Lsi02G007480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G007480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA ligase 1
Location	chr02: 6882271 .. 6884739 (+)
RNA-Seq Expression	Lsi02G007480
Synteny	Lsi02G007480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGATTCAGCGGGGTATTTAGAAGTCTTGGCAATTCAAAATTCCTAACGCTTCGAAACAGAACGGTTCTCCATCTTCAATTCTAAAGTTTTCTTCAACCTCCATCCAGATGGGGAACGTGAAAATTCCTACTACTAAAACAAGAACCAGGAAGCGAGTCTCCGACACCGATCTCAAGAGCTCCGATCAAAGGAAGCGGACCAACGATGATATCGACCTCGATCTTGACCTTTCCGAGTACGTACTATTTTCCATTTCCGTTTCACTTTCTGGTGATGTTTTGGAGAATCTTGACAATGATATTTACGGTATGCAGCGATCTCAAAGGAATAGTCTCGGCGCTGAATCAGATCAAAGAGAGAGCTCACAAGGACGACCAGAAGAAGAATGAAGAGACGATCTCAAGGTAATTTTAGTGGTTTTGCTCGATCGGAACCTATTGATGATTTGTTACTTGACTGGAGCTGCTGAAATTGTGTGTTCTTGTGTGTTTATTTCCGATTCTCGAATTTCTGTATACGGCTGCTCGTTTGCACCTTCATTTTCCTTCTTCTAGATTCGAACTGACCTCACTCGTAGGTTGATTTTGTGATTTGCTTGAAATGATTCGTTAGAAACTTGAAATGATAGCCTGTTCAAACTTAGCTTCCTGGATCAGACTTGCTTCGCCTCACCGTTTCTGGAGAACATTTGACCGTTTTCTAACTTCAATCCATGCCGCTTTTCTAATGACAGAGGAACTCATTCATTTTCTGAGCTAATTCTCGAATTTCTGTATACGGCTGCTCGTTTGCACCTTCATTTTCCTTCTTCTAGATTTGAACTGACCTCACTCGTAGTTTGATTTTGTGATTTGCTTGAAATGATTCGTTAGAAACTTGAAATGATAGCCTGTTCAAACTTAGCTTCCTGGATCGGACTTGCTTCGCCTCACCGTTCCTGTCGAATATTTGTCCGTTTTCCAACTTCAATCCATGCCGCTTTTTTAATGACAGAGGAGTTCCTTCATTTTCTGAGCTAATACTCTTCATCTTGTCCTACACTAGAACGATGTTTTGAATGTTAATTTCATATTATTGACAGTGTAGCGACTGAGATGAGCGCAATGATTGAGGAAGTGAAATCTAAACTTGAGAAGGACAGGTAGATTTCAGAACTATCCTGAACGAGTTCAGGATGTTGTTCGCTTCAATTTTTGGTTGAATTAGTTATATACGAATGAATGCAATTTATTTCTTCCAACCAATTTCAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGGTTGGTGGAGAACAACGACTTGAAATAGAGGCCATTCAAGCGCAAATTTGAAGTCCTTATATATTATTTCTAGAATCATTGTATTAAGGCATTTTCCAGATGTTGTGTTAAAATCAATATGGCTTCTTTATAGTGTGAAAACTGTTTGAAGGACGAAACTGCTAAGTTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTCCAGGCCATAAAAGGTAACATCCACTTCGAGTGAGAAATATTCATTTTCTACTCCTGTTTAGACTAATTTTCATTTTATTTATTAAATCTCAACTGGCGCGAGACCTTTATAATGCATGAGCAAATCCCTACCATGCTTTATAATTTTCCATCATCGCATTCATGAGGTTAGGCTTCATTCCATAGCATAGAAAGAATCCTCGATCTTTGAGAGACATCATAGTGCTGAGTGGCAAATGAAGCATTGGCACTGGAGTTAGGTCCTCAACTACAATATGTGTGTTCCATCAATACTGATTGCTTTTTGGATTCCCTTTTACAAATAATTTGGATGTGTATGATATATTGGTATTGAAGAACCTTTCACTTTTTGGTTGAAAATAACAAGTTTATTTCATTTTAACTACTACCAATCTGGCAATATTTTGGTATATTCACTATGGGCGTATGATCTTAAACCATTGGAGCTCTAAGAAAATCCACCTTTTTCTTCTTCAAGATGGTTCTTAAATATCTTCTCCTAATTTAAGATGCTGTTTGGCTTTGGCAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTAAGTAAGCATGAACTTATGCATCAATCAGCACAAAACGTTTTATTATTATTATTACTTATTTCCCTTTGTATTTGTAACAGGAAAGAGAGAAAGGAGCCTGATATCTGAACAAGAAAAAGCTTGTGCTGAAAAGATTGCTCAATTAGAGGAGTCTTTGAAAAGGAAAAAACAGGTATAGTACGACCTGTAATTCATAAAATTAGCACTAACGCCTTCCCCCTTCTATGCTAATGGGCTCTTTAATTATACACATGGATATGGAACACAGGATGATAAGACTTTCAGTCTTTTGCGGAAGACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGA

mRNA sequence

CAAGATTCAGCGGGGTATTTAGAAGTCTTGGCAATTCAAAATTCCTAACGCTTCGAAACAGAACGGTTCTCCATCTTCAATTCTAAAGTTTTCTTCAACCTCCATCCAGATGGGGAACGTGAAAATTCCTACTACTAAAACAAGAACCAGGAAGCGAGTCTCCGACACCGATCTCAAGAGCTCCGATCAAAGGAAGCGGACCAACGATGATATCGACCTCGATCTTGACCTTTCCGACGATCTCAAAGGAATAGTCTCGGCGCTGAATCAGATCAAAGAGAGAGCTCACAAGGACGACCAGAAGAAGAATGAAGAGACGATCTCAAGTGTAGCGACTGAGATGAGCGCAATGATTGAGGAAGTGAAATCTAAACTTGAGAAGGACAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGTGTGAAAACTGTTTGAAGGACGAAACTGCTAAGTTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTCCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTAAGAAAGAGAGAAAGGAGCCTGATATCTGAACAAGAAAAAGCTTGTGCTGAAAAGATTGCTCAATTAGAGGAGTCTTTGAAAAGGAAAAAACAGGATGATAAGACTTTCAGTCTTTTGCGGAAGACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGA

Coding sequence (CDS)

ATGGGGAACGTGAAAATTCCTACTACTAAAACAAGAACCAGGAAGCGAGTCTCCGACACCGATCTCAAGAGCTCCGATCAAAGGAAGCGGACCAACGATGATATCGACCTCGATCTTGACCTTTCCGACGATCTCAAAGGAATAGTCTCGGCGCTGAATCAGATCAAAGAGAGAGCTCACAAGGACGACCAGAAGAAGAATGAAGAGACGATCTCAAGTGTAGCGACTGAGATGAGCGCAATGATTGAGGAAGTGAAATCTAAACTTGAGAAGGACAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGTGTGAAAACTGTTTGAAGGACGAAACTGCTAAGTTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTCCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTAAGAAAGAGAGAAAGGAGCCTGATATCTGAACAAGAAAAAGCTTGTGCTGAAAAGATTGCTCAATTAGAGGAGTCTTTGAAAAGGAAAAAACAGGATGATAAGACTTTCAGTCTTTTGCGGAAGACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGA

Protein sequence

MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD

Homology

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BLAST of Lsi02G007480 vs. ExPASy TrEMBL
Match: A0A0A0LRW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.3e-101
Identity = 207/216 (95.83%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 1   MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+KIPT KTR+RKRVSDTDL SSDQRK+TNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSVATEM  MIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 217
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Lsi02G007480 vs. ExPASy TrEMBL
Match: A0A5D3DS94 (DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00780 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 9.3e-100
Identity = 205/216 (94.91%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           M N+KIPT KTR+RKRVSDTDL SS+QR RTNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSVATEM  MIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 217
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Lsi02G007480 vs. ExPASy TrEMBL
Match: A0A1S3B5C2 (DNA ligase 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486349 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 9.3e-100
Identity = 205/216 (94.91%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           M N+KIPT KTR+RKRVSDTDL SS+QR RTNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSVATEM  MIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 217
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Lsi02G007480 vs. ExPASy TrEMBL
Match: A0A6J1KJH3 (DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.3e-97
Identity = 199/216 (92.13%), Postives = 207/216 (95.83%), Query Frame = 0


Query: 1   MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+KIP  KTRTRKRVSD DL SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDQKKNEETISSV+TE+  MIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 217
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDFP DD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

[Close]

BLAST of Lsi02G007480 vs. ExPASy TrEMBL
Match: A0A6J1EL64 (DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 7.4e-97
Identity = 199/216 (92.13%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+KIP  KTRTRKRVSD+DL SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDSDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDQKKNEETISSV+TE+  MIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 217
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDF ADD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

[Close]

BLAST of Lsi02G007480 vs. NCBI nr
Match: XP_004146600.1 (DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X1 [Cucumis sativus] >KGN64675.1 hypothetical protein Csa_013771 [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 2.7e-101
Identity = 207/216 (95.83%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 1   MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+KIPT KTR+RKRVSDTDL SSDQRK+TNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSVATEM  MIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 217
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Lsi02G007480 vs. NCBI nr
Match: XP_038895277.1 (DNA ligase 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 375.9 bits (964), Expect = 2.3e-100
Identity = 205/216 (94.91%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+K PTTK R RKRVSDTDL SSDQRKRTNDD+DLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNMKTPTTKARVRKRVSDTDLTSSDQRKRTNDDLDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDQKKNEETISSVATEM  MIE+VKSKLEKDRQNFAKALSKSSKECENCLKDETAKF+A
Sbjct: 61  KDDQKKNEETISSVATEMRTMIEQVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFRA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLF KYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFVKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 217
           ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 216

[Close]

BLAST of Lsi02G007480 vs. NCBI nr
Match: XP_008442500.1 (PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo] >KAA0056986.1 DNA ligase 1 isoform X1 [Cucumis melo var. makuwa] >TYK26414.1 DNA ligase 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 372.9 bits (956), Expect = 1.9e-99
Identity = 205/216 (94.91%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           M N+KIPT KTR+RKRVSDTDL SS+QR RTNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSVATEM  MIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 217
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Lsi02G007480 vs. NCBI nr
Match: XP_023001751.1 (DNA ligase 1 [Cucurbita maxima])

HSP 1 Score: 364.0 bits (933), Expect = 8.9e-97
Identity = 199/216 (92.13%), Postives = 207/216 (95.83%), Query Frame = 0


Query: 1   MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+KIP  KTRTRKRVSD DL SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDQKKNEETISSV+TE+  MIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 217
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDFP DD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

[Close]

BLAST of Lsi02G007480 vs. NCBI nr
Match: XP_022927498.1 (DNA ligase 1 [Cucurbita moschata] >KAG6583999.1 hypothetical protein SDJN03_19931, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019621.1 hypothetical protein SDJN02_18584, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 363.2 bits (931), Expect = 1.5e-96
Identity = 199/216 (92.13%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+KIP  KTRTRKRVSD+DL SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDSDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDQKKNEETISSV+TE+  MIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 217
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDF ADD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

[Close]

BLAST of Lsi02G007480 vs. TAIR 10
Match: AT2G33793.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 235.0 bits (598), Expect = 5.8e-62
Identity = 133/217 (61.29%), Postives = 173/217 (79.72%), Query Frame = 0


Query: 1   MGNVKIPTTKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           M + +  T +TR     S   LK    + +  D  +LD+D+S D KGI+SAL Q +E+AH
Sbjct: 1   MSSTRRGTKRTRPEPPQS---LKKPTPKAKLPD--ELDVDVSSDFKGIMSALQQFREKAH 60

Query: 61  KDDQKKNEETISSVATEMSAMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           +D +KK EE+ISSV+TE+ + I+E+KSKLEK+RQNF+KALSKSSKECEN LKDE AKF+ 
Sbjct: 61  EDGRKKKEESISSVSTEVKSKIDELKSKLEKERQNFSKALSKSSKECENILKDEAAKFEE 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           L++KF K+KA HLQ +KDTISKFEE+KERL+ +YEQLRK+E+++I+EQEK C EK+AQLE
Sbjct: 121 LHKKFVKDKADHLQGLKDTISKFEEDKERLYMRYEQLRKKEKTMITEQEKFCTEKLAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLET-GSDEDFPADD 217
           ESLK+KK+ DKTFS+LRKTLGSFLE   SDE+FP D+
Sbjct: 181 ESLKKKKRGDKTFSILRKTLGSFLENEASDEEFPPDE 212

The following BLAST results are available for this feature:

BLAST of Lsi02G007480 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G007480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRW7	1.3e-101	95.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1	[more]
A0A5D3DS94	9.3e-100	94.91	DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B5C2	9.3e-100	94.91	DNA ligase 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486349 PE=4 SV=1	[more]
A0A6J1KJH3	4.3e-97	92.13	DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1	[more]
A0A6J1EL64	7.4e-97	92.13	DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1	[more]

BLAST of Lsi02G007480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146600.1	2.7e-101	95.83	DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X...	[more]
XP_038895277.1	2.3e-100	94.91	DNA ligase 1 isoform X1 [Benincasa hispida]	[more]
XP_008442500.1	1.9e-99	94.91	PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo] >KAA0056986.1 DNA ligase 1 iso...	[more]
XP_023001751.1	8.9e-97	92.13	DNA ligase 1 [Cucurbita maxima]	[more]
XP_022927498.1	1.5e-96	92.13	DNA ligase 1 [Cucurbita moschata] >KAG6583999.1 hypothetical protein SDJN03_1993...	[more]

BLAST of Lsi02G007480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33793.1	5.8e-62	61.29	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 169..189
None	No IPR available	COILS	Coil	Coil	coord: 133..167
None	No IPR available	COILS	Coil	Coil	coord: 75..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..34
None	No IPR available	PANTHER	PTHR35295	DNA LIGASE-LIKE PROTEIN	coord: 9..216
None	No IPR available	PANTHER	PTHR35295:SF1	DNA LIGASE-LIKE PROTEIN	coord: 9..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G007480.1	Lsi02G007480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0099086	synaptonemal structure
molecular_function	GO:0016874	ligase activity