Lsi02G008070 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G008070
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	chr02: 7498601 .. 7499137 (+)
RNA-Seq Expression	Lsi02G008070
Synteny	Lsi02G008070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCGAAGCGAGAAAAGATTCGACGGAAGCCGCCGGGTCATCGTCGAGGACGGCGGTGGGGACGGCGCTGAGTCGGTACGAATCACAAAAAAGGCGTGACTGGAACACGTTCGGACAGTATTTGAAGAATCAAACGCCGCCGGTTTCGCTGTCACAGTGTAACTGCAACCACGTGCTGGAATTCCTGAGGTACCTGGACCAGTTCGGAAAAACTAAGGTTCATTTACATGGGTGTGTTTTTTTCGGGCAGCCTGACCCACCTGCCCCTTGTACCTGCCCACTCCGTCAAGCATGGGGAAGTCTCGACGCTCTGATCGGACGGCTTAGAGCCGCGTACGAGGAACACGGCGGATCACCGGAAACAAATCCTTTTGGAAATGGAGCAATTCGAGTGTATTTGAGGGAAGTTAAAGAGTGTCAAGCTAAAGCAAGAGGAATTCCGTACAAGAAAAAGAAGAGAAAAAGAACTCAATTGAAATCCAACGAAGATGACAACAACAACAACAAACAACCCATCAAGCATCTCCCTTGA

mRNA sequence

ATGTCAACCGAAGCGAGAAAAGATTCGACGGAAGCCGCCGGGTCATCGTCGAGGACGGCGGTGGGGACGGCGCTGAGTCGGTACGAATCACAAAAAAGGCGTGACTGGAACACGTTCGGACAGTATTTGAAGAATCAAACGCCGCCGGTTTCGCTGTCACAGTGTAACTGCAACCACGTGCTGGAATTCCTGAGGTACCTGGACCAGTTCGGAAAAACTAAGGTTCATTTACATGGGTGTGTTTTTTTCGGGCAGCCTGACCCACCTGCCCCTTGTACCTGCCCACTCCGTCAAGCATGGGGAAGTCTCGACGCTCTGATCGGACGGCTTAGAGCCGCGTACGAGGAACACGGCGGATCACCGGAAACAAATCCTTTTGGAAATGGAGCAATTCGAGTGTATTTGAGGGAAGTTAAAGAGTGTCAAGCTAAAGCAAGAGGAATTCCGTACAAGAAAAAGAAGAGAAAAAGAACTCAATTGAAATCCAACGAAGATGACAACAACAACAACAAACAACCCATCAAGCATCTCCCTTGA

Coding sequence (CDS)

ATGTCAACCGAAGCGAGAAAAGATTCGACGGAAGCCGCCGGGTCATCGTCGAGGACGGCGGTGGGGACGGCGCTGAGTCGGTACGAATCACAAAAAAGGCGTGACTGGAACACGTTCGGACAGTATTTGAAGAATCAAACGCCGCCGGTTTCGCTGTCACAGTGTAACTGCAACCACGTGCTGGAATTCCTGAGGTACCTGGACCAGTTCGGAAAAACTAAGGTTCATTTACATGGGTGTGTTTTTTTCGGGCAGCCTGACCCACCTGCCCCTTGTACCTGCCCACTCCGTCAAGCATGGGGAAGTCTCGACGCTCTGATCGGACGGCTTAGAGCCGCGTACGAGGAACACGGCGGATCACCGGAAACAAATCCTTTTGGAAATGGAGCAATTCGAGTGTATTTGAGGGAAGTTAAAGAGTGTCAAGCTAAAGCAAGAGGAATTCCGTACAAGAAAAAGAAGAGAAAAAGAACTCAATTGAAATCCAACGAAGATGACAACAACAACAACAAACAACCCATCAAGCATCTCCCTTGA

Protein sequence

MSTEARKDSTEAAGSSSRTAVGTALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNEDDNNNNKQPIKHLP

Homology

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BLAST of Lsi02G008070 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.4e-66
Identity = 119/154 (77.27%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 4   EARKDSTEAAGSSSRTAVGTALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNHVLEF 63
           E  K   E++GS          SRYESQKRRDWNTFGQYLKNQ PPV +S C+CNHVL+F
Sbjct: 6   ERGKSLMESSGSEPPVTP----SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDF 65

Query: 64  LRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPET 123
           LRYLDQFGKTKVH+ GC+F+GQP+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PET
Sbjct: 66  LRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPET 125

Query: 124 NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR 158
           NPF +GAIRVYLREV+ECQAKARGIPYKKKK+K+
Sbjct: 126 NPFASGAIRVYLREVRECQAKARGIPYKKKKKKK 155

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BLAST of Lsi02G008070 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 6.8e-61
Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTAVGT-ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNH 60
           ++  A   +T ++ SSS    GT  LSRYE+QKRRDWNTFGQYL+N  PP+SLS+C+  H
Sbjct: 21  IAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 80

Query: 61  VLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGG 120
           VLEFLRYLDQFGKTKVH H C FFG P+PPAPC CPLRQAWGSLDALIGRLRAA+EE+GG
Sbjct: 81  VLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGG 140

Query: 121 SPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR 158
           SPETNPFG  A+R+YLREV++ QAKARGI Y+KKKRKR
Sbjct: 141 SPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of Lsi02G008070 vs. ExPASy Swiss-Prot
Match: Q9SN52 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LSH9 PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.8e-61
Identity = 109/136 (80.15%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 25  LSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFG 84
           LSRYESQKRRDWNTF QYLK+Q PP+ +SQ +  HVL FLRYLDQFGKTKVH   CVFFG
Sbjct: 35  LSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFG 94

Query: 85  QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH-GGSPETNPFGNGAIRVYLREVKECQA 144
           QPDPP PCTCPL+QAWGSLDALIGRLRAAYEEH GGSP+TNPF NG+IRV+LREV+E QA
Sbjct: 95  QPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQA 154

Query: 145 KARGIPYKKKKRKRTQ 160
           KARGIPY+KKKR++T+
Sbjct: 155 KARGIPYRKKKRRKTK 170

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BLAST of Lsi02G008070 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.9e-59
Identity = 104/146 (71.23%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 24  ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFF 83
           ALSRYESQKRRDWNTF QYL+NQ PPV +SQC  NH+L+FL+YLDQFGKTKVH+HGCVFF
Sbjct: 37  ALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFF 96

Query: 84  GQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQA 143
           GQ +P   C CPL+QAWGSLDALIGRLRAA+EE+GG PE NPF  G IRV+LREV++ QA
Sbjct: 97  GQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQA 156

Query: 144 KARGIPYK--KKKRKRTQLKSNEDDN 168
           KARG+PYK  KK++KR  +KS++ ++
Sbjct: 157 KARGVPYKKRKKRKKRNPMKSHDGED 182

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BLAST of Lsi02G008070 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.3e-59
Identity = 108/155 (69.68%), Postives = 126/155 (81.29%), Query Frame = 0


Query: 9   STEAAGSSSRTAVG----TALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNHVLEFL 68
           S+ AAG +   A        LSRYESQKRRDWNTF QYL+N  PP++L++C+  HV+EFL
Sbjct: 9   SSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFL 68

Query: 69  RYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETN 128
           RYLDQFGKTKVH  GC F+GQP PP PC CPLRQAWGSLDALIGRLRAAYEE GG+PE+N
Sbjct: 69  RYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESN 128

Query: 129 PFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQ 160
           PF   A+R+YLREV++ QAKARGIPY+KKKRKR+Q
Sbjct: 129 PFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQ 163

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BLAST of Lsi02G008070 vs. ExPASy TrEMBL
Match: A0A1S4E614 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103503180 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.5e-91
Identity = 172/183 (93.99%), Postives = 173/183 (94.54%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTAVGT--ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60
           MSTEARKD TE AGSSSRT   T  ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN
Sbjct: 1   MSTEARKDPTE-AGSSSRTTTTTTAALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60

Query: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120
           HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG
Sbjct: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNEDD---NNNNKQPIK 179
           GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSN+DD   NNNNKQPIK
Sbjct: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNNKQPIK 180

[Close]

BLAST of Lsi02G008070 vs. ExPASy TrEMBL
Match: A0A5A7UU18 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002260 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90
Identity = 172/184 (93.48%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTAVGT--ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60
           MSTEARKD TE AGSSSRT   T  ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN
Sbjct: 1   MSTEARKDPTE-AGSSSRTTTTTTAALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60

Query: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120
           HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG
Sbjct: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNEDD----NNNNKQPI 179
           GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSN+DD    NNNNKQPI
Sbjct: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNNNKQPI 180

[Close]

BLAST of Lsi02G008070 vs. ExPASy TrEMBL
Match: A0A0A0M097 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G474480 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.2e-88
Identity = 165/186 (88.71%), Postives = 166/186 (89.25%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTAVGTALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNHV 60
           MSTE RKD TEA  SS  T    ALSRYESQKRRDWNTFGQYLKNQTP VSLSQCNCNHV
Sbjct: 1   MSTEGRKDPTEAGSSSRATTTTAALSRYESQKRRDWNTFGQYLKNQTPAVSLSQCNCNHV 60

Query: 61  LEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGS 120
           LEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGS
Sbjct: 61  LEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGS 120

Query: 121 PETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNEDDNNNN--------KQ 179
           PETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSN+DD NNN        KQ
Sbjct: 121 PETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNNTNSNSKQ 180

[Close]

BLAST of Lsi02G008070 vs. ExPASy TrEMBL
Match: A0A6J1CET4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Momordica charantia OX=3673 GN=LOC111010841 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.9e-84
Identity = 161/185 (87.03%), Postives = 165/185 (89.19%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTAVG-------TALSRYESQKRRDWNTFGQYLKNQTPPVSLS 60
           MSTEARKDSTEAAGSSS    G       TALSRYESQKRRDWNTFGQYLKNQTPPV+LS
Sbjct: 1   MSTEARKDSTEAAGSSSSMRPGAAADHPTTALSRYESQKRRDWNTFGQYLKNQTPPVALS 60

Query: 61  QCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           QCNCNHVLEFLRYLDQFGKTKVHL GCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  QCNCNHVLEFLRYLDQFGKTKVHLPGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNEDDNNNNKQP 179
           YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR QLK N DD+ ++K  
Sbjct: 121 YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQLKPNNDDHQDHK-- 180

[Close]

BLAST of Lsi02G008070 vs. ExPASy TrEMBL
Match: A0A6J1GSW5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111457135 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82
Identity = 159/193 (82.38%), Postives = 166/193 (86.01%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTAV--------GTALSRYESQKRRDWNTFGQYLKNQTPPVSL 60
           MST+ RKDSTE AGSSS TAV          ALSRYESQKRRDWNTFGQYLKNQ PPV L
Sbjct: 1   MSTQPRKDSTE-AGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPL 60

Query: 61  SQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRA 120
            +CNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRA
Sbjct: 61  FECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRA 120

Query: 121 AYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNED------- 178
           AYEEHGGSPE+NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR Q K+N+D       
Sbjct: 121 AYEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGG 180

[Close]

BLAST of Lsi02G008070 vs. NCBI nr
Match: XP_038896042.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida] >XP_038896043.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida])

HSP 1 Score: 347.1 bits (889), Expect = 9.3e-92
Identity = 172/184 (93.48%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTAVG--TALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60
           MSTE RKDST  AGSSSRTA G  TALSRYESQKRRDWNTFGQYLKNQTPPV LSQCNCN
Sbjct: 1   MSTEGRKDSTTEAGSSSRTAAGTTTALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCN 60

Query: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120
           HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG
Sbjct: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNEDD----NNNNKQPI 179
           GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSN+DD    NNNNKQPI
Sbjct: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDNNNINNNNKQPI 180

[Close]

BLAST of Lsi02G008070 vs. NCBI nr
Match: XP_008465553.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_016903415.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 172/183 (93.99%), Postives = 173/183 (94.54%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTAVGT--ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60
           MSTEARKD TE AGSSSRT   T  ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN
Sbjct: 1   MSTEARKDPTE-AGSSSRTTTTTTAALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60

Query: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120
           HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG
Sbjct: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNEDD---NNNNKQPIK 179
           GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSN+DD   NNNNKQPIK
Sbjct: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNNKQPIK 180

[Close]

BLAST of Lsi02G008070 vs. NCBI nr
Match: KAA0057039.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 342.4 bits (877), Expect = 2.3e-90
Identity = 172/184 (93.48%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTAVGT--ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60
           MSTEARKD TE AGSSSRT   T  ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN
Sbjct: 1   MSTEARKDPTE-AGSSSRTTTTTTAALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60

Query: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120
           HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG
Sbjct: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNEDD----NNNNKQPI 179
           GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSN+DD    NNNNKQPI
Sbjct: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNNNKQPI 180

[Close]

BLAST of Lsi02G008070 vs. NCBI nr
Match: XP_011657745.2 (LOW QUALITY PROTEIN: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus])

HSP 1 Score: 327.0 bits (837), Expect = 1.0e-85
Identity = 167/192 (86.98%), Postives = 169/192 (88.02%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTAVGT-----ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQC 60
           MS+E RKD TE AGSSSRT   T     ALSRYESQKRRDWNTFGQYLKNQTP VSLSQC
Sbjct: 1   MSSEGRKDPTE-AGSSSRTTTTTTTTTAALSRYESQKRRDWNTFGQYLKNQTPAVSLSQC 60

Query: 61  NCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYE 120
           NCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAW SLDALIGRLRAAYE
Sbjct: 61  NCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWXSLDALIGRLRAAYE 120

Query: 121 EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNEDDNNNN----- 179
           EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSN+DD NNN     
Sbjct: 121 EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNNNT 180

[Close]

BLAST of Lsi02G008070 vs. NCBI nr
Match: XP_031737260.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus] >KAE8653217.1 hypothetical protein Csa_020024 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 162/177 (91.53%), Postives = 164/177 (92.66%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTAVGT-----ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQC 60
           MS+E RKD TE AGSSSRT   T     ALSRYESQKRRDWNTFGQYLKNQTP VSLSQC
Sbjct: 1   MSSEGRKDPTE-AGSSSRTTTTTTTTTAALSRYESQKRRDWNTFGQYLKNQTPAVSLSQC 60

Query: 61  NCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYE 120
           NCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYE
Sbjct: 61  NCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNEDDNNNNKQ 173
           EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSN+DD NNNKQ
Sbjct: 121 EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNKQ 176

[Close]

BLAST of Lsi02G008070 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-67
Identity = 119/154 (77.27%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 4   EARKDSTEAAGSSSRTAVGTALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNHVLEF 63
           E  K   E++GS          SRYESQKRRDWNTFGQYLKNQ PPV +S C+CNHVL+F
Sbjct: 6   ERGKSLMESSGSEPPVTP----SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDF 65

Query: 64  LRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPET 123
           LRYLDQFGKTKVH+ GC+F+GQP+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PET
Sbjct: 66  LRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPET 125

Query: 124 NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR 158
           NPF +GAIRVYLREV+ECQAKARGIPYKKKK+K+
Sbjct: 126 NPFASGAIRVYLREVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of Lsi02G008070 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-67
Identity = 119/154 (77.27%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 4   EARKDSTEAAGSSSRTAVGTALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNHVLEF 63
           E  K   E++GS          SRYESQKRRDWNTFGQYLKNQ PPV +S C+CNHVL+F
Sbjct: 6   ERGKSLMESSGSEPPVTP----SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDF 65

Query: 64  LRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPET 123
           LRYLDQFGKTKVH+ GC+F+GQP+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PET
Sbjct: 66  LRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPET 125

Query: 124 NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR 158
           NPF +GAIRVYLREV+ECQAKARGIPYKKKK+K+
Sbjct: 126 NPFASGAIRVYLREVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of Lsi02G008070 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 235.0 bits (598), Expect = 4.8e-62
Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTAVGT-ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNH 60
           ++  A   +T ++ SSS    GT  LSRYE+QKRRDWNTFGQYL+N  PP+SLS+C+  H
Sbjct: 21  IAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 80

Query: 61  VLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGG 120
           VLEFLRYLDQFGKTKVH H C FFG P+PPAPC CPLRQAWGSLDALIGRLRAA+EE+GG
Sbjct: 81  VLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGG 140

Query: 121 SPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR 158
           SPETNPFG  A+R+YLREV++ QAKARGI Y+KKKRKR
Sbjct: 141 SPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of Lsi02G008070 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 234.6 bits (597), Expect = 6.3e-62
Identity = 109/136 (80.15%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 25  LSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFG 84
           LSRYESQKRRDWNTF QYLK+Q PP+ +SQ +  HVL FLRYLDQFGKTKVH   CVFFG
Sbjct: 35  LSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFG 94

Query: 85  QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH-GGSPETNPFGNGAIRVYLREVKECQA 144
           QPDPP PCTCPL+QAWGSLDALIGRLRAAYEEH GGSP+TNPF NG+IRV+LREV+E QA
Sbjct: 95  QPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQA 154

Query: 145 KARGIPYKKKKRKRTQ 160
           KARGIPY+KKKR++T+
Sbjct: 155 KARGIPYRKKKRRKTK 170

[Close]

BLAST of Lsi02G008070 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 228.8 bits (582), Expect = 3.4e-60
Identity = 104/146 (71.23%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 24  ALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFF 83
           ALSRYESQKRRDWNTF QYL+NQ PPV +SQC  NH+L+FL+YLDQFGKTKVH+HGCVFF
Sbjct: 37  ALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFF 96

Query: 84  GQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQA 143
           GQ +P   C CPL+QAWGSLDALIGRLRAA+EE+GG PE NPF  G IRV+LREV++ QA
Sbjct: 97  GQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQA 156

Query: 144 KARGIPYK--KKKRKRTQLKSNEDDN 168
           KARG+PYK  KK++KR  +KS++ ++
Sbjct: 157 KARGVPYKKRKKRKKRNPMKSHDGED 182

The following BLAST results are available for this feature:

BLAST of Lsi02G008070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	2.4e-66	77.27	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9LW68	6.8e-61	72.15	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9SN52	8.8e-61	80.15	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9ZVA0	4.9e-59	71.23	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XED8	8.3e-59	69.68	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]

BLAST of Lsi02G008070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E614	8.5e-91	93.99	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7UU18	1.1e-90	93.48	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0M097	5.2e-88	88.71	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G474480 PE=3 S...	[more]
A0A6J1CET4	5.9e-84	87.03	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Momordica charantia OX=3673 ...	[more]
A0A6J1GSW5	1.1e-82	82.38	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of Lsi02G008070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896042.1	9.3e-92	93.48	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida] >XP_0388960...	[more]
XP_008465553.1	1.8e-90	93.99	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_0...	[more]
KAA0057039.1	2.3e-90	93.48	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa]	[more]
XP_011657745.2	1.0e-85	86.98	LOW QUALITY PROTEIN: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativu...	[more]
XP_031737260.1	1.1e-84	91.53	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus] >KAE8653217.1...	[more]

BLAST of Lsi02G008070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	1.7e-67	77.27	Protein of unknown function (DUF640)	[more]
AT2G42610.2	1.7e-67	77.27	Protein of unknown function (DUF640)	[more]
AT3G23290.2	4.8e-62	72.15	Protein of unknown function (DUF640)	[more]
AT4G18610.1	6.3e-62	80.15	Protein of unknown function (DUF640)	[more]
AT1G78815.1	3.4e-60	71.23	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 19..140 e-value: 4.4E-64 score: 214.3
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 27..154 score: 79.553154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..178
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 13..169
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 13..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G008070.1	Lsi02G008070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus