Lsi02G007860 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G007860
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	D-aminoacyl-tRNA deacylase
Location	chr02: 7259252 .. 7261170 (-)
RNA-Seq Expression	Lsi02G007860
Synteny	Lsi02G007860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTATATAGAAGTTTAGAGACATAATAAACTATATATACATATAGCATTGTTATAAATTTTTGTAATATTAAATATATTTTCTTTCTATTTTTCGTCAACATGGTTCCTTCCTACAGGTTACAATTTTACAAAATCCCAAAAAAGATATAGAATGAATAGCGTAGCAAACCTGCCATTGTTTGCAGCCAGCGTAGGTACCAAGCGAACCACACTGTTCAGAAACAACAAACTACAGCCGATTAGATCCATGAGAGCTATTGTTCAGAGAGTCGCCTCGGCAAGCGTCGAGGTCTCTTCTCTCTCTCTCTCTTTCTTTTCCCCTCTTTATGCTTTTCTAAATCGCCAGTGTGAGATACTGCATTTCGCAGGTCGATGGCCGCACCGTTTCGGAGATCGGGCCGGGACTCCTCGTGCTCGTCGGCCTTCATGACTCCGACTCCGACACCGACGCTGAATACATGTAATCTACTCTACCCATCTCTCACTCCCTCTCTTATCTATACTAATTCCATGCTCCATTGAAACTTCTTCTTCTTATCACAAAGCTACTTCTTCCTTCTTTTCAAATTGGGTTTCAGATGCCGTAAGGTCCTAAATATGAGGTTGTTCCCAAATGAGAGTACCGGCAAAGCTTGGGACTTAAACGTAATTTAACTATATAAGCACTCCTTGCTTCCTTATTGAGAAAAACAAAAGCTTCGGGATTTGCTTTACCACTTTCCTTGATATTTGTTGCAGGTAATGCAGAAAAACTACGAGGTTCTATTAGGTAAGTGAAAAGGGGTTTGCTTAGAACTTTGTACCTAGAATGTGAATTAGTGTCAATCAACTTATTAACTTATACTCGGTGGAATGTGGATTGGAACCAGTTAGCCAGTTTACACTGTATGGAATGTTGAAGGGGAACAAGCCGGACTTTCATGTGGCAATGCCTCCCCAAAGAGCTAAACCCTTCTATGCTTCTGTGGTTGAGAGGTTCGGTAAATCCTACAACCCAGATGCGATAAAAGGTAATCTATCTCCCCTAATTATTTCAAATTCAATCTCTCCCAAATTGGAATTTGTTCAAGTTCAACCAGTAGTATAAAGAGTTTACTGAATCTTGTCGTTGTTCCCTTTTCCTGTGGGCAGATGGAGTGTTTGGAGCAATGATGAAGGTAATCTCACTATGGTCAGTTTTGAATTCCAAATAACTTTGATATTTACTAGATTTTACAGTTCTGATATTTTGGTCACTGATGTTTAAGAAGGTCAATTTGGTGAATGATGGCCCAGTTACAATGCAGATCGACTCCCAACCATCTAAGTAAGCAAATCAACCAACATACGAGCTCTCCTGCCTGGTGCAGGATGTTCTGGAAAATGGTAATTTGACAGTGATTTTCATAACTTTCATTTCAGGAATACAGTTGAAGTTTCAGAAGACTCATAATGGGTTTCTATTGGATTCTACAATTTAAGATCTGGCTGCGATTCTTTGTGGGCTTGCAAGTTGAAGCGTTGATGGAATGTCAGATTCTTTTCATCAGGTGGAAATGATTGTTCTCTTGTGCTACTGCTATCTACTAATTTCCATCAGCATTGGCCGTGGGGTTGTATGCTAACTTACTCCTTTGACAATTGACAATATCTAATTTTCTTTCTCATACCTTTCCATCTCGAAGACCCAGTGCAAGCCGCCAAGGCTTCGCCAAGAATCCTTTTTGGGGACTTTAAAAAAAATTCAGATCCCTTTGTTAGTTTTAGACCTATTCAATTCTATTCCCATGCTTAAACTAAACAAATGTCAGCAAAATCCAGATCAATAACCAGTATGATCTAATTTAAAGATGCAAATAAAGTACATCGTTCTTTTGGAGGGTGGTAGGCTCATGTAAGATAAACTCGTTATGAAGCATGGCACAAATGGTTTAAAT

mRNA sequence

TTCTTATATAGAAGTTTAGAGACATAATAAACTATATATACATATAGCATTGTTATAAATTTTTGTAATATTAAATATATTTTCTTTCTATTTTTCGTCAACATGGTTCCTTCCTACAGGTTACAATTTTACAAAATCCCAAAAAAGATATAGAATGAATAGCGTAGCAAACCTGCCATTGTTTGCAGCCAGCGTAGGTACCAAGCGAACCACACTGTTCAGAAACAACAAACTACAGCCGATTAGATCCATGAGAGCTATTGTTCAGAGAGTCGCCTCGGCAAGCGTCGAGGTCGATGGCCGCACCGTTTCGGAGATCGGGCCGGGACTCCTCGTGCTCGTCGGCCTTCATGACTCCGACTCCGACACCGACGCTGAATACATATGCCGTAAGGTCCTAAATATGAGGTTGTTCCCAAATGAGAGTACCGGCAAAGCTTGGGACTTAAACGTAATGCAGAAAAACTACGAGGTTCTATTAGGTAACCAGTTTACACTGTATGGAATGTTGAAGGGGAACAAGCCGGACTTTCATGTGGCAATGCCTCCCCAAAGAGCTAAACCCTTCTATGCTTCTGTGGTTGAGAGGTTCGGTAAATCCTACAACCCAGATGCGATAAAAGATGGAGTGTTTGGAGCAATGATGAAGAAGGTCAATTTGGTGAATGATGGCCCAGTTACAATGCAGATCGACTCCCAACCATCTAAGAATACAGTTGAAGTTTCAGAAGACTCATAATGGGTTTCTATTGGATTCTACAATTTAAGATCTGGCTGCGATTCTTTGTGGGCTTGCAAGTTGAAGCGTTGATGGAATGTCAGATTCTTTTCATCAGGTGGAAATGATTGTTCTCTTGTGCTACTGCTATCTACTAATTTCCATCAGCATTGGCCGTGGGGTTGTATGCTAACTTACTCCTTTGACAATTGACAATATCTAATTTTCTTTCTCATACCTTTCCATCTCGAAGACCCAGTGCAAGCCGCCAAGGCTTCGCCAAGAATCCTTTTTGGGGACTTTAAAAAAAATTCAGATCCCTTTGTTAGTTTTAGACCTATTCAATTCTATTCCCATGCTTAAACTAAACAAATGTCAGCAAAATCCAGATCAATAACCAGTATGATCTAATTTAAAGATGCAAATAAAGTACATCGTTCTTTTGGAGGGTGGTAGGCTCATGTAAGATAAACTCGTTATGAAGCATGGCACAAATGGTTTAAAT

Coding sequence (CDS)

ATGAATAGCGTAGCAAACCTGCCATTGTTTGCAGCCAGCGTAGGTACCAAGCGAACCACACTGTTCAGAAACAACAAACTACAGCCGATTAGATCCATGAGAGCTATTGTTCAGAGAGTCGCCTCGGCAAGCGTCGAGGTCGATGGCCGCACCGTTTCGGAGATCGGGCCGGGACTCCTCGTGCTCGTCGGCCTTCATGACTCCGACTCCGACACCGACGCTGAATACATATGCCGTAAGGTCCTAAATATGAGGTTGTTCCCAAATGAGAGTACCGGCAAAGCTTGGGACTTAAACGTAATGCAGAAAAACTACGAGGTTCTATTAGGTAACCAGTTTACACTGTATGGAATGTTGAAGGGGAACAAGCCGGACTTTCATGTGGCAATGCCTCCCCAAAGAGCTAAACCCTTCTATGCTTCTGTGGTTGAGAGGTTCGGTAAATCCTACAACCCAGATGCGATAAAAGATGGAGTGTTTGGAGCAATGATGAAGAAGGTCAATTTGGTGAATGATGGCCCAGTTACAATGCAGATCGACTCCCAACCATCTAAGAATACAGTTGAAGTTTCAGAAGACTCATAA

Protein sequence

MNSVANLPLFAASVGTKRTTLFRNNKLQPIRSMRAIVQRVASASVEVDGRTVSEIGPGLLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLGNQFTLYGMLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMMKKVNLVNDGPVTMQIDSQPSKNTVEVSEDS

Homology

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BLAST of Lsi02G007860 vs. ExPASy Swiss-Prot
Match: Q54EY1 (D-aminoacyl-tRNA deacylase OS=Dictyostelium discoideum OX=44689 GN=dtd PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.5e-41
Identity = 81/150 (54.00%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 33  MRAIVQRVASASVEVDGRTVSEIGPGLLVLVGLHDSDSDTDAEYICRKVLNMRLFPNEST 92
           M+AI+QRV S+SV V+G  +SEI  GL+ L+G+   D+  DAEYI RK+LN+RL+ NE  
Sbjct: 1   MKAIIQRVKSSSVTVEGEVISEIKQGLMCLIGIGRDDTKEDAEYITRKILNLRLWKNEDG 60

Query: 93  GKAWDLNVMQKNYEVLLGNQFTLYGMLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNP 152
            K WD +V Q +YE+L  +QFTL+  LKGNK  +H+AM P+ +K FY   +E   KSY P
Sbjct: 61  TKNWDRSVQQMDYEILFVSQFTLFAQLKGNKQSYHLAMAPELSKQFYLDFLENAKKSYKP 120

Query: 153 DAIKDGVFGAMMKKVNLVNDGPVTMQIDSQ 183
           + IKDG FGAMM  V L+NDGPVT+Q+DS+
Sbjct: 121 EKIKDGRFGAMM-DVQLINDGPVTIQLDSK 149

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BLAST of Lsi02G007860 vs. ExPASy Swiss-Prot
Match: Q9DD18 (D-aminoacyl-tRNA deacylase 1 OS=Mus musculus OX=10090 GN=Dtd1 PE=1 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 2.3e-38
Identity = 79/149 (53.02%), Postives = 110/149 (73.83%), Query Frame = 0


Query: 33  MRAIVQRVASASVEVDGRTVSEIGPGLLVLVGLHDSDSDTDAEYICRKVLNMRLFPNEST 92
           M+A+VQRV  ASV V G  +S IG G+ VL+G+   DS  + E++ RK+LN+R+F +ES 
Sbjct: 1   MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISMEDSQKELEHMVRKILNLRVFEDES- 60

Query: 93  GKAWDLNVMQKNYEVLLGNQFTLYGMLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNP 152
           GK W  +VM K YEVL  +QFTL  +LKGNKPDFH+AMP ++A+ FY S +E+  KSY P
Sbjct: 61  GKHWSKSVMDKEYEVLCVSQFTLQCVLKGNKPDFHLAMPTEQAESFYNSFLEQLRKSYRP 120

Query: 153 DAIKDGVFGAMMKKVNLVNDGPVTMQIDS 182
           + I+DG FGA M +V++ NDGPVT++++S
Sbjct: 121 ELIRDGKFGAYM-QVHIQNDGPVTIELES 147

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BLAST of Lsi02G007860 vs. ExPASy Swiss-Prot
Match: Q8TEA8 (D-aminoacyl-tRNA deacylase 1 OS=Homo sapiens OX=9606 GN=DTD1 PE=1 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-37
Identity = 77/149 (51.68%), Postives = 110/149 (73.83%), Query Frame = 0


Query: 33  MRAIVQRVASASVEVDGRTVSEIGPGLLVLVGLHDSDSDTDAEYICRKVLNMRLFPNEST 92
           M+A+VQRV  ASV V G  +S IG G+ VL+G+   D+  + E++ RK+LN+R+F +ES 
Sbjct: 1   MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDES- 60

Query: 93  GKAWDLNVMQKNYEVLLGNQFTLYGMLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNP 152
           GK W  +VM K YE+L  +QFTL  +LKGNKPDFH+AMP ++A+ FY S +E+  K+Y P
Sbjct: 61  GKHWSKSVMDKQYEILCVSQFTLQCVLKGNKPDFHLAMPTEQAEGFYNSFLEQLRKTYRP 120

Query: 153 DAIKDGVFGAMMKKVNLVNDGPVTMQIDS 182
           + IKDG FGA M +V++ NDGPVT++++S
Sbjct: 121 ELIKDGKFGAYM-QVHIQNDGPVTIELES 147

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BLAST of Lsi02G007860 vs. ExPASy Swiss-Prot
Match: Q2T9V8 (D-aminoacyl-tRNA deacylase 1 OS=Bos taurus OX=9913 GN=DTD1 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-37
Identity = 76/149 (51.01%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 33  MRAIVQRVASASVEVDGRTVSEIGPGLLVLVGLHDSDSDTDAEYICRKVLNMRLFPNEST 92
           M+A+VQRV  ASV V G  +S IG G+ VL+G+   D+  + E++ RK+LN+R+F +ES 
Sbjct: 1   MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDES- 60

Query: 93  GKAWDLNVMQKNYEVLLGNQFTLYGMLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNP 152
           GK W  +VM K YEVL  +QFTL  +LKGNKPDFH+AMP ++A+ FY   +E+  K+Y P
Sbjct: 61  GKHWSKSVMDKQYEVLCVSQFTLQCVLKGNKPDFHLAMPAEQAESFYKGFLEQLRKAYRP 120

Query: 153 DAIKDGVFGAMMKKVNLVNDGPVTMQIDS 182
           + +KDG FGA M +V++ NDGPVT++++S
Sbjct: 121 ELVKDGKFGAYM-QVHIQNDGPVTIELES 147

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BLAST of Lsi02G007860 vs. ExPASy Swiss-Prot
Match: F1QGC8 (D-aminoacyl-tRNA deacylase 1 OS=Danio rerio OX=7955 GN=dtd1 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.7e-37
Identity = 76/152 (50.00%), Postives = 109/152 (71.71%), Query Frame = 0


Query: 33  MRAIVQRVASASVEVDGRTVSEIGPGLLVLVGLHDSDSDTDAEYICRKVLNMRLFPNEST 92
           M+AI+QRV  ASV V    +S IG GL VL+G+   D+  D +Y+ RK+LN+R+F +E+ 
Sbjct: 1   MKAIIQRVTRASVTVGEEQISSIGRGLCVLLGISVEDTQKDVDYMVRKILNLRVFEDEN- 60

Query: 93  GKAWDLNVMQKNYEVLLGNQFTLYGMLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNP 152
           G+AW  +VM    EVL  +QFTL  +LKGNKPD+H AMP + A+PFY +++E+  ++Y P
Sbjct: 61  GRAWSRSVMDGELEVLCVSQFTLQCLLKGNKPDYHAAMPAELAQPFYNNMLEQLRETYKP 120

Query: 153 DAIKDGVFGAMMKKVNLVNDGPVTMQIDSQPS 185
           + IKDG FGA M +V + NDGPVT+Q++S P+
Sbjct: 121 ELIKDGQFGAKM-QVLIQNDGPVTIQLESPPA 150

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BLAST of Lsi02G007860 vs. ExPASy TrEMBL
Match: A0A0A0LS01 (D-aminoacyl-tRNA deacylase OS=Cucumis sativus OX=3659 GN=Csa_1G076620 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.1e-97
Identity = 185/196 (94.39%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MNSVANLPLFAASVGTKRTTLFR--NNKLQPIRSMRAIVQRVASASVEVDGRTVSEIGPG 60
           MNSVANLPLFAASV TKRTT+FR  NNKL+PIRSMRA+VQRVASASV+VDGRTVSEIGPG
Sbjct: 1   MNSVANLPLFAASVSTKRTTVFRFSNNKLRPIRSMRAVVQRVASASVQVDGRTVSEIGPG 60

Query: 61  LLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLGNQFTLYGM 120
           LLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLL +QFTLYGM
Sbjct: 61  LLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLVSQFTLYGM 120

Query: 121 LKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMMKKVNLVNDGPVTMQ 180
           LKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM KVNLVNDGPVTMQ
Sbjct: 121 LKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM-KVNLVNDGPVTMQ 180

Query: 181 IDSQPSKNTVEVSEDS 195
           IDSQPSKNTVE SEDS
Sbjct: 181 IDSQPSKNTVEASEDS 195

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BLAST of Lsi02G007860 vs. ExPASy TrEMBL
Match: A0A5A7UU37 (D-aminoacyl-tRNA deacylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002050 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.1e-95
Identity = 183/197 (92.89%), Postives = 187/197 (94.92%), Query Frame = 0


Query: 1   MNSVANLPLFAASVGTKRTTLFR---NNKLQPIRSMRAIVQRVASASVEVDGRTVSEIGP 60
           MNSVANLPLFAASV TKRTTLFR   N KL PIRSMRA+VQRVASASV+VDGRTVSEIGP
Sbjct: 1   MNSVANLPLFAASVSTKRTTLFRFSNNRKLHPIRSMRAVVQRVASASVQVDGRTVSEIGP 60

Query: 61  GLLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLGNQFTLYG 120
           GLLVLVGLH+SDSD DAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLL +QFTLYG
Sbjct: 61  GLLVLVGLHESDSDADAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLVSQFTLYG 120

Query: 121 MLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMMKKVNLVNDGPVTM 180
           MLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM KVNLVNDGPVTM
Sbjct: 121 MLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM-KVNLVNDGPVTM 180

Query: 181 QIDSQPSKNTVEVSEDS 195
           QIDSQPSKNTVE SEDS
Sbjct: 181 QIDSQPSKNTVEASEDS 196

[Close]

BLAST of Lsi02G007860 vs. ExPASy TrEMBL
Match: A0A1S3B6T2 (D-aminoacyl-tRNA deacylase OS=Cucumis melo OX=3656 GN=LOC103486664 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.1e-95
Identity = 183/197 (92.89%), Postives = 187/197 (94.92%), Query Frame = 0


Query: 1   MNSVANLPLFAASVGTKRTTLFR---NNKLQPIRSMRAIVQRVASASVEVDGRTVSEIGP 60
           MNSVANLPLFAASV TKRTTLFR   N KL PIRSMRA+VQRVASASV+VDGRTVSEIGP
Sbjct: 1   MNSVANLPLFAASVSTKRTTLFRFSNNRKLHPIRSMRAVVQRVASASVQVDGRTVSEIGP 60

Query: 61  GLLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLGNQFTLYG 120
           GLLVLVGLH+SDSD DAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLL +QFTLYG
Sbjct: 61  GLLVLVGLHESDSDADAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLVSQFTLYG 120

Query: 121 MLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMMKKVNLVNDGPVTM 180
           MLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM KVNLVNDGPVTM
Sbjct: 121 MLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM-KVNLVNDGPVTM 180

Query: 181 QIDSQPSKNTVEVSEDS 195
           QIDSQPSKNTVE SEDS
Sbjct: 181 QIDSQPSKNTVEASEDS 196

[Close]

BLAST of Lsi02G007860 vs. ExPASy TrEMBL
Match: A0A6J1CHG7 (D-aminoacyl-tRNA deacylase OS=Momordica charantia OX=3673 GN=LOC111010928 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 9.0e-94
Identity = 177/194 (91.24%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MNSVANLPLFAASVGTKRTTLFRNNKLQPIRSMRAIVQRVASASVEVDGRTVSEIGPGLL 60
           MNSVANLPL+AASVGTKRT L  N K QP RSMRA+VQRV SASV+VDGRTVSEIGPGLL
Sbjct: 1   MNSVANLPLYAASVGTKRTRLLSNKKTQPTRSMRAVVQRVVSASVQVDGRTVSEIGPGLL 60

Query: 61  VLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLGNQFTLYGMLK 120
           VLVGLH+SDSD DAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLL +QFTLYGMLK
Sbjct: 61  VLVGLHESDSDADAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLVSQFTLYGMLK 120

Query: 121 GNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMMKKVNLVNDGPVTMQID 180
           GNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM KVNLVNDGPVTMQID
Sbjct: 121 GNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM-KVNLVNDGPVTMQID 180

Query: 181 SQPSKNTVEVSEDS 195
           SQPSKNTVE  EDS
Sbjct: 181 SQPSKNTVEAQEDS 193

[Close]

BLAST of Lsi02G007860 vs. ExPASy TrEMBL
Match: A0A6J1EH34 (D-aminoacyl-tRNA deacylase OS=Cucurbita moschata OX=3662 GN=LOC111434135 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.9e-91
Identity = 176/195 (90.26%), Postives = 184/195 (94.36%), Query Frame = 0


Query: 1   MNSVANLPLFAASVGTKRTTLFRN-NKLQPIRSMRAIVQRVASASVEVDGRTVSEIGPGL 60
           MNSVA LPLFAASVGTKRTT+F N  K+QPIRSMRA+VQRVASASVEVDGRTVSEIGPGL
Sbjct: 1   MNSVAYLPLFAASVGTKRTTVFSNKRKIQPIRSMRAVVQRVASASVEVDGRTVSEIGPGL 60

Query: 61  LVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLGNQFTLYGML 120
           LVLVGLHDSDS++DAEYICRKVLNMRLFPN+STGKAWDLNVMQKNYEVLL +QFTLYGML
Sbjct: 61  LVLVGLHDSDSESDAEYICRKVLNMRLFPNQSTGKAWDLNVMQKNYEVLLVSQFTLYGML 120

Query: 121 KGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMMKKVNLVNDGPVTMQI 180
           KGNKPDFHVAMPPQRAKPFYASVVERFGK Y PDAIKDGVFGAMM KVNLVNDGPVTMQI
Sbjct: 121 KGNKPDFHVAMPPQRAKPFYASVVERFGKYYTPDAIKDGVFGAMM-KVNLVNDGPVTMQI 180

Query: 181 DSQPSKNTVEVSEDS 195
           +SQPSKN VE SE S
Sbjct: 181 ESQPSKNMVEASEGS 194

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BLAST of Lsi02G007860 vs. NCBI nr
Match: KGN64710.1 (hypothetical protein Csa_014221 [Cucumis sativus])

HSP 1 Score: 363.6 bits (932), Expect = 1.0e-96
Identity = 185/196 (94.39%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MNSVANLPLFAASVGTKRTTLFR--NNKLQPIRSMRAIVQRVASASVEVDGRTVSEIGPG 60
           MNSVANLPLFAASV TKRTT+FR  NNKL+PIRSMRA+VQRVASASV+VDGRTVSEIGPG
Sbjct: 1   MNSVANLPLFAASVSTKRTTVFRFSNNKLRPIRSMRAVVQRVASASVQVDGRTVSEIGPG 60

Query: 61  LLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLGNQFTLYGM 120
           LLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLL +QFTLYGM
Sbjct: 61  LLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLVSQFTLYGM 120

Query: 121 LKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMMKKVNLVNDGPVTMQ 180
           LKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM KVNLVNDGPVTMQ
Sbjct: 121 LKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM-KVNLVNDGPVTMQ 180

Query: 181 IDSQPSKNTVEVSEDS 195
           IDSQPSKNTVE SEDS
Sbjct: 181 IDSQPSKNTVEASEDS 195

[Close]

BLAST of Lsi02G007860 vs. NCBI nr
Match: XP_011653368.2 (D-aminoacyl-tRNA deacylase [Cucumis sativus])

HSP 1 Score: 363.6 bits (932), Expect = 1.0e-96
Identity = 185/196 (94.39%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MNSVANLPLFAASVGTKRTTLFR--NNKLQPIRSMRAIVQRVASASVEVDGRTVSEIGPG 60
           MNSVANLPLFAASV TKRTT+FR  NNKL+PIRSMRA+VQRVASASV+VDGRTVSEIGPG
Sbjct: 47  MNSVANLPLFAASVSTKRTTVFRFSNNKLRPIRSMRAVVQRVASASVQVDGRTVSEIGPG 106

Query: 61  LLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLGNQFTLYGM 120
           LLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLL +QFTLYGM
Sbjct: 107 LLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLVSQFTLYGM 166

Query: 121 LKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMMKKVNLVNDGPVTMQ 180
           LKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM KVNLVNDGPVTMQ
Sbjct: 167 LKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM-KVNLVNDGPVTMQ 226

Query: 181 IDSQPSKNTVEVSEDS 195
           IDSQPSKNTVE SEDS
Sbjct: 227 IDSQPSKNTVEASEDS 241

[Close]

BLAST of Lsi02G007860 vs. NCBI nr
Match: XP_008442903.1 (PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase [Cucumis melo] >KAA0057021.1 D-tyrosyl-tRNA(Tyr) deacylase [Cucumis melo var. makuwa])

HSP 1 Score: 358.2 bits (918), Expect = 4.4e-95
Identity = 183/197 (92.89%), Postives = 187/197 (94.92%), Query Frame = 0


Query: 1   MNSVANLPLFAASVGTKRTTLFR---NNKLQPIRSMRAIVQRVASASVEVDGRTVSEIGP 60
           MNSVANLPLFAASV TKRTTLFR   N KL PIRSMRA+VQRVASASV+VDGRTVSEIGP
Sbjct: 1   MNSVANLPLFAASVSTKRTTLFRFSNNRKLHPIRSMRAVVQRVASASVQVDGRTVSEIGP 60

Query: 61  GLLVLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLGNQFTLYG 120
           GLLVLVGLH+SDSD DAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLL +QFTLYG
Sbjct: 61  GLLVLVGLHESDSDADAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLVSQFTLYG 120

Query: 121 MLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMMKKVNLVNDGPVTM 180
           MLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM KVNLVNDGPVTM
Sbjct: 121 MLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM-KVNLVNDGPVTM 180

Query: 181 QIDSQPSKNTVEVSEDS 195
           QIDSQPSKNTVE SEDS
Sbjct: 181 QIDSQPSKNTVEASEDS 196

[Close]

BLAST of Lsi02G007860 vs. NCBI nr
Match: XP_038894530.1 (D-aminoacyl-tRNA deacylase [Benincasa hispida])

HSP 1 Score: 357.1 bits (915), Expect = 9.8e-95
Identity = 181/194 (93.30%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1   MNSVANLPLFAASVGTKRTTLFRNNKLQPIRSMRAIVQRVASASVEVDGRTVSEIGPGLL 60
           MNSVANLPLFAASV TKRTTLF NNKLQPIRSMRA+VQRVASASVEVDGRTVSEIGPGLL
Sbjct: 1   MNSVANLPLFAASVSTKRTTLFGNNKLQPIRSMRAVVQRVASASVEVDGRTVSEIGPGLL 60

Query: 61  VLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLGNQFTLYGMLK 120
           VLVGLHDSDSD DAEYICRKVLNMRLFPNEST +AWDLNVMQKNYEVLL +QFTLYGMLK
Sbjct: 61  VLVGLHDSDSDADAEYICRKVLNMRLFPNESTARAWDLNVMQKNYEVLLVSQFTLYGMLK 120

Query: 121 GNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMMKKVNLVNDGPVTMQID 180
           GNKPDFHVAMPP RAKPFYASVVERFGKSYNPD IKDGVFGAMM KVNLVNDGPVTMQID
Sbjct: 121 GNKPDFHVAMPPLRAKPFYASVVERFGKSYNPDLIKDGVFGAMM-KVNLVNDGPVTMQID 180

Query: 181 SQPSKNTVEVSEDS 195
           SQPSKNTVE  EDS
Sbjct: 181 SQPSKNTVEPPEDS 193

[Close]

BLAST of Lsi02G007860 vs. NCBI nr
Match: XP_022140203.1 (D-tyrosyl-tRNA(Tyr) deacylase [Momordica charantia])

HSP 1 Score: 352.8 bits (904), Expect = 1.9e-93
Identity = 177/194 (91.24%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MNSVANLPLFAASVGTKRTTLFRNNKLQPIRSMRAIVQRVASASVEVDGRTVSEIGPGLL 60
           MNSVANLPL+AASVGTKRT L  N K QP RSMRA+VQRV SASV+VDGRTVSEIGPGLL
Sbjct: 1   MNSVANLPLYAASVGTKRTRLLSNKKTQPTRSMRAVVQRVVSASVQVDGRTVSEIGPGLL 60

Query: 61  VLVGLHDSDSDTDAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLGNQFTLYGMLK 120
           VLVGLH+SDSD DAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLL +QFTLYGMLK
Sbjct: 61  VLVGLHESDSDADAEYICRKVLNMRLFPNESTGKAWDLNVMQKNYEVLLVSQFTLYGMLK 120

Query: 121 GNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMMKKVNLVNDGPVTMQID 180
           GNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM KVNLVNDGPVTMQID
Sbjct: 121 GNKPDFHVAMPPQRAKPFYASVVERFGKSYNPDAIKDGVFGAMM-KVNLVNDGPVTMQID 180

Query: 181 SQPSKNTVEVSEDS 195
           SQPSKNTVE  EDS
Sbjct: 181 SQPSKNTVEAQEDS 193

[Close]

BLAST of Lsi02G007860 vs. TAIR 10
Match: AT4G18460.1 (D-Tyr-tRNA(Tyr) deacylase family protein )

HSP 1 Score: 251.5 bits (641), Expect = 5.4e-67
Identity = 118/152 (77.63%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 33  MRAIVQRVASASVEVDGRTVSEIGPGLLVLVGLHDSDSDTDAEYICRKVLNMRLFPNEST 92
           MRA++QRV+S+SV VDGR VSEIGPGLLVL+G+H+SD+++DA+YICRKVLNMRLF NE+T
Sbjct: 1   MRAVIQRVSSSSVTVDGRIVSEIGPGLLVLIGIHESDTESDADYICRKVLNMRLFSNETT 60

Query: 93  GKAWDLNVMQKNYEVLLGNQFTLYGMLKGNKPDFHVAMPPQRAKPFYASVVERFGKSYNP 152
           GK WD NVMQ+NY VLL +QFTLYG LKGNKPDFHVAMPP +AKPFYAS+VE+F K+YNP
Sbjct: 61  GKGWDQNVMQRNYGVLLVSQFTLYGFLKGNKPDFHVAMPPDKAKPFYASLVEKFQKAYNP 120

Query: 153 DAIKDGVFGAMMKKVNLVNDGPVTMQIDSQPS 185
           DA+KDGVFGAMM +VNLVNDGPVTMQ+DS  S
Sbjct: 121 DAVKDGVFGAMM-QVNLVNDGPVTMQLDSPQS 151

The following BLAST results are available for this feature:

BLAST of Lsi02G007860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54EY1	6.5e-41	54.00	D-aminoacyl-tRNA deacylase OS=Dictyostelium discoideum OX=44689 GN=dtd PE=3 SV=1	[more]
Q9DD18	2.3e-38	53.02	D-aminoacyl-tRNA deacylase 1 OS=Mus musculus OX=10090 GN=Dtd1 PE=1 SV=2	[more]
Q8TEA8	1.1e-37	51.68	D-aminoacyl-tRNA deacylase 1 OS=Homo sapiens OX=9606 GN=DTD1 PE=1 SV=2	[more]
Q2T9V8	2.0e-37	51.01	D-aminoacyl-tRNA deacylase 1 OS=Bos taurus OX=9913 GN=DTD1 PE=2 SV=1	[more]
F1QGC8	9.7e-37	50.00	D-aminoacyl-tRNA deacylase 1 OS=Danio rerio OX=7955 GN=dtd1 PE=1 SV=1	[more]

BLAST of Lsi02G007860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS01	5.1e-97	94.39	D-aminoacyl-tRNA deacylase OS=Cucumis sativus OX=3659 GN=Csa_1G076620 PE=3 SV=1	[more]
A0A5A7UU37	2.1e-95	92.89	D-aminoacyl-tRNA deacylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3B6T2	2.1e-95	92.89	D-aminoacyl-tRNA deacylase OS=Cucumis melo OX=3656 GN=LOC103486664 PE=3 SV=1	[more]
A0A6J1CHG7	9.0e-94	91.24	D-aminoacyl-tRNA deacylase OS=Momordica charantia OX=3673 GN=LOC111010928 PE=3 S...	[more]
A0A6J1EH34	1.9e-91	90.26	D-aminoacyl-tRNA deacylase OS=Cucurbita moschata OX=3662 GN=LOC111434135 PE=3 SV...	[more]

BLAST of Lsi02G007860 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64710.1	1.0e-96	94.39	hypothetical protein Csa_014221 [Cucumis sativus]	[more]
XP_011653368.2	1.0e-96	94.39	D-aminoacyl-tRNA deacylase [Cucumis sativus]	[more]
XP_008442903.1	4.4e-95	92.89	PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase [Cucumis melo] >KAA0057021.1 D-tyrosyl-...	[more]
XP_038894530.1	9.8e-95	93.30	D-aminoacyl-tRNA deacylase [Benincasa hispida]	[more]
XP_022140203.1	1.9e-93	91.24	D-tyrosyl-tRNA(Tyr) deacylase [Momordica charantia]	[more]

BLAST of Lsi02G007860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18460.1	5.4e-67	77.63	D-Tyr-tRNA(Tyr) deacylase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003732	D-aminoacyl-tRNA deacylase DTD	PFAM	PF02580	Tyr_Deacylase	coord: 34..180 e-value: 1.2E-44 score: 152.3
IPR003732	D-aminoacyl-tRNA deacylase DTD	TIGRFAM	TIGR00256	TIGR00256	coord: 33..181 e-value: 5.5E-39 score: 131.9
IPR003732	D-aminoacyl-tRNA deacylase DTD	PANTHER	PTHR10472	D-TYROSYL-TRNA TYR DEACYLASE	coord: 33..187
IPR003732	D-aminoacyl-tRNA deacylase DTD	CDD	cd00563	Dtyr_deacylase	coord: 33..181 e-value: 1.1731E-70 score: 209.437
IPR023509	D-aminoacyl-tRNA deacylase-like superfamily	GENE3D	3.50.80.10		coord: 33..187 e-value: 2.9E-58 score: 198.3
IPR023509	D-aminoacyl-tRNA deacylase-like superfamily	SUPERFAMILY	69500	DTD-like	coord: 32..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..194
None	No IPR available	PANTHER	PTHR10472:SF5	D-AMINOACYL-TRNA DEACYLASE 1	coord: 33..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G007860.1	Lsi02G007860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0106074	aminoacyl-tRNA metabolism involved in translational fidelity
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0051500	D-tyrosyl-tRNA(Tyr) deacylase activity
molecular_function	GO:0000049	tRNA binding
molecular_function	GO:0002161	aminoacyl-tRNA editing activity
molecular_function	GO:0051499	D-aminoacyl-tRNA deacylase activity