGATGTGGCCCCTTTATGGGTGGGATGGGAGTTACTGTACCCTCATCTCAGAACATTAATCGAGCTGTTAAGAGGGACCAACTATTGATCGAAATGATAGATATATTGTGGGTCCAGACCAAAACAAGGGCCAGGAGATGCCAGGAAGTGGACATGATGATGGAATGCAATATAAGCATGGATCAAAAGCTTATTCTGATGAGCAATATGGAATGGGAACTACCTTTAGGAATGAAGAAAGCGAAGGTGAGGACGAAGCACCTCGACGATCAAGGCATGGAGAGGAGAAGAAGAAAGCGGAGAGGCTCAGAAGGAGATTCGACTGCAATCTCTGATCAATGA

Coding sequence (CDS)

ATGTTTCGTGTTCTTCTAATTTGGCTTGAAACTACTCATTGTCTTGGCTTGTTTCATGTCTACCATCCACATATCAGTAGCCAAGAGCTAGAGCCCTTTATTGGTGAGCTGGCGTCTTTACTTTATCTTGAGCCAGATGATATCGTCCCGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCCGTTGGTCTACCAGCTCAGGGTAGAGGAAGAGTCAGGGGAATCATGTGGCCCCCATATATGCCAATGGGACGTTGCGCTCGACCCTTTCATGGAATGCAGGGTTTTCCACTTGGGATGATGGGTCCGGATGGGTTGTCTTATGGTTCTGTTACACCTGATGGATTTTCCATGCCTGACATTTTTGGGATGACACCTTGTGGTTTTGGTCCATATGATCCTAGGTTTTCCGGTGATTTTATGGGTCCCCCATCTTTTCTAATGTTTCACGGACGACCTTCTCAACCTGGGGCCATGTTCTCCCCTACTGGGTTTGGGATGATGATGGGTCAAGGATGTGGCCCCTTTATGGGTGGGATGGGAGTTACTGTACCCTCATCTCAGAACATTAATCGAGCTGTTAAGAGGGACCAACTATTGATCGAAATGATAGATATATTGTGGGTCCAGACCAAAACAAGGGCCAGGAGATGCCAGGAAGTGGACATGATGATGGAATGCAATATAAGCATGGATCAAAAGCTTATTCTGATGAGCAATATGGAATGGGAACTACCTTTAGGAATGAAGAAAGCGAAGGTGAGGACGAAGCACCTCGACGATCAAGGCATGGAGAGGAGAAGAAGAAAGCGGAGAGGCTCAGAAGGAGATTCGACTGCAATCTCTGATCAATGA

Protein sequence

MFRVLLIWLETTHCLGLFHVYHPHISSQELEPFIGELASLLYLEPDDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGPDGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPTGFGMMMGQGCGPFMGGMGVTVPSSQNINRAVKRDQLLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAKVRTKHLDDQGMERRRRKRRGSEGDSTAISDQ

Homology

[Close]

BLAST of Lsi02G009400 vs. ExPASy Swiss-Prot
Match: A9LNK9 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana OX=3702 GN=CPSF30 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.4e-39
Identity = 110/200 (55.00%), Postives = 119/200 (59.50%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEP +GE LASLLYLEPD                               DIVPFEDNE
Sbjct: 358 QELEPSVGEQLASLLYLEPDSELMAISIAAEAKREEEKAKGVNPESRAENPDIVPFEDNE 417

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEE E EEEE   +S+    QGRGR RGIMWPP MP+GR  RP  GM GFPLG+MGP
Sbjct: 418 EEEEEEDESEEEE---ESMAGGPQGRGRGRGIMWPPQMPLGRGIRPMPGMGGFPLGVMGP 477

Query: 148 -DGLSYGSVTPDGFS-MPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFS 194
            D   YG   P G++ MPD FGM P  FGPY PRF GDF GP   +MF GRP Q    F 
Sbjct: 478 GDAFPYG---PGGYNGMPDPFGMGPRPFGPYGPRFGGDFRGPVPGMMFPGRPPQ---QFP 537

[Close]

BLAST of Lsi02G009400 vs. ExPASy Swiss-Prot
Match: Q0DA50 (Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0677700 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-36
Identity = 107/208 (51.44%), Postives = 120/208 (57.69%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEPFIGE LASLLYLEPD                               DIV F+DNE
Sbjct: 381 QELEPFIGEQLASLLYLEPDSELTAILIAAEAKKEEEKAKGVSADEAADNQDIVLFDDNE 440

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEESEEEEE +     G  +QGRGR RG+MWPP MPM R   P  G +GFP  M+G 
Sbjct: 441 EEEEEESEEEEEGN-----GQESQGRGRGRGMMWPPQMPMLRGVGPMMGGRGFPPNMIG- 500

Query: 148 DGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFM--GPPSFLMFHGRPSQPGAMFS 202
           DG  +G     GF MPD FG+ P GF P+ PRF GDF   GP   ++F GRP QPG MF 
Sbjct: 501 DGFGFGG----GFGMPDPFGV-PRGFPPFGPRFPGDFARGGPMPGMVFPGRPPQPGGMF- 560

[Close]

BLAST of Lsi02G009400 vs. ExPASy TrEMBL
Match: A0A5D3C2W1 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00560 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77
Identity = 186/331 (56.19%), Postives = 205/331 (61.93%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEP IGE LASLLYLEPD                               DIVPFEDNE
Sbjct: 386 QELEPSIGEQLASLLYLEPDGELMAVSIAAESKREEEKAKGVNPDIGNENPDIVPFEDNE 445

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEESEEEEEESFGQSVGLPAQGRGR RGIMWPP+MPMGR ARPFHGMQ FP GMMGP
Sbjct: 446 EEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPHMPMGRGARPFHGMQSFPPGMMGP 505

Query: 148 DGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPT 207
           DGLSYG VTPDGF MPDIFGM P GFGPY PRFSGDFMGPPS +MF GRPSQPGAMF+P 
Sbjct: 506 DGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFMGPPSAMMFRGRPSQPGAMFTPG 565

Query: 208 GFGMMMGQGCGPFMGGMGVT---------------------VPSSQNINRAVKRDQ---- 267
           GFGMMMGQG GPFMGGMGVT                     VPS+QNINRA+KRDQ    
Sbjct: 566 GFGMMMGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPAVPSAQNINRAIKRDQRGPT 625

Query: 268 -----LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK 297
                  I   D    Q    +   + +          D++  + +    E      +A 
Sbjct: 626 SDRNDRYIVGPDQNKGQEMLSSGHDEGMQYKQGSKAYPDEQYGMGTTFRNEESESEDEAP 685

[Close]

BLAST of Lsi02G009400 vs. ExPASy TrEMBL
Match: A0A1S3BC28 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=3656 GN=LOC103488286 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77
Identity = 186/331 (56.19%), Postives = 205/331 (61.93%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEP IGE LASLLYLEPD                               DIVPFEDNE
Sbjct: 386 QELEPSIGEQLASLLYLEPDGELMAVSIAAESKREEEKAKGVNPDIGNENPDIVPFEDNE 445

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEESEEEEEESFGQSVGLPAQGRGR RGIMWPP+MPMGR ARPFHGMQ FP GMMGP
Sbjct: 446 EEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPHMPMGRGARPFHGMQSFPPGMMGP 505

Query: 148 DGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPT 207
           DGLSYG VTPDGF MPDIFGM P GFGPY PRFSGDFMGPPS +MF GRPSQPGAMF+P 
Sbjct: 506 DGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFMGPPSAMMFRGRPSQPGAMFTPG 565

Query: 208 GFGMMMGQGCGPFMGGMGVT---------------------VPSSQNINRAVKRDQ---- 267
           GFGMMMGQG GPFMGGMGVT                     VPS+QNINRA+KRDQ    
Sbjct: 566 GFGMMMGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPAVPSAQNINRAIKRDQRGPT 625

Query: 268 -----LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK 297
                  I   D    Q    +   + +          D++  + +    E      +A 
Sbjct: 626 SDRNDRYIVGPDQNKGQEMLSSGHDEGMQYKQGSKAYPDEQYGMGTTFRNEESESEDEAP 685

[Close]

BLAST of Lsi02G009400 vs. ExPASy TrEMBL
Match: A0A6J1CE78 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Momordica charantia OX=3673 GN=LOC111010855 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 3.1e-77
Identity = 185/331 (55.89%), Postives = 202/331 (61.03%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEP IGE LASLLYLEPD                               DIVPFEDNE
Sbjct: 383 QELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEKAKGVNPDIGSENPDIVPFEDNE 442

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEESEEEEEESFGQSVGLPAQGRGR RGIMWPP+MPMGR ARPFHGMQGFP GMMGP
Sbjct: 443 EEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPHMPMGRGARPFHGMQGFPPGMMGP 502

Query: 148 DGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPT 207
           DGLSYG VTPDGF MPDIFGM P GFGPY PRFSGDFMGPPS +MF GRPSQPGAMF P 
Sbjct: 503 DGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFMGPPSAMMFRGRPSQPGAMFPPG 562

Query: 208 GFGMMMGQGCGPFMGGMGVT---------------------VPSSQNINRAVKRDQ---- 267
           GFGMMMGQG GPFMGGMGVT                     VP SQN+NR VKRDQ    
Sbjct: 563 GFGMMMGQGRGPFMGGMGVTGANPARPGRPVSVSQLYPPPAVPPSQNMNRVVKRDQRGPG 622

Query: 268 -----LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK 297
                  I   D    Q    +    E+          D++  + +    E      +A 
Sbjct: 623 NDRNDRYIAGPDQSKGQEMPGSGHDDEMQYKQGSKAYPDEQYGIGTTFRNEESESEDEAP 682

[Close]

BLAST of Lsi02G009400 vs. ExPASy TrEMBL
Match: A0A0A0KSR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647360 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 9.8e-76
Identity = 181/331 (54.68%), Postives = 207/331 (62.54%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEP +GE LASLLYLEPD                               DIVPFEDNE
Sbjct: 384 QELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVNPDIGSENPDIVPFEDNE 443

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEESEEEEEESFGQS GLP QGRGR RG+MWPP+MPMGR ARPFHGMQGFP GMMGP
Sbjct: 444 EEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPHMPMGRGARPFHGMQGFPPGMMGP 503

Query: 148 DGLSYGSVTPDGFSMPDIFGMTPCGFGPY--DPRFSGDFMGPPSFLMFHGRPSQPGAMFS 207
           DGLSYG VTPDGF MPDIFGMTP GFGPY   PRFSGDFMGPP+ +MF GRPSQP AMF 
Sbjct: 504 DGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSGDFMGPPTAMMFRGRPSQPAAMFP 563

Query: 208 PTGFGMMMGQGCGPFMGGMGV---------------------TVPSSQNINRAVKRDQ-- 267
           P+GFGMMMGQG GPFMGGMGV                      VPSSQN+NRA+KRDQ  
Sbjct: 564 PSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRG 623

Query: 268 -----LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK 297
                 ++ M     V+ ++  R  +E+          D++    +    E      +A 
Sbjct: 624 LTNDRYIVGMDQNKGVEIQSSGRD-EEMQYKQGSKAYSDEQYGTGTTFRNEESESEDEAP 683

[Close]

BLAST of Lsi02G009400 vs. ExPASy TrEMBL
Match: A0A6J1JWQ9 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucurbita maxima OX=3661 GN=LOC111490386 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.6e-73
Identity = 181/330 (54.85%), Postives = 201/330 (60.91%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEP IGE LASLLYLEPD                               DIVPFEDNE
Sbjct: 383 QELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEKAKGVNPDIRNENPDIVPFEDNE 442

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEESEEEEEESFGQSVG PAQGRGR RGIMWPP+MPMGR ARPFHGMQGFP GMMGP
Sbjct: 443 EEEEEESEEEEEESFGQSVGPPAQGRGRGRGIMWPPHMPMGRGARPFHGMQGFPPGMMGP 502

Query: 148 DGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPT 207
           DG+SYG VTPDGF MPDIFGM P GF PY  RFSG+FM P S +MF GRPSQPGAMF P 
Sbjct: 503 DGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFMNPQSAMMFRGRPSQPGAMFPPG 562

Query: 208 GFGMMMGQGCGPFMGGMGVT--------------------VPSSQNINRAVKRDQ----- 267
           GFGMMMGQG GPFMGGMGVT                    VPSSQN+NRA+KRDQ     
Sbjct: 563 GFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPPPAVPSSQNMNRAMKRDQRGPGS 622

Query: 268 ----LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAKV 297
                 I   D    Q    +    E+          D++  + + +  E      +A  
Sbjct: 623 DRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPDEQYGMGTAIRNEESESEDEAPR 682

[Close]

BLAST of Lsi02G009400 vs. NCBI nr
Match: XP_038894441.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispida])

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-77
Identity = 192/331 (58.01%), Postives = 209/331 (63.14%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEP IGE LASLLYLEPD                               DIVPFEDNE
Sbjct: 384 QELEPSIGEQLASLLYLEPDGELMAVSIAAEAKREEEKAKGVNPDIGNENPDIVPFEDNE 443

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEESEEEEEESFGQSVGLPAQGRGR RGIMWPP+MPMGR ARPFHGMQGFP GM+GP
Sbjct: 444 EEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPHMPMGRGARPFHGMQGFPPGMIGP 503

Query: 148 DGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPT 207
           DGLSYG VTP+GF MPDIFGM P GFGPY PRFSGDFMGPPS +MF GRPSQPGAMFSP+
Sbjct: 504 DGLSYGPVTPEGFPMPDIFGMAPRGFGPYGPRFSGDFMGPPSAMMFRGRPSQPGAMFSPS 563

Query: 208 GFGMMMGQGCGPFMGGMGVT---------------------VPSSQNINRAVKRDQL--L 267
           GFGMMMGQG GPFMGGMGVT                     VPS QNINRAVKRDQ    
Sbjct: 564 GFGMMMGQGRGPFMGGMGVTGTNPARPGRPVGVSPLYPPPAVPSPQNINRAVKRDQRGPT 623

Query: 268 IEMIDILWV---QTKTRARRCQEVDMMMECNIS----MDQKLILMSNMEWELPLGMKKAK 297
            +  D   V   Q K +       D  M+         D++  + +    E      +A 
Sbjct: 624 SDRNDRYIVGLDQNKGQEMPGSGYDDGMQYKQGSKGYSDEQYGMGTTFRNEESESEDEAP 683

[Close]

BLAST of Lsi02G009400 vs. NCBI nr
Match: XP_008445183.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo] >KAA0036926.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo var. makuwa] >TYK05548.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo var. makuwa])

HSP 1 Score: 299.7 bits (766), Expect = 2.8e-77
Identity = 186/331 (56.19%), Postives = 205/331 (61.93%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEP IGE LASLLYLEPD                               DIVPFEDNE
Sbjct: 386 QELEPSIGEQLASLLYLEPDGELMAVSIAAESKREEEKAKGVNPDIGNENPDIVPFEDNE 445

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEESEEEEEESFGQSVGLPAQGRGR RGIMWPP+MPMGR ARPFHGMQ FP GMMGP
Sbjct: 446 EEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPHMPMGRGARPFHGMQSFPPGMMGP 505

Query: 148 DGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPT 207
           DGLSYG VTPDGF MPDIFGM P GFGPY PRFSGDFMGPPS +MF GRPSQPGAMF+P 
Sbjct: 506 DGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFMGPPSAMMFRGRPSQPGAMFTPG 565

Query: 208 GFGMMMGQGCGPFMGGMGVT---------------------VPSSQNINRAVKRDQ---- 267
           GFGMMMGQG GPFMGGMGVT                     VPS+QNINRA+KRDQ    
Sbjct: 566 GFGMMMGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPAVPSAQNINRAIKRDQRGPT 625

Query: 268 -----LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK 297
                  I   D    Q    +   + +          D++  + +    E      +A 
Sbjct: 626 SDRNDRYIVGPDQNKGQEMLSSGHDEGMQYKQGSKAYPDEQYGMGTTFRNEESESEDEAP 685

[Close]

BLAST of Lsi02G009400 vs. NCBI nr
Match: XP_022140120.1 (30-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia])

HSP 1 Score: 298.5 bits (763), Expect = 6.3e-77
Identity = 185/331 (55.89%), Postives = 202/331 (61.03%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEP IGE LASLLYLEPD                               DIVPFEDNE
Sbjct: 383 QELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEKAKGVNPDIGSENPDIVPFEDNE 442

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEESEEEEEESFGQSVGLPAQGRGR RGIMWPP+MPMGR ARPFHGMQGFP GMMGP
Sbjct: 443 EEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPHMPMGRGARPFHGMQGFPPGMMGP 502

Query: 148 DGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPT 207
           DGLSYG VTPDGF MPDIFGM P GFGPY PRFSGDFMGPPS +MF GRPSQPGAMF P 
Sbjct: 503 DGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFMGPPSAMMFRGRPSQPGAMFPPG 562

Query: 208 GFGMMMGQGCGPFMGGMGVT---------------------VPSSQNINRAVKRDQ---- 267
           GFGMMMGQG GPFMGGMGVT                     VP SQN+NR VKRDQ    
Sbjct: 563 GFGMMMGQGRGPFMGGMGVTGANPARPGRPVSVSQLYPPPAVPPSQNMNRVVKRDQRGPG 622

Query: 268 -----LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK 297
                  I   D    Q    +    E+          D++  + +    E      +A 
Sbjct: 623 NDRNDRYIAGPDQSKGQEMPGSGHDDEMQYKQGSKAYPDEQYGIGTTFRNEESESEDEAP 682

[Close]

BLAST of Lsi02G009400 vs. NCBI nr
Match: XP_004141524.1 (30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis sativus] >KGN52613.1 hypothetical protein Csa_008573 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 2.0e-75
Identity = 181/331 (54.68%), Postives = 207/331 (62.54%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEP +GE LASLLYLEPD                               DIVPFEDNE
Sbjct: 384 QELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVNPDIGSENPDIVPFEDNE 443

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEESEEEEEESFGQS GLP QGRGR RG+MWPP+MPMGR ARPFHGMQGFP GMMGP
Sbjct: 444 EEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPHMPMGRGARPFHGMQGFPPGMMGP 503

Query: 148 DGLSYGSVTPDGFSMPDIFGMTPCGFGPY--DPRFSGDFMGPPSFLMFHGRPSQPGAMFS 207
           DGLSYG VTPDGF MPDIFGMTP GFGPY   PRFSGDFMGPP+ +MF GRPSQP AMF 
Sbjct: 504 DGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSGDFMGPPTAMMFRGRPSQPAAMFP 563

Query: 208 PTGFGMMMGQGCGPFMGGMGV---------------------TVPSSQNINRAVKRDQ-- 267
           P+GFGMMMGQG GPFMGGMGV                      VPSSQN+NRA+KRDQ  
Sbjct: 564 PSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRG 623

Query: 268 -----LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK 297
                 ++ M     V+ ++  R  +E+          D++    +    E      +A 
Sbjct: 624 LTNDRYIVGMDQNKGVEIQSSGRD-EEMQYKQGSKAYSDEQYGTGTTFRNEESESEDEAP 683

[Close]

BLAST of Lsi02G009400 vs. NCBI nr
Match: XP_038889902.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispida])

HSP 1 Score: 291.6 bits (745), Expect = 7.7e-75
Identity = 181/331 (54.68%), Postives = 203/331 (61.33%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEP IGE LASLLYLEPD                               DIVPFEDNE
Sbjct: 385 QELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEKAKGVNPDIGSENPDIVPFEDNE 444

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEESEEEEEESFGQSVGLP QGRGR RGI+WPP+MPMGR ARPF GMQGFP GMMGP
Sbjct: 445 EEEEEESEEEEEESFGQSVGLPPQGRGRGRGIVWPPHMPMGRGARPFPGMQGFPPGMMGP 504

Query: 148 DGLSYGSVTPDGFSMPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFSPT 207
           DGLSYG VTPDGF MPDIFGM P GFGPY PRFSGDFMGPP+ +MF GRPSQPGAMF P 
Sbjct: 505 DGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFMGPPTAMMFRGRPSQPGAMFPPG 564

Query: 208 GFGMMMGQGCGPFMGGMGV---------------------TVPSSQNINRAVKRDQ---- 267
           GFGMMMGQG GPFMGGMG+                      VPSSQN+NRA+KRDQ    
Sbjct: 565 GFGMMMGQGRGPFMGGMGIAGTNPSRPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRGPA 624

Query: 268 -----LLIEMIDILWVQTKTRARRCQEVDMMMECNISMDQKLILMSNMEWELPLGMKKAK 297
                  I  +D         + R  E+          D++  + +    E      +A 
Sbjct: 625 SERNDRYIVGLDQNKGLEMPSSGRDDEMQYKQGSKAYSDEQYGVGTTFRNEESESEDEAP 684

[Close]

BLAST of Lsi02G009400 vs. TAIR 10
Match: AT1G30460.1 (cleavage and polyadenylation specificity factor 30 )

HSP 1 Score: 162.9 bits (411), Expect = 3.9e-40
Identity = 110/200 (55.00%), Postives = 119/200 (59.50%), Query Frame = 0


Query: 28  QELEPFIGE-LASLLYLEPD-------------------------------DIVPFEDNE 87
           QELEP +GE LASLLYLEPD                               DIVPFEDNE
Sbjct: 358 QELEPSVGEQLASLLYLEPDSELMAISIAAEAKREEEKAKGVNPESRAENPDIVPFEDNE 417

Query: 88  EEEEEESEEEEEESFGQSVGLPAQGRGRVRGIMWPPYMPMGRCARPFHGMQGFPLGMMGP 147
           EEEEEE E EEEE   +S+    QGRGR RGIMWPP MP+GR  RP  GM GFPLG+MGP
Sbjct: 418 EEEEEEDESEEEE---ESMAGGPQGRGRGRGIMWPPQMPLGRGIRPMPGMGGFPLGVMGP 477

Query: 148 -DGLSYGSVTPDGFS-MPDIFGMTPCGFGPYDPRFSGDFMGPPSFLMFHGRPSQPGAMFS 194
            D   YG   P G++ MPD FGM P  FGPY PRF GDF GP   +MF GRP Q    F 
Sbjct: 478 GDAFPYG---PGGYNGMPDPFGMGPRPFGPYGPRFGGDFRGPVPGMMFPGRPPQ---QFP 537

The following BLAST results are available for this feature:

BLAST of Lsi02G009400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LNK9	5.4e-39	55.00	30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thalian...	[more]
Q0DA50	1.9e-36	51.44	Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Lsi02G009400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2W1	1.4e-77	56.19	30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. m...	[more]
A0A1S3BC28	1.4e-77	56.19	30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=365...	[more]
A0A6J1CE78	3.1e-77	55.89	30-kDa cleavage and polyadenylation specificity factor 30 OS=Momordica charantia...	[more]
A0A0A0KSR6	9.8e-76	54.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647360 PE=4 SV=1	[more]
A0A6J1JWQ9	1.6e-73	54.85	30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucurbita maxi...	[more]

BLAST of Lsi02G009400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894441.1	1.7e-77	58.01	30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispid...	[more]
XP_008445183.1	2.8e-77	56.19	PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis me...	[more]
XP_022140120.1	6.3e-77	55.89	30-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia]	[more]
XP_004141524.1	2.0e-75	54.68	30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis sativus] >KGN...	[more]
XP_038889902.1	7.7e-75	54.68	30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispid...	[more]

BLAST of Lsi02G009400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30460.1	3.9e-40	55.00	cleavage and polyadenylation specificity factor 30	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..296
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G009400.1	Lsi02G009400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048024	regulation of mRNA splicing, via spliceosome
molecular_function	GO:0003723	RNA binding