Lsi02G008650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G008650
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal protein S14
Location	chr02: 8121698 .. 8122580 (-)
RNA-Seq Expression	Lsi02G008650
Synteny	Lsi02G008650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGTGTAATTCTGTGTTTTGATGATTGTAGGTGGTATGAAGGTGAAAGCTGACAGGGATGAGTCTTCCCCATACGCAGCTATGCTTGCAGCACAGGATGTTTCCCAGAGATGCAAGGTTCCATCCTCTTAATATTGTTTCTTAATTACCCGTTCCCCCATTTATATGGATTCTAATATTTATACCTGACTGTCTGAAAGTTTCCTTTGGAACTTATGATATCCCATTTTCTTCATTTCATCTTTACTGTTCGTGACTTTGTCTTTTCATCACTGAACAATATTACTTTTGTGTGGCCATATTTTTCACGAAACAGGAACTCGGTATTACTGCCCTTCATATTAAACTGCGTGCCACCGGAGGAAACAAGACCAAAACACCTGGCCCAGGTGCCCAGTCTGCACTTCGTGCTCTTGCTCGTTCTGGAATGAGGATTGGACGCATAGGTGAAGCCCTTGTCTCTGTAGCATCAACGAATTCAGATGAAAATACATCCATATATATACATTAATGCATTAATGCTGCACATTCACAACTTCACTATTAAACTGCATTTAACCGCATGCTCTATAAGGCTATAATCTAACTCCCATATACCTTTTTTATATGTTCCAGAGGATGTGACTCCAATTCCAACAGACAGCACTCGCAGAAAGGGTGGAAGAAGAGGAAGAAGGCTGTAAGCTTGTTCCTGGATTCCTCCTATTATGGCCGTGTCAGTGGTTTCTCTATGGTTCTGATGCTCCTTAAGCTTTGCTGCCTTAGTTTTTCAGAACTTCAACTTGGTTTTTATTATTGTTTTGTCAGGGATGTTTTGTCTTCGATTTTGTTTTATGTAGAACCGAGACTGTGAAAGAGGAATTTTTGGCTTTAGTTTAA

mRNA sequence

ATGGGAAGTGGTATGAAGGTGAAAGCTGACAGGGATGAGTCTTCCCCATACGCAGCTATGCTTGCAGCACAGGATGTTTCCCAGAGATGCAAGGAACTCGGTATTACTGCCCTTCATATTAAACTGCGTGCCACCGGAGGAAACAAGACCAAAACACCTGGCCCAGGTGCCCAGTCTGCACTTCGTGCTCTTGCTCGTTCTGGAATGAGGATTGGACGCATAGAGGATGTGACTCCAATTCCAACAGACAGCACTCGCAGAAAGGGTGGAAGAAGAGGAAGAAGGCTAACCGAGACTGTGAAAGAGGAATTTTTGGCTTTAGTTTAA

Coding sequence (CDS)

ATGGGAAGTGGTATGAAGGTGAAAGCTGACAGGGATGAGTCTTCCCCATACGCAGCTATGCTTGCAGCACAGGATGTTTCCCAGAGATGCAAGGAACTCGGTATTACTGCCCTTCATATTAAACTGCGTGCCACCGGAGGAAACAAGACCAAAACACCTGGCCCAGGTGCCCAGTCTGCACTTCGTGCTCTTGCTCGTTCTGGAATGAGGATTGGACGCATAGAGGATGTGACTCCAATTCCAACAGACAGCACTCGCAGAAAGGGTGGAAGAAGAGGAAGAAGGCTAACCGAGACTGTGAAAGAGGAATTTTTGGCTTTAGTTTAA

Protein sequence

MGSGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLTETVKEEFLALV

Homology

[Close]

BLAST of Lsi02G008650 vs. ExPASy Swiss-Prot
Match: P19950 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-44
Identity = 90/93 (96.77%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 57  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 116

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 97
           LARSGM+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 117 LARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 149

[Close]

BLAST of Lsi02G008650 vs. ExPASy Swiss-Prot
Match: Q9SIH0 (40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-44
Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRA
Sbjct: 58  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRA 117

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 97
           LARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 118 LARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Lsi02G008650 vs. ExPASy Swiss-Prot
Match: Q9CAX6 (40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-44
Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRA
Sbjct: 58  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRA 117

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 97
           LARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 118 LARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Lsi02G008650 vs. ExPASy Swiss-Prot
Match: P42036 (40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-44
Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRA
Sbjct: 58  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRA 117

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 97
           LARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 118 LARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Lsi02G008650 vs. ExPASy Swiss-Prot
Match: P19951 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.7e-44
Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 58  GMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 117

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 97
           LARSGM+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 118 LARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Lsi02G008650 vs. ExPASy TrEMBL
Match: A0A4Y1RA67 (Ribosomal protein S11 family protein OS=Prunus dulcis OX=3755 GN=Prudu_011250 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.0e-43
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 108 GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 167

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLTETVKEEFL 106
           LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL     E F+
Sbjct: 168 LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLVYETLEVFV 209

[Close]

BLAST of Lsi02G008650 vs. ExPASy TrEMBL
Match: A0A2P5WRP6 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA26900 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.0e-43
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 96  GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 155

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLTETV 101
           LARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL +++
Sbjct: 156 LARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRLPQSI 192

[Close]

BLAST of Lsi02G008650 vs. ExPASy TrEMBL
Match: A0A6A1W8Y3 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G005416 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.2e-43
Identity = 93/104 (89.42%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 18  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 77

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLTETVKEEFLAL 108
           LARSGM+IGRIEDVTPIP+DSTRRKGGRRGRRL  T+ E+   L
Sbjct: 78  LARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRLLPTLLEQITYL 121

[Close]

BLAST of Lsi02G008650 vs. ExPASy TrEMBL
Match: A0A6J1J4Y9 (40S ribosomal protein S14-2 OS=Cucurbita maxima OX=3661 GN=LOC111481789 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.8e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 58  GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 117

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 97
           LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 118 LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Lsi02G008650 vs. ExPASy TrEMBL
Match: A0A6J1KQN4 (40S ribosomal protein S14-2-like OS=Cucurbita maxima OX=3661 GN=LOC111495605 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.8e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 60  GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 119

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 97
           LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 120 LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152

[Close]

BLAST of Lsi02G008650 vs. NCBI nr
Match: KAG6573353.1 (hypothetical protein SDJN03_27240, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.3 bits (477), Expect = 3.4e-44
Identity = 101/116 (87.07%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 60  GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 119

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL-----------TETVKEEFLALV 109
           LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL              VKEEFL LV
Sbjct: 120 LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLDVLSSSLFYVELRLVKEEFLGLV 175

[Close]

BLAST of Lsi02G008650 vs. NCBI nr
Match: KAG6583920.1 (hypothetical protein SDJN03_19852, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.3 bits (469), Expect = 2.8e-43
Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 93  GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 152

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLTETVKE 103
           LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL+  V++
Sbjct: 153 LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLSARVEQ 191

[Close]

BLAST of Lsi02G008650 vs. NCBI nr
Match: PPR93772.1 (hypothetical protein GOBAR_AA26900 [Gossypium barbadense])

HSP 1 Score: 183.7 bits (465), Expect = 8.3e-43
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 96  GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 155

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLTETV 101
           LARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL +++
Sbjct: 156 LARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRLPQSI 192

[Close]

BLAST of Lsi02G008650 vs. NCBI nr
Match: BBH01089.1 (Ribosomal protein S11 family protein [Prunus dulcis])

HSP 1 Score: 183.7 bits (465), Expect = 8.3e-43
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 108 GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 167

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLTETVKEEFL 106
           LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL     E F+
Sbjct: 168 LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLVYETLEVFV 209

[Close]

BLAST of Lsi02G008650 vs. NCBI nr
Match: KAB1221343.1 (hypothetical protein CJ030_MR2G005416 [Morella rubra])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 93/104 (89.42%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 18  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 77

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLTETVKEEFLAL 108
           LARSGM+IGRIEDVTPIP+DSTRRKGGRRGRRL  T+ E+   L
Sbjct: 78  LARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRLLPTLLEQITYL 121

[Close]

BLAST of Lsi02G008650 vs. TAIR 10
Match: AT2G36160.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-45
Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRA
Sbjct: 58  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRA 117

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 97
           LARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 118 LARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Lsi02G008650 vs. TAIR 10
Match: AT3G11510.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-45
Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRA
Sbjct: 58  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRA 117

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 97
           LARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 118 LARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Lsi02G008650 vs. TAIR 10
Match: AT3G52580.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-45
Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 4   GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 63
           GMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRA
Sbjct: 58  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRA 117

Query: 64  LARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 97
           LARSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 118 LARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Lsi02G008650 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 25/78 (32.05%), Postives = 41/78 (52.56%), Query Frame = 0


Query: 15  SPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRI 74
           +P+AA  AA +  +   + G+    +++        K PG G  +ALRA+ RSG+ +  +
Sbjct: 68  TPFAAQTAAGNAIRAVVDQGMQRAEVRI--------KGPGLGRDAALRAIRRSGILLSFV 127

Query: 75  EDVTPIPTDSTRRKGGRR 93
            DVTP+P +  R    RR
Sbjct: 128 RDVTPMPHNGCRPPKKRR 137

The following BLAST results are available for this feature:

BLAST of Lsi02G008650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19950	1.2e-44	96.77	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]
Q9SIH0	2.0e-44	95.70	40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1	[more]
Q9CAX6	2.0e-44	95.70	40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1	[more]
P42036	2.0e-44	95.70	40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2	[more]
P19951	2.7e-44	95.70	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]

BLAST of Lsi02G008650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y1RA67	4.0e-43	92.16	Ribosomal protein S11 family protein OS=Prunus dulcis OX=3755 GN=Prudu_011250 PE...	[more]
A0A2P5WRP6	4.0e-43	94.85	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA26900 PE=3 SV...	[more]
A0A6A1W8Y3	5.2e-43	89.42	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G005416 PE=3 SV=1	[more]
A0A6J1J4Y9	6.8e-43	100.00	40S ribosomal protein S14-2 OS=Cucurbita maxima OX=3661 GN=LOC111481789 PE=3 SV=...	[more]
A0A6J1KQN4	6.8e-43	100.00	40S ribosomal protein S14-2-like OS=Cucurbita maxima OX=3661 GN=LOC111495605 PE=...	[more]

BLAST of Lsi02G008650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573353.1	3.4e-44	87.07	hypothetical protein SDJN03_27240, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6583920.1	2.8e-43	94.95	hypothetical protein SDJN03_19852, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PPR93772.1	8.3e-43	94.85	hypothetical protein GOBAR_AA26900 [Gossypium barbadense]	[more]
BBH01089.1	8.3e-43	92.16	Ribosomal protein S11 family protein [Prunus dulcis]	[more]
KAB1221343.1	1.1e-42	89.42	hypothetical protein CJ030_MR2G005416 [Morella rubra]	[more]

BLAST of Lsi02G008650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36160.1	1.5e-45	95.70	Ribosomal protein S11 family protein	[more]
AT3G11510.1	1.5e-45	95.70	Ribosomal protein S11 family protein	[more]
AT3G52580.1	1.5e-45	95.70	Ribosomal protein S11 family protein	[more]
ATCG00750.1	2.1e-04	32.05	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 1..96 e-value: 3.0E-45 score: 155.9
IPR001971	Ribosomal protein S11	PIRSF	PIRSF002131	RPS11p_RPS11a_RPS14e_RPS11o	coord: 1..94 e-value: 7.2E-23 score: 78.9
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 3..92 e-value: 4.1E-32 score: 110.9
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 4..96
None	No IPR available	PANTHER	PTHR11759:SF37	BNAA05G27530D PROTEIN	coord: 4..96
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 3..92
IPR018102	Ribosomal S11, conserved site	PROSITE	PS00054	RIBOSOMAL_S11	coord: 61..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G008650.1	Lsi02G008650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0048027	mRNA 5'-UTR binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome