Lsi02G006470 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G006470
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAminoacyl-tRNA ligase
Locationchr02: 5790354 .. 5791400 (-)
RNA-Seq ExpressionLsi02G006470
SyntenyLsi02G006470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAAGAAACAAAATGGAAAACCAAGTAGAAGCATTGGAAACCAAGTTGAAGAAGGTTACGGATGAAGTTCAGAACATCTCAACAATGGACAACAACGTCACCGCTCTGTTACAACAAATAGCCCAGCTTCTGACGGTACAACAACAACAACAACGCCTACCTGAGTACGCAGCCCACCGGATACTGGACCTGGAGCTACCAATGTTCGATGGAACCGATTCACTCATGTGGATCCTGAAAATGGAACGCTACTTTGAAGTTCACCACATGGACGACATTGCCAAGATGATGGAGATCGTCCTTCTCTGTATGTCTGGCCAAGCCCTAGCGTGGTTCCGATGCTTTCGAAACTGGGGAAAACCTCCGGAATCGTGGGGTGAGTTTCGGGGTGCTTTGTATATGCGATTTGGAGACGATCACAGCGTGTGTTTCAGTTTCATTGCCTTGCAGCAAGAGGGGAGTGTTAGGGACTATTGTAGCAAGTTCGAGTCACTAGGGGCGCTCCTTCCGGAACTCCCTGAAGATCTTGTTGAAGCAAAATTTATGACCGGCTTGAAGACGGAGATTCGGCTGGAGGTTCGGACGTTACAACCAAAAGGTATTCTGGACACGATGTATAGGGCGAGGTTAGTGGAAAATAAGATCAACGTTGCTCTGAACTCAGCCAAGCGTAAAAGCACGGTCAAGGAGAGGTCTGTGGTCGTTAAGATAGTCGATTGGACTGATTATAACTTAATCTCTAAAAACTTAGCTACGGACTTGAAGCTTCCGTTGGACATGTACGGCGACTACAATGTGGTTTTGGGTTGCGGGAAGAAGGTTAAAGGAGACGGAATTTGTCGTGGAGTGTTGCTGCAAATCGGGAATGACACCTATGTGGAGGACTTCTTTCCCCTTCAAATGGGAGAGGATGATGAGGTGATACTGGGAAATCTGTGGCTGGTGGCCTTAGGCAAGATGGAAGTTGATTGGAAACATCTCCCGATGAAGCTGAAGGTGGGGAAGGAGATTGTAAATTTACGAAGAGACCCATCCCTCTGA

mRNA sequence

ATGGGAAGAAGAAACAAAATGGAAAACCAAGTAGAAGCATTGGAAACCAAGTTGAAGAAGGTTACGGATGAAGTTCAGAACATCTCAACAATGGACAACAACGTCACCGCTCTGTTACAACAAATAGCCCAGCTTCTGACGGTACAACAACAACAACAACGCCTACCTGAGTACGCAGCCCACCGGATACTGGACCTGGAGCTACCAATGTTCGATGGAACCGATTCACTCATGTGGATCCTGAAAATGGAACGCTACTTTGAAGTTCACCACATGGACGACATTGCCAAGATGATGGAGATCGTCCTTCTCTGTATGTCTGGCCAAGCCCTAGCGTGGTTCCGATGCTTTCGAAACTGGGGAAAACCTCCGGAATCGTGGGGTGAGTTTCGGGGTGCTTTGTATATGCGATTTGGAGACGATCACAGCGTGTGTTTCAGTTTCATTGCCTTGCAGCAAGAGGGGAGTGTTAGGGACTATTGTAGCAAGTTCGAGTCACTAGGGGCGCTCCTTCCGGAACTCCCTGAAGATCTTGTTGAAGCAAAATTTATGACCGGCTTGAAGACGGAGATTCGGCTGGAGGTTCGGACGTTACAACCAAAAGGTATTCTGGACACGATGTATAGGGCGAGGTTAGTGGAAAATAAGATCAACGTTGCTCTGAACTCAGCCAAGCGTAAAAGCACGGTCAAGGAGAGGTCTGTGGTCGTTAAGATAGTCGATTGGACTGATTATAACTTAATCTCTAAAAACTTAGCTACGGACTTGAAGCTTCCGTTGGACATGTACGGCGACTACAATGTGGTTTTGGGTTGCGGGAAGAAGGTTAAAGGAGACGGAATTTGTCGTGGAGTGTTGCTGCAAATCGGGAATGACACCTATGTGGAGGACTTCTTTCCCCTTCAAATGGGAGAGGATGATGAGGTGATACTGGGAAATCTGTGGCTGGTGGCCTTAGGCAAGATGGAAGTTGATTGGAAACATCTCCCGATGAAGCTGAAGGTGGGGAAGGAGATTGTAAATTTACGAAGAGACCCATCCCTCTGA

Coding sequence (CDS)

ATGGGAAGAAGAAACAAAATGGAAAACCAAGTAGAAGCATTGGAAACCAAGTTGAAGAAGGTTACGGATGAAGTTCAGAACATCTCAACAATGGACAACAACGTCACCGCTCTGTTACAACAAATAGCCCAGCTTCTGACGGTACAACAACAACAACAACGCCTACCTGAGTACGCAGCCCACCGGATACTGGACCTGGAGCTACCAATGTTCGATGGAACCGATTCACTCATGTGGATCCTGAAAATGGAACGCTACTTTGAAGTTCACCACATGGACGACATTGCCAAGATGATGGAGATCGTCCTTCTCTGTATGTCTGGCCAAGCCCTAGCGTGGTTCCGATGCTTTCGAAACTGGGGAAAACCTCCGGAATCGTGGGGTGAGTTTCGGGGTGCTTTGTATATGCGATTTGGAGACGATCACAGCGTGTGTTTCAGTTTCATTGCCTTGCAGCAAGAGGGGAGTGTTAGGGACTATTGTAGCAAGTTCGAGTCACTAGGGGCGCTCCTTCCGGAACTCCCTGAAGATCTTGTTGAAGCAAAATTTATGACCGGCTTGAAGACGGAGATTCGGCTGGAGGTTCGGACGTTACAACCAAAAGGTATTCTGGACACGATGTATAGGGCGAGGTTAGTGGAAAATAAGATCAACGTTGCTCTGAACTCAGCCAAGCGTAAAAGCACGGTCAAGGAGAGGTCTGTGGTCGTTAAGATAGTCGATTGGACTGATTATAACTTAATCTCTAAAAACTTAGCTACGGACTTGAAGCTTCCGTTGGACATGTACGGCGACTACAATGTGGTTTTGGGTTGCGGGAAGAAGGTTAAAGGAGACGGAATTTGTCGTGGAGTGTTGCTGCAAATCGGGAATGACACCTATGTGGAGGACTTCTTTCCCCTTCAAATGGGAGAGGATGATGAGGTGATACTGGGAAATCTGTGGCTGGTGGCCTTAGGCAAGATGGAAGTTGATTGGAAACATCTCCCGATGAAGCTGAAGGTGGGGAAGGAGATTGTAAATTTACGAAGAGACCCATCCCTCTGA

Protein sequence

MGRRNKMENQVEALETKLKKVTDEVQNISTMDNNVTALLQQIAQLLTVQQQQQRLPEYAAHRILDLELPMFDGTDSLMWILKMERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRCFRNWGKPPESWGEFRGALYMRFGDDHSVCFSFIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKFMTGLKTEIRLEVRTLQPKGILDTMYRARLVENKINVALNSAKRKSTVKERSVVVKIVDWTDYNLISKNLATDLKLPLDMYGDYNVVLGCGKKVKGDGICRGVLLQIGNDTYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKHLPMKLKVGKEIVNLRRDPSL
Homology
BLAST of Lsi02G006470 vs. ExPASy TrEMBL
Match: A0A5D3BJD9 (Aminoacyl-tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006110 PE=4 SV=1)

HSP 1 Score: 529.6 bits (1363), Expect = 9.6e-147
Identity = 268/345 (77.68%), Postives = 297/345 (86.09%), Query Frame = 0

Query: 7   MENQVEALETKLKKVTD-EVQNI-STMDNNVTALLQQIAQLLTVQQQQQRLPEYA-AHRI 66
           MEN VEAL+ KLKKV D EV NI +T DNN+T L+ Q+A LL     QQ LP+YA  HR+
Sbjct: 1   MENPVEALDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLL--NGHQQCLPQYAPTHRM 60

Query: 67  LDLELPMFDGTDSLMWILKMERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRCFRNWGKP 126
            +LELPMFDGTD+LMWILKMERYFEVHH+DDIA+MM+ +LLCMSGQALAWFRCF+NWGKP
Sbjct: 61  PNLELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKP 120

Query: 127 PESWGEFRGALYMRFGDDHSVCFSFIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKF 186
           PESW EFR +LYMRFGD  +VC  F+ L+QEGSV +YCSKFE+LGALLPEL   ++EAKF
Sbjct: 121 PESWDEFRDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKF 180

Query: 187 MTGLKTEIRLEVRTLQPKGILDTMYRARLVENKINVALNSAKRKSTVKERSVVVKIVDWT 246
           M GLKTEIR +VR L PK ILD M+RARL E K NVALNS KRK TVKERSV+VK+V WT
Sbjct: 181 MNGLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALNSTKRKGTVKERSVIVKVVSWT 240

Query: 247 DYNLISKNLATDLKLPLDMYGDYNVVLGCGKKVKGDGICRGVLLQIGNDTYVEDFFPLQM 306
           DYNLISKNLATDLKL LDMYGDY+VVLG GKKVKGDGICRGVLLQIGNDTYVEDFFPLQM
Sbjct: 241 DYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVEDFFPLQM 300

Query: 307 GEDDEVILGNLWLVALGKMEVDWKHLPMKLKVGKEIVNLRRDPSL 349
           GEDDEVILGNLWLVALGKMEVDWK+LPMKLKVGKE V LR+DP L
Sbjct: 301 GEDDEVILGNLWLVALGKMEVDWKNLPMKLKVGKETVTLRKDPFL 343

BLAST of Lsi02G006470 vs. ExPASy TrEMBL
Match: A0A1S4DXQ7 (uncharacterized protein LOC107991016 OS=Cucumis melo OX=3656 GN=LOC107991016 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 7.9e-141
Identity = 258/331 (77.95%), Postives = 286/331 (86.40%), Query Frame = 0

Query: 7   MENQVEALETKLKKVTD-EVQNI-STMDNNVTALLQQIAQLLTVQQQQQRLPEYA-AHRI 66
           MEN VEAL+ KLKKV D EV NI +T DNN+T L+ Q+A LL     QQ LP+YA  HR+
Sbjct: 1   MENPVEALDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLL--NGHQQCLPQYAPTHRM 60

Query: 67  LDLELPMFDGTDSLMWILKMERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRCFRNWGKP 126
            +LELPMFDGTD+LMWILKMERYFEVHH+DDIA+MM+ +LLCMSGQALAWFRCF+NWGKP
Sbjct: 61  PNLELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKP 120

Query: 127 PESWGEFRGALYMRFGDDHSVCFSFIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKF 186
           PESW EFR +LYMRFGD  +VC  F+ L+QEGSV +YCSKFE+LGALLPEL   ++EAKF
Sbjct: 121 PESWDEFRDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKF 180

Query: 187 MTGLKTEIRLEVRTLQPKGILDTMYRARLVENKINVALNSAKRKSTVKERSVVVKIVDWT 246
           M GLKTEIR +VR L PK ILD M+RARL E K NVALNS KRK TVKERSV+VK+V WT
Sbjct: 181 MNGLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALNSTKRKGTVKERSVIVKVVSWT 240

Query: 247 DYNLISKNLATDLKLPLDMYGDYNVVLGCGKKVKGDGICRGVLLQIGNDTYVEDFFPLQM 306
           DYNLISKNLATDLKL LDMYGDY+VVLG GKKVKGDGICRGVLLQIGNDTYVEDFFPLQM
Sbjct: 241 DYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVEDFFPLQM 300

Query: 307 GEDDEVILGNLWLVALGKMEVDWKHLPMKLK 335
           GEDDEVILGNLWLVALGKMEVDWK+LPMKLK
Sbjct: 301 GEDDEVILGNLWLVALGKMEVDWKNLPMKLK 329

BLAST of Lsi02G006470 vs. ExPASy TrEMBL
Match: A0A0A0LUB3 (Retrotrans_gag domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064860 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.0e-83
Identity = 169/233 (72.53%), Postives = 186/233 (79.83%), Query Frame = 0

Query: 7   MENQVEALETKLKKVTD-EVQNISTMDNNVTALLQQIAQLLTVQQQQQRLPEYA-AHRIL 66
           MEN VEALE KLKKV D EV NI   DNN T LL Q+A LL     QQRL +YA  HR+ 
Sbjct: 1   MENPVEALEAKLKKVEDEEVHNIPITDNNHTTLLHQMALLLNA--HQQRLLQYAPTHRMP 60

Query: 67  DLELPMFDGTDSLMWILKMERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRCFRNWGKPP 126
           +LELPMFDGTD+LMWILKMERYFEVHH+DDIA+MME +LLCMSGQALAWFRCF+NWG PP
Sbjct: 61  NLELPMFDGTDTLMWILKMERYFEVHHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPP 120

Query: 127 ESWGEFRGALYMRFGDDHSVCFSFIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKFM 186
           ESWGEFRG+LY RFGD H V   FI LQQEGSV +YCSKFESLGALLPEL   +VEAKFM
Sbjct: 121 ESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFM 180

Query: 187 TGLKTEIRLEVRTLQPKGILDTMYRARLVENKINVALNSAKRKSTVKERSVVV 238
            GLKTEIR EVR L  +GILD M+RARL E K NVA NS KRK TVKE S+++
Sbjct: 181 NGLKTEIRGEVRMLDTEGILDIMHRARLAEIKNNVAFNSTKRKGTVKESSLIM 231

BLAST of Lsi02G006470 vs. ExPASy TrEMBL
Match: A0A5D3C860 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00050 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.8e-37
Identity = 107/336 (31.85%), Postives = 163/336 (48.51%), Query Frame = 0

Query: 66  LELPMFDGTDSLMWILKMERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRCFRNWGKPPE 125
           +E+P+F G D   W+ + ERYF++H + D  KM+ +  +   G AL W+R      K   
Sbjct: 127 VEMPVFAGEDPDSWLFRAERYFQIHKLSDSEKML-VSTISFDGPALNWYRSQEEREK-FT 186

Query: 126 SWGEFRGALYMRF--GDDHSVCFSFIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKF 185
           SW   +  L +RF    D  V   F+ ++QE +V DY + F+ L A L ++P+ +V+  F
Sbjct: 187 SWANLKERLLVRFRSSRDEKVLERFLRVKQESTVDDYRNLFDKLVAPLSDVPDPVVKDTF 246

Query: 186 MTGLKTEIRLEVRTLQPKGILDTMYRARLVENK--------------------------- 245
           M GL   IR EVR  +PKG+ + M  A+LVEN+                           
Sbjct: 247 MNGLFPWIRAEVRICRPKGLAEMMEFAQLVENREIERNEVNLNNFAGGKYSQQNTVNNRT 306

Query: 246 ------------------------INVALNSAKRKSTVKERSVVVKIVDWTDYNLISKNL 305
                                    N  + + K K  ++ER V++ I     +N IS+ L
Sbjct: 307 PANTNSDSKTNTNFPMRTITLRSSNNAEICTMKVKGKIQEREVIILIDYGATHNFISEKL 366

Query: 306 ATDLKLPLDMYGDYNVVLGCGKKVKGDGICRGVLLQIGNDTYVEDFFPLQMGEDDEVILG 349
              L+LP+   G Y V+LG G  V+G GIC  V +Q+ N    E+F PL++G  D V+LG
Sbjct: 367 VESLQLPVKETGHYGVILGSGTVVQGKGICENVEIQLSNWKVKEEFLPLELGGVD-VVLG 426

BLAST of Lsi02G006470 vs. ExPASy TrEMBL
Match: A0A5A7T6B1 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G002030 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.1e-37
Identity = 107/336 (31.85%), Postives = 162/336 (48.21%), Query Frame = 0

Query: 66  LELPMFDGTDSLMWILKMERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRCFRNWGKPPE 125
           +E+P+F G D   W+ + ERYF++H + D  KM+ +  +   G AL W+R      K   
Sbjct: 127 VEMPVFAGEDPDSWLFRAERYFQIHKLSDSEKML-VSTISFDGPALNWYRSQEEREK-FT 186

Query: 126 SWGEFRGALYMRF--GDDHSVCFSFIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKF 185
           SW   +  L +RF    D  V   F+ ++QE +V DY + F+ L A L ++P+ +V+  F
Sbjct: 187 SWANLKERLLVRFRSSRDEKVLERFLRVKQESTVDDYRNLFDKLVAPLSDVPDPVVKDTF 246

Query: 186 MTGLKTEIRLEVRTLQPKGILDTMYRARLVENK--------------------------- 245
           M GL   IR EVR  +PKG+ + M  A+LVEN+                           
Sbjct: 247 MNGLFPWIRAEVRICRPKGLAEMMEFAQLVENREIERNEVNLNNFAGGKYSQQNTVNNRT 306

Query: 246 ------------------------INVALNSAKRKSTVKERSVVVKIVDWTDYNLISKNL 305
                                    N  + + K K  ++ER V++ I     +N IS+ L
Sbjct: 307 PANTNSDSKTNTNFPMRTITLRSSNNAEICTMKVKGKIQEREVIILIDYGATHNFISEKL 366

Query: 306 ATDLKLPLDMYGDYNVVLGCGKKVKGDGICRGVLLQIGNDTYVEDFFPLQMGEDDEVILG 349
              L+LP+   G Y V+LG G  V+G GIC  V +Q+ N    E+F PL++G  D V+LG
Sbjct: 367 VESLQLPVKETGHYGVILGSGTVVQGKGICENVEIQLSNWKVKEEFLPLELGGVD-VVLG 426

BLAST of Lsi02G006470 vs. NCBI nr
Match: KAA0056890.1 (aminoacyl-tRNA ligase [Cucumis melo var. makuwa] >TYJ99393.1 aminoacyl-tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 529.6 bits (1363), Expect = 2.0e-146
Identity = 268/345 (77.68%), Postives = 297/345 (86.09%), Query Frame = 0

Query: 7   MENQVEALETKLKKVTD-EVQNI-STMDNNVTALLQQIAQLLTVQQQQQRLPEYA-AHRI 66
           MEN VEAL+ KLKKV D EV NI +T DNN+T L+ Q+A LL     QQ LP+YA  HR+
Sbjct: 1   MENPVEALDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLL--NGHQQCLPQYAPTHRM 60

Query: 67  LDLELPMFDGTDSLMWILKMERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRCFRNWGKP 126
            +LELPMFDGTD+LMWILKMERYFEVHH+DDIA+MM+ +LLCMSGQALAWFRCF+NWGKP
Sbjct: 61  PNLELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKP 120

Query: 127 PESWGEFRGALYMRFGDDHSVCFSFIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKF 186
           PESW EFR +LYMRFGD  +VC  F+ L+QEGSV +YCSKFE+LGALLPEL   ++EAKF
Sbjct: 121 PESWDEFRDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKF 180

Query: 187 MTGLKTEIRLEVRTLQPKGILDTMYRARLVENKINVALNSAKRKSTVKERSVVVKIVDWT 246
           M GLKTEIR +VR L PK ILD M+RARL E K NVALNS KRK TVKERSV+VK+V WT
Sbjct: 181 MNGLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALNSTKRKGTVKERSVIVKVVSWT 240

Query: 247 DYNLISKNLATDLKLPLDMYGDYNVVLGCGKKVKGDGICRGVLLQIGNDTYVEDFFPLQM 306
           DYNLISKNLATDLKL LDMYGDY+VVLG GKKVKGDGICRGVLLQIGNDTYVEDFFPLQM
Sbjct: 241 DYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVEDFFPLQM 300

Query: 307 GEDDEVILGNLWLVALGKMEVDWKHLPMKLKVGKEIVNLRRDPSL 349
           GEDDEVILGNLWLVALGKMEVDWK+LPMKLKVGKE V LR+DP L
Sbjct: 301 GEDDEVILGNLWLVALGKMEVDWKNLPMKLKVGKETVTLRKDPFL 343

BLAST of Lsi02G006470 vs. NCBI nr
Match: KAE8652678.1 (hypothetical protein Csa_013756 [Cucumis sativus])

HSP 1 Score: 525.8 bits (1353), Expect = 2.9e-145
Identity = 270/344 (78.49%), Postives = 290/344 (84.30%), Query Frame = 0

Query: 7   MENQVEALETKLKKVTD-EVQNISTMDNNVTALLQQIAQLLTVQQQQQRLPEYA-AHRIL 66
           MEN VEALE KLKKV D EV NI   DNN T LL Q+A LL     QQRL +YA  HR+ 
Sbjct: 1   MENPVEALEAKLKKVEDEEVHNIPITDNNHTTLLHQMALLLNA--HQQRLLQYAPTHRMP 60

Query: 67  DLELPMFDGTDSLMWILKMERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRCFRNWGKPP 126
           +LELPMFDGTD+LMWILKMERYFEVHH+DDIA+MME +LLCMSGQALAWFRCF+NWG PP
Sbjct: 61  NLELPMFDGTDTLMWILKMERYFEVHHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPP 120

Query: 127 ESWGEFRGALYMRFGDDHSVCFSFIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKFM 186
           ESWGEFRG+LY RFGD H V   FI LQQEGSV +YCSKFESLGALLPEL   +VEAKFM
Sbjct: 121 ESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFM 180

Query: 187 TGLKTEIRLEVRTLQPKGILDTMYRARLVENKINVALNSAKRKSTVKERSVVVKIVDWTD 246
            GLKTEIR EVR L  +GILD M+RARL E K NVA NS KRK TVKERSVVVK+V WTD
Sbjct: 181 NGLKTEIRGEVRMLDTEGILDIMHRARLAEIKNNVAFNSTKRKGTVKERSVVVKVVSWTD 240

Query: 247 YNLISKNLATDLKLPLDMYGDYNVVLGCGKKVKGDGICRGVLLQIGNDTYVEDFFPLQMG 306
           YNLISKNLATDLKL LDMYGDY+VVLG GK VKGDGICRGVLLQIGN+TY EDFFPLQMG
Sbjct: 241 YNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMG 300

Query: 307 EDDEVILGNLWLVALGKMEVDWKHLPMKLKVGKEIVNLRRDPSL 349
           EDDEVILGNLWLV LGKMEVDWK+L MKL+VGKEIV LR+DPSL
Sbjct: 301 EDDEVILGNLWLVDLGKMEVDWKNLTMKLEVGKEIVTLRKDPSL 342

BLAST of Lsi02G006470 vs. NCBI nr
Match: XP_016900762.1 (PREDICTED: uncharacterized protein LOC107991016 [Cucumis melo])

HSP 1 Score: 510.0 bits (1312), Expect = 1.6e-140
Identity = 258/331 (77.95%), Postives = 286/331 (86.40%), Query Frame = 0

Query: 7   MENQVEALETKLKKVTD-EVQNI-STMDNNVTALLQQIAQLLTVQQQQQRLPEYA-AHRI 66
           MEN VEAL+ KLKKV D EV NI +T DNN+T L+ Q+A LL     QQ LP+YA  HR+
Sbjct: 1   MENPVEALDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLL--NGHQQCLPQYAPTHRM 60

Query: 67  LDLELPMFDGTDSLMWILKMERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRCFRNWGKP 126
            +LELPMFDGTD+LMWILKMERYFEVHH+DDIA+MM+ +LLCMSGQALAWFRCF+NWGKP
Sbjct: 61  PNLELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKP 120

Query: 127 PESWGEFRGALYMRFGDDHSVCFSFIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKF 186
           PESW EFR +LYMRFGD  +VC  F+ L+QEGSV +YCSKFE+LGALLPEL   ++EAKF
Sbjct: 121 PESWDEFRDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKF 180

Query: 187 MTGLKTEIRLEVRTLQPKGILDTMYRARLVENKINVALNSAKRKSTVKERSVVVKIVDWT 246
           M GLKTEIR +VR L PK ILD M+RARL E K NVALNS KRK TVKERSV+VK+V WT
Sbjct: 181 MNGLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALNSTKRKGTVKERSVIVKVVSWT 240

Query: 247 DYNLISKNLATDLKLPLDMYGDYNVVLGCGKKVKGDGICRGVLLQIGNDTYVEDFFPLQM 306
           DYNLISKNLATDLKL LDMYGDY+VVLG GKKVKGDGICRGVLLQIGNDTYVEDFFPLQM
Sbjct: 241 DYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVEDFFPLQM 300

Query: 307 GEDDEVILGNLWLVALGKMEVDWKHLPMKLK 335
           GEDDEVILGNLWLVALGKMEVDWK+LPMKLK
Sbjct: 301 GEDDEVILGNLWLVALGKMEVDWKNLPMKLK 329

BLAST of Lsi02G006470 vs. NCBI nr
Match: TYK06549.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 5.8e-37
Identity = 107/336 (31.85%), Postives = 163/336 (48.51%), Query Frame = 0

Query: 66  LELPMFDGTDSLMWILKMERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRCFRNWGKPPE 125
           +E+P+F G D   W+ + ERYF++H + D  KM+ +  +   G AL W+R      K   
Sbjct: 127 VEMPVFAGEDPDSWLFRAERYFQIHKLSDSEKML-VSTISFDGPALNWYRSQEEREK-FT 186

Query: 126 SWGEFRGALYMRF--GDDHSVCFSFIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKF 185
           SW   +  L +RF    D  V   F+ ++QE +V DY + F+ L A L ++P+ +V+  F
Sbjct: 187 SWANLKERLLVRFRSSRDEKVLERFLRVKQESTVDDYRNLFDKLVAPLSDVPDPVVKDTF 246

Query: 186 MTGLKTEIRLEVRTLQPKGILDTMYRARLVENK--------------------------- 245
           M GL   IR EVR  +PKG+ + M  A+LVEN+                           
Sbjct: 247 MNGLFPWIRAEVRICRPKGLAEMMEFAQLVENREIERNEVNLNNFAGGKYSQQNTVNNRT 306

Query: 246 ------------------------INVALNSAKRKSTVKERSVVVKIVDWTDYNLISKNL 305
                                    N  + + K K  ++ER V++ I     +N IS+ L
Sbjct: 307 PANTNSDSKTNTNFPMRTITLRSSNNAEICTMKVKGKIQEREVIILIDYGATHNFISEKL 366

Query: 306 ATDLKLPLDMYGDYNVVLGCGKKVKGDGICRGVLLQIGNDTYVEDFFPLQMGEDDEVILG 349
              L+LP+   G Y V+LG G  V+G GIC  V +Q+ N    E+F PL++G  D V+LG
Sbjct: 367 VESLQLPVKETGHYGVILGSGTVVQGKGICENVEIQLSNWKVKEEFLPLELGGVD-VVLG 426

BLAST of Lsi02G006470 vs. NCBI nr
Match: KAA0037097.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 164.5 bits (415), Expect = 1.7e-36
Identity = 107/336 (31.85%), Postives = 162/336 (48.21%), Query Frame = 0

Query: 66  LELPMFDGTDSLMWILKMERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRCFRNWGKPPE 125
           +E+P+F G D   W+ + ERYF++H + D  KM+ +  +   G AL W+R      K   
Sbjct: 127 VEMPVFAGEDPDSWLFRAERYFQIHKLSDSEKML-VSTISFDGPALNWYRSQEEREK-FT 186

Query: 126 SWGEFRGALYMRF--GDDHSVCFSFIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKF 185
           SW   +  L +RF    D  V   F+ ++QE +V DY + F+ L A L ++P+ +V+  F
Sbjct: 187 SWANLKERLLVRFRSSRDEKVLERFLRVKQESTVDDYRNLFDKLVAPLSDVPDPVVKDTF 246

Query: 186 MTGLKTEIRLEVRTLQPKGILDTMYRARLVENK--------------------------- 245
           M GL   IR EVR  +PKG+ + M  A+LVEN+                           
Sbjct: 247 MNGLFPWIRAEVRICRPKGLAEMMEFAQLVENREIERNEVNLNNFAGGKYSQQNTVNNRT 306

Query: 246 ------------------------INVALNSAKRKSTVKERSVVVKIVDWTDYNLISKNL 305
                                    N  + + K K  ++ER V++ I     +N IS+ L
Sbjct: 307 PANTNSDSKTNTNFPMRTITLRSSNNAEICTMKVKGKIQEREVIILIDYGATHNFISEKL 366

Query: 306 ATDLKLPLDMYGDYNVVLGCGKKVKGDGICRGVLLQIGNDTYVEDFFPLQMGEDDEVILG 349
              L+LP+   G Y V+LG G  V+G GIC  V +Q+ N    E+F PL++G  D V+LG
Sbjct: 367 VESLQLPVKETGHYGVILGSGTVVQGKGICENVEIQLSNWKVKEEFLPLELGGVD-VVLG 426

BLAST of Lsi02G006470 vs. TAIR 10
Match: AT3G29750.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 79.7 bits (195), Expect = 5.1e-15
Identity = 67/240 (27.92%), Postives = 102/240 (42.50%), Query Frame = 0

Query: 148 FIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKFMTGLKTEIRLEVRTLQPKGILDTM 207
           +  +QQEGSVRDY  +FE+L      LP    E  F+ GL+  ++  VR L+P GI    
Sbjct: 9   YSGIQQEGSVRDYRERFEALCLRSVTLPGQGFEEMFLQGLQPSLQTAVRELKPNGI--NS 68

Query: 208 YRAR--------LVENKINVALNSAKRKSTVKE--------------------------- 267
           Y++R        LV+ K++V     K+K  + E                           
Sbjct: 69  YQSRQAELMSLTLVQAKLDVV---KKKKGVINELEELEQDSYTLRQGMEQLVIDLTRNKG 128

Query: 268 ---------RSVVVKIVDWTDYNLISKNLATDLKLPLDMYGDYNVVLGCGKKVKGDGICR 327
                      VVV I      N I   LA  LKLP  +    +V+LG  + ++  G C 
Sbjct: 129 MRFYGFILDHKVVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCL 188

Query: 328 GVLLQIGNDTYVEDFFPLQMGEDD-EVILGNLWLVALGKMEVDWKHLPMKLKVGKEIVNL 343
           G+ L +      E+F  L + + D +VILG  WL  LG+  V+W++        ++ + L
Sbjct: 189 GIRLWVQEVEITENFLLLDLAKTDVDVILGYEWLSKLGETMVNWQNQDFSFSHNQQWITL 243

BLAST of Lsi02G006470 vs. TAIR 10
Match: AT3G42723.1 (aminoacyl-tRNA ligases;ATP binding;nucleotide binding )

HSP 1 Score: 66.2 bits (160), Expect = 5.8e-11
Identity = 75/280 (26.79%), Postives = 122/280 (43.57%), Query Frame = 0

Query: 84  ERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRCFRNWGK-PPESWGEFRGALYMRFGDDH 143
           E YF  +++ +  + ++IV   + G    W +    W K  P SW EF+  +        
Sbjct: 279 ENYFGENNIPE-QERLQIVYSNLEGDIGQWIK--HLWKKNSPTSWKEFKCMMARETKTTM 338

Query: 144 SVCFS--FIALQQEGSVRDYCSKFESLGALLPELPEDLVEAKFMTGLKTEIRLEVRTLQP 203
            V     +  +QQEGSVR+Y  +FE+L      LP   +EA F+ GL+  ++  VR L+P
Sbjct: 339 KVNHQPHYSGIQQEGSVREYRERFEALCLGSVILPGQGLEALFLQGLQPSLQTAVRELKP 398

Query: 204 KGILDTMYRARLVENK---------INVALNSAKRKSTVKE-RSVVVKIVDWTDY----- 263
            GI+  M  A+ +E           ++V        +T  E RS+V+      D      
Sbjct: 399 NGIVQMMDTAQWLEESNSLMVYGSGLSVQTEPKVYPTTQAELRSMVLMGYMREDLKDTPR 458

Query: 264 --NLISKNLATDLKLP---------LDMYG-----DYNVVLGCGKKVKGDGICRGVLLQI 323
             N  +  L  + +LP         +  YG     + +        VK    C+ + L+I
Sbjct: 459 PANEDTGTLKQEHELPGTEVATCRGMRFYGYILQQEVSFSYRLASDVKRS--CQEISLRI 518

Query: 324 GNDTYVEDFFPLQMGED-DEVILGNLWLVALGKMEVDWKH 329
            +   VED+    +  D  +VILG  WL  LG+ EV+W++
Sbjct: 519 NDIDIVEDYCVWDLKRDVVDVILGYEWLSKLGETEVNWQN 553

BLAST of Lsi02G006470 vs. TAIR 10
Match: AT1G67020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; Has 72 Blast hits to 72 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 1.8e-04
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 0

Query: 66  LELPMFDGTDSLMWILKMERYFEVHHMDDIAKMMEIVLLCMSGQALAWFRC------FRN 121
           +E+P+FDG+    W  K+ER+F V    D  K +++V L + G AL WF        FR+
Sbjct: 110 IEMPVFDGSGVYEWFSKVERFFRVGRYQDSDK-LDLVALSLEGVALKWFLREMSTLEFRD 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BJD99.6e-14777.68Aminoacyl-tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24... [more]
A0A1S4DXQ77.9e-14177.95uncharacterized protein LOC107991016 OS=Cucumis melo OX=3656 GN=LOC107991016 PE=... [more]
A0A0A0LUB32.0e-8372.53Retrotrans_gag domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064... [more]
A0A5D3C8602.8e-3731.85Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7T6B18.1e-3731.85Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
KAA0056890.12.0e-14677.68aminoacyl-tRNA ligase [Cucumis melo var. makuwa] >TYJ99393.1 aminoacyl-tRNA liga... [more]
KAE8652678.12.9e-14578.49hypothetical protein Csa_013756 [Cucumis sativus][more]
XP_016900762.11.6e-14077.95PREDICTED: uncharacterized protein LOC107991016 [Cucumis melo][more]
TYK06549.15.8e-3731.85transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa][more]
KAA0037097.11.7e-3631.85Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT3G29750.15.1e-1527.92Eukaryotic aspartyl protease family protein [more]
AT3G42723.15.8e-1126.79aminoacyl-tRNA ligases;ATP binding;nucleotide binding [more]
AT1G67020.11.8e-0437.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..31
NoneNo IPR availablePANTHERPTHR34482:SF14RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 3..227
NoneNo IPR availablePANTHERPTHR34482DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKEcoord: 3..227
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 244..317
e-value: 8.91197E-7
score: 44.6348
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 243..342
e-value: 4.1E-7
score: 31.7
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 102..188
e-value: 1.4E-8
score: 34.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G006470.1Lsi02G006470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016874 ligase activity