Lsi02G008630 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G008630
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCoatomer subunit zeta
Locationchr02: 8094935 .. 8105799 (-)
RNA-Seq ExpressionLsi02G008630
SyntenyLsi02G008630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGATCCCAATCTCGTTCGCCAAATACACAATCCGACGGTGGAACAACATTCTATCAAAATTAATATCGTAGAACGCGCCGCAGGAGATCATAGATCTCTCTGTAGTGGCATTGCGAGATTTTCATTTGTCTGTGAAGCCATGGCAGTGAGAAGCTCCATAGAGTGGAAGATCAGTGTGTGAAAAAAGCAGAGAGAAACGAAAAATTCTGTGTTATGGGTTTCACAATGGGCTTGAATTTGCTTCTTCTTGTTGCCATGGTGGCCACCAATATTCTCTCTCTTTACCATCTCTCCTCTACGCTTCAATCCACAAAATCCCCTGTTTCACAGCCGGTTCCAGATCACTTAATCCGGCAACTTCAGACCATACGCGCCACCATAAACCACCTCACGCGCCTCCACCCGACGGCGGCGGCTTCTACATCGAAAACTAAACTCTCTATCCCTTCAGATCTCGTTCTGTATTCTCAATTTTCGCCAATTGCTTCATCTTGTCACAGTAACCCTGAGCTTCTTCATAGGTTTATGAATTACACTCCGTTTTCGAGTTGCCCTTCTGATTCTGATGTCGCTGAGGCTTTAATTCTTCGTGGGTGTCATCCACTTCCTCGTCGGCGGTGCTTTGCCAAAACCCCACAAAAACCTTCTTCTTCTTTGCCTCAAAATCCCTTTGCTTCTTCACTTCCGGAGTCTAATATTATTTGGGGGAAATATTCTTGTAAGGGTTTTGGCTGTTTGAATCGATTGAATCCGAATCTGGGGTTCGATCCTTCTCATGAAATCACCAAGTTTATGACCTTCAAGACGGAATTAGACCTTCCAATCCCTCAATTACTGCAGATTGCGAAAGCGGCTAACTCTGTTCTTCGTCTTGGACTTGACATTGGCGGTGGAACCGCCACTTTTGCTGCTAGAATGAAGCTCTACAATGTTACTATGGTCACTACGACTATGAACCTTGGCGCGCCGTACAATGAAGTCGCGGCGCTAAGGGGATTGGTGCCTTTGCACGTACCACTGCAGCAACGATTGCCCATTTTTGATGGAGTGATGGATCTGGTTCGGTGTGGCCATGCTGTGAACCGGTGGATTCCTGTGAAATCGATGGAGTTTTTATTTTATGATGTGGATAGAGTGTTGAGAGTTGGGGGTTACCTTTGGTTTGATCATTTCTTCAGCAAAGGGATGGATCTTGATAAAGTTTACTCTCCTTTGATCACCAAATTGGGTTACCGGAAGGTCAAGTGGGCAACGGCGAATAAGACCGACTTGGGCGGGTTGAAGAATGGAGAGGTTTACTTGACGGCATTGCTGCAAAAGCCAGTGCCAACATGAGGTAATGTTGCTTTAGGGATGTTCTTTGTTGTACTGCATTTTTTCCCCTGAAATGAACAAGACATGGTTTGAAATTCATAGCCTGCTGAGGAAGTGGTTCTGTGTTGTATTGTGAACTATGTCAATGAATTTGGGAATGTGGTACTTGTGAGTAGTAGAAGAAATGAGGTAGATCTTGATTAAACATCTTATGGAAACTTAGTATATGATCGAAAAGTTCAATGATCTAGTATAATCCATTCAGTTCTAGCCATGTTTATTCATGTCATAGCATCTCTTGGAGCTTGATGTAGGTCAAACTTGGAGAAACTTGTTTGAAGTTCTAGGTATCGCCATTGTTGGTTGCACTGAAAACACCATTTTAGGAACAGGGTTTAGGCTGATCCTGTCTTCTATGTAACATTCCTATGTATGTATGTATATATGTTTGTTTGTTTGTTTTGGTTGTGTTTGGGCTAGCATTCAAGTTTTCGAATAGATTAGTGGCATAGGAAAACTGTTAGTTTCCTTCATCCATTTTACTCGTGATCACCTCGATGGATAACCAGAGATTGAATTGAGAAGCCATGGATCTCTGGCTTTAGTCAAGATAAAAAAGCCCCCCTTTTTTCTCTTTTTCATAGTGCTTTGGCAAGATCATCTTGCAAGACCTAGGATGATGCATAGGGAGGCCCCCAATTCATAATGTTTTCATTCCTTGTTTCTTGTTTCCAATCTCTTTTTTTCTTGAGAACGTATGTGTCAGTATTGACTCTTTTTATCTAATCTGAAGATTAAAACATGTATTTTGGGAAGGAGTTTTCTTCTTCTCTTGTTCCTAATTTTATCAAAACATTAAGGATATTGTTATTTTTAGGCTAATTTATAAAAAAAAGAAGAAAAAAACACTCCTTAATTTTGCCATTTGTTTAAAAAATGCTTCTTTCAAAAGTAGCAATATTTTACTTGACCTTACATAAACGTTTCAAAACTACTTTTGTACTAGAAATCCTTCCAAATTTCCTATAGAAATTAGGACTTGGGTCAGTGTGTCAATCTAAATTTCCGTTCGAAGTCACCATCACATCATTTCATGTCCCAATTTTTGTCTAAAACTTTAAAAGATTTCTAGTGTAAGAGTAGTTTTGAAACATTTATTGGTAATACTAATAGTATAACTTTTGATAGAATAACAATATATTTTTTTTTAAACAAACGGCAAAGTGCGAATATAAAAGTTCTTACTCTGGAAAATAAGAAATAAGAAACCCGAAGCCGTAAATATTACCAAACAAGCACTAAGCTTATTGATTCTTGGATTGACTCTCATTAGTTCAAAGTATCTTTAATTGGAGGAGAAATTTGTAGCTCAAGTGGTTTCTTCTCACTTATTTGTTTCTATGATATCTCATAAATTGACATAGAACCAGAAAATTTCGAATCATTGATACAGGCAAAGGCAGAGAACCTGCGGCTTGGATTATACGAGGAAGCAATTATTGAATGAAATAATCAAATTCTTGTGTAAGAAGATGGGATTTTACATCAAAACTCAATTATTTATCCATCCACCATGGACTGCTCATCTGGCAAAGCTACTGAGTGTTTGAAGAAATAGAAACAAAATGGTGGTTGAAGAAAGGCATCCAGAAGGAGTTTGTGGAAATTTATGTTTGAAATAGAAGTTGTTACAGACAGACATAGTTATTTATTGTAGGTTCTTTCGGATTTATATATGGTTTTGTTTTGATTCTCTTGAGAATTGTTGTCTGTATTGTAGAAGTTAGGACTGACTATGCAAAATTGTAATGGTCAAAGTTCAGAAACAGAAGTTGTGATTAGACCATTTTTTTTTTTGGGGTAGAATTTGTTATACTAAAAATTCATATTGCAGTAAATTATATTTGAATTTGGAAACATGTGGCCTTTGAATTTATAGGGTTTTTTTTCGTCCGTCCGTTTATTCGTTCGTCTGTTCGTCTGTTCGTTTTTTTTTTCTTCCCTTTTTTTTTTGCAAGTCTTCAAAGATTTGGAATAATCATCAATGGTGAAAGCTTGGGTGTATGTTTTCCTTGGTTTAAAGGTAAATCTCCCAAAGATGTATTTTGAGTTTGTGAATCTGTGAATTTAAGATATGGTAGTGACTTATCTATGATTATGATTAATTGTAAATTTGTGGATTTAAGGTGATATAAATTGTTTTTGGAACTATGAGAGTATGCATATTCATGTCATTTATGGTTAGTCGCATCAAAATGACTTCAGAGTAGATATCCTCGTTATACTTGGATTTTTTTTTTGTTATATGAATTTTTTTTTTCATATTACGTTTATTTATTGTTTATATCAAAGATAACGGAGGTCTATATAATAAAATAATATTATAACTTTATAGTGTGTCAAATTGTAAATATAAAGGATGAATCTATCGTAGGTTGATAATATTTGAAATACACACGCTTCATAAGTCGACCATTATACGAGGTTATCGAAAAAAACGTGTTTTGTGGAGTCGACCATTATGCGGATGTGTTTGATGTATGGAAGCAATGCGCGTAGATATTCTTGAAGTTAAAGTTTTTGGAAGAATGAGAGAGAATTCTATCAAGGTTTAATTTTTCTAAACATTTCAAATGAAGGAGAATCCCTCCATTTATAGAGTTCTCAAGTGAGTTTTATGGGCTTGGGCTTGGTTGGTCCAGACATTGCCCTTGGCACAACTAATTGGATTTAGGTTTTAGTTGGATTTTAGGCCAAATTAAATCTATTTTTGACTCAATTGGACTTTAGCCCAAATATTAAAATAAAATTGGATCAAATTATTTTATTCAATTCAATAGTCATGATGAAAACACATGGCGTTATCGGAATTTACCAATTTATGTCTTCAATTTCAATTTGGGACACATGTCAACTTTTAGTTAGTCCCAAGTTCTATCATTTGAAATTTCGCTATTAATTTGATAAATGACATGACAATTTGTGATTGGTCCAAAATTTCTCATTCAACAACTATTATAGAAAATTGTAAAAAAAATATAACCACACACACATATATCTAAGTTATTTTTCAAATATAGAAAAATAAATCAAACTATTTATAAATATAAAAGAATTTTACTGTCAATCAGCGATGGAACGCGTTGAAAGGGTTTTTTTTTTTAAATCTAAATTTTGTTTTTACTGTCAAACACATTCCCCTTATCATCCCATGGTTCCCTCCACAACGAATATCTTAACATAATTTAATTGATTAGAACATTATATTTTAAACTAAAAGATTAAGGATTTGTTTTATGTTTTCAGATTCACTGAGTTCAGCAAATATGTGTTTGGAGGACAACTTGAATTCTATTTCTAAAAACTGTTTTAAGATTCTGTGATTCGAACGGTGCAAATTCTAAAAACAACATTTTTATGTTTTCATTATATCCATATTTTAAATTTTAAAATTTAAAATGCAAAATTATATTAAATAAAAATAACAACATTTAGAAATACAATATGTCATGTTATAAACTCAATTCATTTTAAAAAACGTAATATGTATTAGGTAATGTATTACAAATTATATAATATTACGAAATAATAATTATGATTTTTTTAACATAAATCATATTCATAAATAAATTAATAATAATTTATTGTCAATTAAATATTAGTGAACAACTACAACTAGTTTTATGATTTATAAATATATAGTTTGAAACACATTTTAAACCATTGTTTACATTCAAATTCAATTTCTAAATTTGCTACCAAACACATATATGAAAACATTAAATACAACATTGTTTTCATTGAATTCTTTGTTTTCAAATTTTTATTTTCAAATTCTCTACCAAATAGACCTGGTTCAAAATCATTCATACATATAGTTAAATTTTAAAAATTACAACAAGAAGGACCACATATAAATTTAGACATACATTTTTTTTCATCTTCTTTCTTTTACTCTATATTCTAGAGTAATTGATATTCGGTATTTCTACCACACTGATTTATTTTTTTGGTTCAACAATATGTCGGGTGGAGATCTCGTTGATTTAAAATTATATATAAAGTACTTATAGTGTAATGATTTAATGACAAGGGTTTATATAAATGCATTGAATTATTGATATTTACTCTATAGTCTTTACTGATTAAAAAAAAAGCATATTATCGAACAAAAAAGTCATTTGGGGAAAAGGTTGCAACATTGTGATGGCAACTCAACCAACCAAATCTTTTTTAATGGTTAGTATTATACATGTCAAGTTTTATAAGATTAACAAATGAATTAAATTGTAATAGTTGAATAATTTTAAGGCTTTGATAGGAACAAAATTAATAATTCAGAGATGGTTTGTGAATTTTTCAATATTTGAAGGCTTAATCACGAAATATTGTTAGTTAAAAGTGGTAACAGATGAAATTAAAAATTTGAAAATGTGATTCTAATGACTAGTTAAAGTTAAAGATTTAAATCTCAACCTCATCTCATTTATTGAACTTAAAAAAAAAAAAAATTAGTTTTCGGATTTTGAGTATAAGTTTCACTCGATTTCCATATTTCAAAATGTTACACATTTATCTATGAATTCTAAATTTAATTTTTATTTTTTCAATCACGAGCTTAATTTTCATTTGCTCCTTAAGTTTCATAATATTACATTTTTACCTTTGAGTTTTGAACCTTGTTTTCATTTGGTCTACAAGTTTCAATATTTACCCTTTTAATCTAGATTTTTCATGAGACATTTCTAATTCTTAGTGTTAATATGTATTAATTAATTTAATAGAACTAAAAGAATGGTAATTAGTTTATTAATTTTAAAATTTCACTTTATAATTATTTTAGATTAATTAATTAAAAGTTAATGTCAAAGACCAATTTAAGAATTAGTGAAAATTCAAGGGTAAAACTATAAAATATTGACACCTAGGGACCAAATGAAACTAAATTCAAACTCAAAAGTAAAAGTGTAACATTTTAAAACTTAAGAACTAATAAAAATTAAATTTAGAACTTAGGTGTAAAAATGTAATATATTGAAATTTAGGAATCAAATAAAAATCAGACTCAAAACCCAAAACGGTATCTTCCAACAAAAAAAAATCAAAATTACAAAGTGGTCCATAACATAAATATTTAAGGAAACGAGGTCCAAATTTAATTATGGAAAAGCAAGGGTCTCGTTTTGAATTTTAGTTAACTTTGGGGACCGGCCGGAGTCGACGAAGTATTTGGAACAGAGTCTCCTATTTTCGATTTTCGTTCTGTGGCCTCTCAATAACGCGAGAGAGATCCGACGGCGTTCGAACTCCCGAAGAATAATTTCCCGGGAAAAATTTTCACTAACCAAATGGTCAGTTTCATTCTTCTTTTTCAACTGATAATTTCTTTGTTTCATACTTCTATTACTTATTCGTCGGATTCAGCATTTAAACTTGTTTTGTAGTAACTATCTGTGGATTTTCGGGGATGAACATTGATGTTAGGGTTATGGAGTTGTCAGTTATGTTCGACGATTTTTGACTTTTGATTGGTTGATGCCTTAGTAGATCTGACTCCTGAGCTCATTTTAACAATGTGTTCGTAGGCACAGATTGATCTCTGAACTTACTAAGTTGATTCGGATTTTAGTCTTTGCATGGAAGGATCTTGTTAATTTCGTCGGAAGATTTGAATTGTCTGTGCATTACTTCCTTCGTATCGAGTTTGTGATTTGTCTACGAATCTAGCCGATGAGTTTAAGATTTTTATCTTTCGCTTAGACAAATCTTAATTTAGAATTAATCGCACTTTATGAGATTCGTCTTCTCGGTTCATTTCATGTCGATTGAAAATGTAGTGGAAATGCTTGAAGCAGGTAGGAAGATCTTGATTTGTATAGCATCTGCTCTATAAGAATCTTTGTGAAACTCTTTCAGAAGGCTACTTAAACTAGAATTCCGATGTATATTTCTAAAAGAATATATATATTTCTCAAAATCTAGAATTCCGATGTAGCTGCTAGTTTCTGAATGTGCTTCGTGACTTAGCTTTTTATGTTTCTCAGACAAGATTGCTGTGACAACGATTATATAAGGAAAAAAACCATCCGGTTCACCAAAAAGGTTATTTACCTCCTCAATCCGAACATGTTTGCTTTATTATATGCAGGAATCTTGCCCTTCCATTAAAAACATTCTTCTTTTGGATTCCGAAGGGAAGCGTGTAGCTGTCAAGTATTATTCTGATGACTGGCCTACAAATAGTGCAAAGGAAGCTTTTGAGAAAGCCGTTTTCATCAAAACTCAGAAGACTAATGCTCGAACAGAGGGTAGATACCTTTTCATGTATTGGTTTCTAACTGTTTTTTGTGAAAGTCTGTATCCCTAATCATGTTAGCTTCTCCTATTTAATTCAATTTCAATATCATTAGTCACTGTAAGGAAACTTCTGAATTTTTCAGTAGTCAAATTATTAGTTGGTTTATCCACAATCATTGTTTTTTGCCATGAGACTAAGAATTATTTTTTCAATCACATTCTCGTGACTATCAGTAGCTGGGTTAGTCATTTTCTATTTTGATCTTTGCATTCTTTAAAAAAATAAAAATAAAAATATGTTAGACCATCTCCCAGTCTAACACCATTTTGTAGAATACAACACTTTGTTTTTTTTATGCCTTACATGGTTTGTGAGTTCCTTTTCCACATTCTAACTTGAAATTCACTTTAACAGCGGAGATAGCAATGTTTGAGAACAATATAGTGGTTTACAAGTTTGCTCAGGACCTTCATTTTTTTGTCACGGGTGGAGAAGATGAAAATGAGCTCATTTTAGCATCTGTTCTTCAGGGTTTTTTTGATGCTGTGGGCATTCTTCTTAGGTCTTGACACTATTCTTATATATTTTTAAAATTTTGGATCCTTATGCACTGGCCCAATCTTACTGTTCTCAATCATGGTATTGTTAGATGTTTATTTTTGTTTCTTGTACTCCAGGGGTAATGTAGAAAAGAAGGAGGCACTTGAGAACTTGGACCTCATTTTACTGTGTCTTGATGAAATTATCGACGGAGGGTATCTCTCATATGCTCTTTCTGTATTACCTATTCTTTGCATTTCAATTGTGTGGCCTGTTTTTTCATTTCCTTCTATTGAGAATCAATCTTCTGTATCTTGATTGTGTCATTTTTTAGGGTTTAGGGTTTAGGGTAAGTTGATTATTACCCTCTTTAAGTTGATGGTCATGTCCATTCTTGCTAGACCAATTGTGAACATGAAAATTGAAGTATGAGTTGTAGATGATTATATATCAAGAATTTAAGGCAGTAGTAATGTCATTCCTAGTCAGGAAAGTAGTAATAGTTTCATGAATATGTGGAAAACAATTTGTTCATGAATGAGTAATATGCTTTCAAGTTGCTCGTCAGAAAAGTACTAATTTTGACTTCGTGGTTTGTTGCTGGATAAGGGATTTGGCTGTCCCACATCTCCATTTCGATTTGTCGCTATTGAATTGTTTACATAAATTGATGGATAAACTTCTTGCGATTATGTTGATAGTGGAGATGACACTATGTAATGCGAAGTATAAATTCCAATAAACTAGAACCCTAGAGCGGTGCTAATTGGAGCTACTAACTCAGCTGACCAGCTCTTCATTTGTAGGCTATAATCTGTTTGTTTACCGTCGTTGATAAATGTAGCAGAAAATTAATTACACAAAACTCTGTTTCAGTAGCACCCATTTGTAATTGTAATATTACTATAATAACATTCATGTTATGATATAACTCCGCTGAGCAGAGCATCTAGATTAAACTATCATATTTTCTTTATTTCTTTCTCAAGTGGATAAATAACTGGACAACAGATGCCTTGCATGCGTCAACTCAAACAGATAATTTTACCAATAATTGTTTTAATCATGAGATAAGAAAGTTACTAATTGCTTTTCTAATTATTAAAACTCCATCTCTTGATATGCGTACTGGTAACCATCTTTTGATGGAAGACTACAAACCATTTAAATTTGATTGATTTATTTTCTCGCAAGGTTCATAAATAAATTTCTTTTCATCTGAATATTCTAGGTTCGATGTTTTCATTGGCTCTCGTGAAGGGTTATTATCACTCTGCTTTTGTGAAATTGCAATTAATAGTTCTTAACCTTCTTTTCACAAATTATCTTGGCATTATGGAACGCATTAATTGCAGAAGAAAGTGGTAACTAGAGAATGTTTTAACTGTTCGTTTCTGTATTTTTCAGCATTATTCTCGAGACGGATGCAAATGTCATTGCAGGGAAGGTCGCAAGTCACAATATTGACAGTGGTGCTCCTTTGTCTGAGCAGGTACCGTACAATATTTCAGATTCTTACGGCTTGTTTCGTTACAATTTGGTTTCTTTTCTATGTTTTGTGTTTTCAGATTCATTGTGTTTAACAATTATGTTTTGGGTAGATAATCTAGATTATGTTGTTGAGAACTGTTTTTGGGTGGTGTGATTCAAAAAGTGAAAATTCTGAAAACAACATGTTTATGTTTTCAGTTTATCTAATTTAAAATGTAAAATTATATTAAAAAAAGATTAAAACGTTTAGAAATAGTATTTCATGTTATAAACTCATTTCTTTGATTAATTATGTTTTTTGTAATACATAATAAATTATATAATATTACAAAAAAATAATTATACAAAAAAAAAAAAAACTTAACCTAAAACATGTTCATAAATTCATTAATAATAGTTTATATTTAACCTAATATTTAGAAAGTAACTACAACTAGTTTTTGGTTTATAAATATATTATCAAATACATTTAAAATAATTAATTAAATTAGAATCCAATTTCTGAATATGCTACCAAATACATATATGAAAACAAATGAAATACAAATTCTGTCTTCATGGAATCACCTGTTTTCAAATTCTTGTTTTCCGATTACCTACCCAACATGCCTTTATCTTTTACTTTTTCTCCCTCTCATTTCCAGTATCTTGAAAGATTTCTCTCTCTGTCTCTTGCAGACAATAAGTCAAGCATTGGCCACAGCTCGCGAACATCTAGCAAGATCTCTTCTCAAGTAATATGTTTTCCTGATAAAAGTGAGTGGCAAGGACAATCCCCCACACCAAAAAAGGAAAAAAAAAGGTTCAGGTTGAGTTGGCCTGTTGTTTTGGTAAAAAATGATTAATGGTTGAGTTATCAATGGCCTCATGTTTGTATATTTAGCTCATACTCTGCTGCTTGCCTTTTGGTAAACCTGATTTTGGATTTGAGCAGATGTGGTACATTGCGGGACTGGCGTTAAATGTTATTATATGTGGTGTTACCAGTTTTTTTTGAAACAATGTTTTCCTTTTTTGGCCTTTTAATTTTGTGGTCATTAGCCCAATGAGGGCGACCCAAGCAGGTTTTCAAATGTGGCGTTGCCTGATTTGTTGCCTGATTTCTTGAATAGAACTCGGGATTTTTGCTAGAATGGCTTTTGGATCAACATAGCTTGAGTTAGGATGCAATTAACACTACATCAGTTGTAACATTGGTATAATAGTAAACCTCATTCCTTA

mRNA sequence

CCGATCCCAATCTCGTTCGCCAAATACACAATCCGACGGTGGAACAACATTCTATCAAAATTAATATCGTAGAACGCGCCGCAGGAGATCATAGATCTCTCTGTAGTGGCATTGCGAGATTTTCATTTGTCTGTGAAGCCATGGCAGTGAGAAGCTCCATAGAGTGGAAGATCAGTGTGTGAAAAAAGCAGAGAGAAACGAAAAATTCTGTGTTATGGGTTTCACAATGGGCTTGAATTTGCTTCTTCTTGTTGCCATGGTGGCCACCAATATTCTCTCTCTTTACCATCTCTCCTCTACGCTTCAATCCACAAAATCCCCTGTTTCACAGCCGGTTCCAGATCACTTAATCCGGCAACTTCAGACCATACGCGCCACCATAAACCACCTCACGCGCCTCCACCCGACGGCGGCGGCTTCTACATCGAAAACTAAACTCTCTATCCCTTCAGATCTCGTTCTGTATTCTCAATTTTCGCCAATTGCTTCATCTTGTCACAGTAACCCTGAGCTTCTTCATAGGTTTATGAATTACACTCCGTTTTCGAGTTGCCCTTCTGATTCTGATGTCGCTGAGGCTTTAATTCTTCGTGGGTGTCATCCACTTCCTCGTCGGCGGTGCTTTGCCAAAACCCCACAAAAACCTTCTTCTTCTTTGCCTCAAAATCCCTTTGCTTCTTCACTTCCGGAGTCTAATATTATTTGGGGGAAATATTCTTGTAAGGGTTTTGGCTGTTTGAATCGATTGAATCCGAATCTGGGGTTCGATCCTTCTCATGAAATCACCAAGTTTATGACCTTCAAGACGGAATTAGACCTTCCAATCCCTCAATTACTGCAGATTGCGAAAGCGGCTAACTCTGTTCTTCGTCTTGGACTTGACATTGGCGGTGGAACCGCCACTTTTGCTGCTAGAATGAAGCTCTACAATGTTACTATGGTCACTACGACTATGAACCTTGGCGCGCCGTACAATGAAGTCGCGGCGCTAAGGGGATTGGTGCCTTTGCACGTACCACTGCAGCAACGATTGCCCATTTTTGATGGAGTGATGGATCTGGTTCGGTGTGGCCATGCTGTGAACCGGTGGATTCCTGTGAAATCGATGGAGTTTTTATTTTATGATGTGGATAGAGTGTTGAGAGTTGGGGGTTACCTTTGGTTTGATCATTTCTTCAGCAAAGGGATGGATCTTGATAAAGTTTACTCTCCTTTGATCACCAAATTGGGTTACCGGAAGGTCAAGTGGGCAACGGCGAATAAGACCGACTTGGGCGGGTTGAAGAATGGAGAGGTTTACTTGACGGCATTGCTGCAAAAGCCAGTGCCAACATGAGGGGTAATGTAGAAAAGAAGGAGGCACTTGAGAACTTGGACCTCATTTTACTGTGTCTTGATGAAATTATCGACGGAGGGTATCTCTCATATGCTCTTTCTGGTTTAGGGTTTAGGCATTATTCTCGAGACGGATGCAAATGTCATTGCAGGGAAGGTCGCAAGTCACAATATTGACAGTGGTGCTCCTTTGTCTGAGCAGACAATAAGTCAAGCATTGGCCACAGCTCGCGAACATCTAGCAAGATCTCTTCTCAAGTAATATGTTTTCCTGATAAAAGTGAGTGGCAAGGACAATCCCCCACACCAAAAAAGGAAAAAAAAAGGTTCAGGTTGAGTTGGCCTGTTGTTTTGGTAAAAAATGATTAATGGTTGAGTTATCAATGGCCTCATGTTTGTATATTTAGCTCATACTCTGCTGCTTGCCTTTTGGTAAACCTGATTTTGGATTTGAGCAGATGTGGTACATTGCGGGACTGGCGTTAAATGTTATTATATGTGGTGTTACCAGTTTTTTTTGAAACAATGTTTTCCTTTTTTGGCCTTTTAATTTTGTGGTCATTAGCCCAATGAGGGCGACCCAAGCAGGTTTTCAAATGTGGCGTTGCCTGATTTGTTGCCTGATTTCTTGAATAGAACTCGGGATTTTTGCTAGAATGGCTTTTGGATCAACATAGCTTGAGTTAGGATGCAATTAACACTACATCAGTTGTAACATTGGTATAATAGTAAACCTCATTCCTTA

Coding sequence (CDS)

ATGAGGGGTAATGTAGAAAAGAAGGAGGCACTTGAGAACTTGGACCTCATTTTACTGTGTCTTGATGAAATTATCGACGGAGGGTATCTCTCATATGCTCTTTCTGGTTTAGGGTTTAGGCATTATTCTCGAGACGGATGCAAATGTCATTGCAGGGAAGGTCGCAAGTCACAATATTGA

Protein sequence

MRGNVEKKEALENLDLILLCLDEIIDGGYLSYALSGLGFRHYSRDGCKCHCREGRKSQY
Homology
[Close]
BLAST of Lsi02G008630 vs. ExPASy Swiss-Prot
Match: Q6Z844 (Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.5e-06
Identity = 22/30 (73.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGGYL 31
           +RG+VEK+ ALENLDLILLC+DEI+DGG +
Sbjct: 108 LRGDVEKRTALENLDLILLCIDEIVDGGII 137

[Close]
BLAST of Lsi02G008630 vs. ExPASy Swiss-Prot
Match: Q9MAX5 (Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 7.8e-06
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGG 29
           +R NV+K+ ALENLDLILLCLDEI+DGG
Sbjct: 103 LRNNVDKRTALENLDLILLCLDEIVDGG 130

[Close]
BLAST of Lsi02G008630 vs. ExPASy Swiss-Prot
Match: Q84LG4 (Coatomer subunit zeta-2 OS=Arabidopsis thaliana OX=3702 GN=At3g09800 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 8.7e-05
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGG 29
           +R NVEK EALENLDLI LCLDE++D G
Sbjct: 105 LRSNVEKMEALENLDLIFLCLDEMVDQG 132

[Close]
BLAST of Lsi02G008630 vs. ExPASy Swiss-Prot
Match: Q8H1F4 (Coatomer subunit zeta-3 OS=Arabidopsis thaliana OX=3702 GN=At4g08520 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 8.7e-05
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGG 29
           +R NVEK EALENLDLI LCLDE++D G
Sbjct: 107 LRNNVEKMEALENLDLIFLCLDEMVDQG 134

[Close]
BLAST of Lsi02G008630 vs. ExPASy Swiss-Prot
Match: Q940S5 (Coatomer subunit zeta-1 OS=Arabidopsis thaliana OX=3702 GN=At1g60970 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.3e-04
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGG 29
           +R NV+K+EAL+NLDLI L  DEIIDGG
Sbjct: 103 LRSNVDKREALDNLDLIFLSFDEIIDGG 130

[Close]
BLAST of Lsi02G008630 vs. ExPASy TrEMBL
Match: A0A2H5N486 (Coatomer subunit zeta OS=Citrus unshiu OX=55188 GN=CUMW_014070 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-06
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGGYLSYAL 35
           +RGNV+KKEALENLDLILLCLDEI+DGGY +  L
Sbjct: 103 LRGNVDKKEALENLDLILLCLDEIVDGGYATIIL 136

[Close]
BLAST of Lsi02G008630 vs. ExPASy TrEMBL
Match: A0A067GRM8 (Coatomer subunit zeta OS=Citrus sinensis OX=2711 GN=CISIN_1g030448mg PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.1e-06
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGGY 30
           +RGNV+KKEALENLDLILLCLDEI+DGGY
Sbjct: 103 LRGNVDKKEALENLDLILLCLDEIVDGGY 131

[Close]
BLAST of Lsi02G008630 vs. ExPASy TrEMBL
Match: V4TQQ9 (Coatomer subunit zeta OS=Citrus clementina OX=85681 GN=CICLE_v10016911mg PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.1e-06
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGGY 30
           +RGNV+KKEALENLDLILLCLDEI+DGGY
Sbjct: 103 LRGNVDKKEALENLDLILLCLDEIVDGGY 131

[Close]
BLAST of Lsi02G008630 vs. ExPASy TrEMBL
Match: I1L0A4 (Coatomer subunit zeta OS=Glycine max OX=3847 GN=100527022 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 25/29 (86.21%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGGY 30
           +RGNV+KKEALENLDLILLC+DEI+DGGY
Sbjct: 105 LRGNVDKKEALENLDLILLCIDEIVDGGY 133

[Close]
BLAST of Lsi02G008630 vs. ExPASy TrEMBL
Match: I1MFY8 (Coatomer subunit zeta OS=Glycine max OX=3847 GN=547467 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 25/29 (86.21%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGGY 30
           +RGNV+KKEALENLDLILLC+DEI+DGGY
Sbjct: 105 LRGNVDKKEALENLDLILLCIDEIVDGGY 133

[Close]
BLAST of Lsi02G008630 vs. NCBI nr
Match: XP_020246127.1 (coatomer subunit zeta-1-like isoform X2 [Asparagus officinalis])

HSP 1 Score: 60.5 bits (145), Expect = 5.8e-06
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGGYLSYALSGLGFRHYSRDGCKCHCREGRK 57
           +R NV+K+ ALENLDLILLC+DEI+DGG        LG +  S +  KCHC EG K
Sbjct: 120 LRNNVDKRTALENLDLILLCIDEIVDGGSFL-----LGLQDRSGNRSKCHCWEGCK 170

[Close]
BLAST of Lsi02G008630 vs. NCBI nr
Match: GAY35063.1 (hypothetical protein CUMW_014070 [Citrus unshiu])

HSP 1 Score: 59.7 bits (143), Expect = 9.9e-06
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGGYLSYAL 35
           +RGNV+KKEALENLDLILLCLDEI+DGGY +  L
Sbjct: 103 LRGNVDKKEALENLDLILLCLDEIVDGGYATIIL 136

[Close]
BLAST of Lsi02G008630 vs. NCBI nr
Match: ESR62868.1 (hypothetical protein CICLE_v10016911mg [Citrus clementina] >KDO78087.1 hypothetical protein CISIN_1g030448mg [Citrus sinensis])

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGGY 30
           +RGNV+KKEALENLDLILLCLDEI+DGGY
Sbjct: 103 LRGNVDKKEALENLDLILLCLDEIVDGGY 131

[Close]
BLAST of Lsi02G008630 vs. NCBI nr
Match: XP_038895636.1 (coatomer subunit zeta-1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-05
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGGYL 31
           +RGNVEKKEALENLDLILLCLDEIIDGG +
Sbjct: 103 LRGNVEKKEALENLDLILLCLDEIIDGGII 132

[Close]
BLAST of Lsi02G008630 vs. NCBI nr
Match: XP_023542943.1 (coatomer subunit zeta-1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-05
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGGYL 31
           +RGNVEKKEALENLDLILLCLDEIIDGG +
Sbjct: 103 LRGNVEKKEALENLDLILLCLDEIIDGGII 132

[Close]
BLAST of Lsi02G008630 vs. TAIR 10
Match: AT3G09800.1 (SNARE-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 6.2e-06
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGG 29
           +R NVEK EALENLDLI LCLDE++D G
Sbjct: 105 LRSNVEKMEALENLDLIFLCLDEMVDQG 132

[Close]
BLAST of Lsi02G008630 vs. TAIR 10
Match: AT4G08520.1 (SNARE-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 6.2e-06
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGG 29
           +R NVEK EALENLDLI LCLDE++D G
Sbjct: 107 LRNNVEKMEALENLDLIFLCLDEMVDQG 134

[Close]
BLAST of Lsi02G008630 vs. TAIR 10
Match: AT1G60970.1 (SNARE-like superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 2.3e-05
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 1   MRGNVEKKEALENLDLILLCLDEIIDGG 29
           +R NV+K+EAL+NLDLI L  DEIIDGG
Sbjct: 103 LRSNVDKREALDNLDLIFLSFDEIIDGG 130

The following BLAST results are available for this feature:
BLAST of Lsi02G008630 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6Z8443.5e-0673.33Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ2 PE=2 S... [more]
Q9MAX57.8e-0678.57Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ1 PE=2 S... [more]
Q84LG48.7e-0575.00Coatomer subunit zeta-2 OS=Arabidopsis thaliana OX=3702 GN=At3g09800 PE=2 SV=1[more]
Q8H1F48.7e-0575.00Coatomer subunit zeta-3 OS=Arabidopsis thaliana OX=3702 GN=At4g08520 PE=2 SV=1[more]
Q940S53.3e-0471.43Coatomer subunit zeta-1 OS=Arabidopsis thaliana OX=3702 GN=At1g60970 PE=2 SV=1[more]
BLAST of Lsi02G008630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2H5N4864.8e-0679.41Coatomer subunit zeta OS=Citrus unshiu OX=55188 GN=CUMW_014070 PE=3 SV=1[more]
A0A067GRM88.1e-0689.66Coatomer subunit zeta OS=Citrus sinensis OX=2711 GN=CISIN_1g030448mg PE=3 SV=1[more]
V4TQQ98.1e-0689.66Coatomer subunit zeta OS=Citrus clementina OX=85681 GN=CICLE_v10016911mg PE=3 SV... [more]
I1L0A41.4e-0586.21Coatomer subunit zeta OS=Glycine max OX=3847 GN=100527022 PE=3 SV=1[more]
I1MFY81.4e-0586.21Coatomer subunit zeta OS=Glycine max OX=3847 GN=547467 PE=3 SV=1[more]
BLAST of Lsi02G008630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_020246127.15.8e-0655.36coatomer subunit zeta-1-like isoform X2 [Asparagus officinalis][more]
GAY35063.19.9e-0679.41hypothetical protein CUMW_014070 [Citrus unshiu][more]
ESR62868.11.7e-0589.66hypothetical protein CICLE_v10016911mg [Citrus clementina] >KDO78087.1 hypotheti... [more]
XP_038895636.12.9e-0590.00coatomer subunit zeta-1-like isoform X2 [Benincasa hispida][more]
XP_023542943.12.9e-0590.00coatomer subunit zeta-1-like isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Lsi02G008630 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G09800.16.2e-0675.00SNARE-like superfamily protein [more]
AT4G08520.16.2e-0675.00SNARE-like superfamily protein [more]
AT1G60970.12.3e-0571.43SNARE-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.450.60coord: 1..33
e-value: 4.6E-5
score: 25.3
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 3..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G008630.1Lsi02G008630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component GO:0030126 COPI vesicle coat
cellular_component GO:0000139 Golgi membrane