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Lsi02G006190 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACCATTTTGGAGCCATCAGCGAGGTTATAATTGCGAAATGCATGGGGCGGAAGAGGGTGGTTGTGGCAATTAGGGATGGCCAGCTTGGCATTACCACTGCAGTTGCCTACGCCAAATATGGTTTAGATTGCACCATTTTCATGGCCTCTTATGATATCGAGAGGCAATCTTCAAGTGTCCGATTAATCAACTCCTTAGATGCTCAGGTACCATTTTACTATTCTTTTTATAGATGAATTAAAGATAAAAGGGGCAACAAGGATGAACGTTTTAGAAAGTGTTTGAGGCGCTGAGTTTGACTTTTGAAATTCTAAAGTTAATATGTTGAACTTAGGAAGTTTTTGTTTGGAATGCAGATTTATGAAAATTGAGTTTCTTGATAAATGTGCAAACTTCAATAGTGAACTATTGGACTTCTTGTTGCAATCGAGTTATATTTTAACACTGACTTATGAAGTCAGTGGACCAAACACCCTCTTAATCACATCTTATCTAACCCTTTACAAAGCATAAATTCATATTTTATATATTTTTTGACATTTAAAGTTAACGCCAACTTATGATGTCGGTGGTCTTACATATTTTATATATTTTTCACATTTATTCTCTCATTAAATTTTTTATTGATTTAGTATTTTGTTGAGTTGTTTCAAATATAGAAAAATTAGCTAAACTATTTACAAATATAAAAAAAAATATTGTTTATCAGCGATAGATCGCGAAAGAATTCTATCGCTTGAGCGATAGACAGCGATAGAAGTCTGTTGCTCAAGCGATAGAATTCTATCTCGGTCTATCGCTGACAAACAGTAAAAATTTTCTATATTTGTAAATAGTTTGATATTTTTTCGGTCTATAGTAATTTCCTATTATTTTTCTTAAATTTTTTTCCAAAATAAGTTGGTTGAAACAAATAAAATGAAATTTAAATTATATAAATTTTAAATAATTATCTTGCAAAAAGAAATAAATTAACTATATTTATAATTGAGAACTTTTATGAATTAGTACCAGACTTTTTTTATAAGGAAAATATATTCAGTCAGATTCAACCAGCCACAACATCCTTAAAAGTAATTTCAAAACTCTAATAATAACTAACCAAATAGTATATTTAGTCCCATAAAAAAGAAGCTTGATTAGAAGCTTATAAAAAAATTAATTGAAAGAACTTTAGGTTAATTTATAAGGTTGTCTGATCATTAAACTTTTGATTTTGTGTTAAATAAATCTTTATTTTTATTTTTTTTCTGTCGGTTAAATACTTAATCTGTTCAACACATCTTTTAAAATTCAAGGATGTAATATATACAAAATTAAAAATTTATATATGATTTCATGCCTTAACATAAAATTCAGCTAATTATTATATGTCAAATATAAATTAGTTCTTTTAAAGAAATTAATATATTAGTAAGGGGTTGAAAGTTGAAGGATTTATTATACATTTTTATAAAATTTAAGGATCATCTGTTAGAAATACACCTGAAAGTTAGAGGTTGTATTAAATAATAGATAACATAGGTTCTAGGTTGTATTAAATAATAGATAACATAAGTTCTATCTCAAAATTAATTGACAAAGAGAGGAGTAACTTCATTTATTTTATGACGAGTAGGAGGTCATTTAATTTTTTTTTTTTTTTTTAAATCTGGTATCCTCACCATCAAACACCTTTAAAAGTTTATGGGCAAAATAAACACAAATTAAAATATTACTTTTAATAAATATGAACATTTCAACTATATATTTCATAAATATCAATTTTGAAAAAAAAAAAATAAGATTTACCATGACTCAAAATCTTCAAATTTTTTATTCGAAATTTGATATAATTAGGTTCAATTTTTTCCATGTTTAGATATTCTCATTAAATGAATATTATTTTATTATTTGACTAAAATAGTTGGTGAATTTTTTTCCCCATCTTCTTGTTGTCTAATTTGTCTATATATGTTTTTTTTAATAATCTTGTGTAGTTTATGTATATTATTTGTCCAAGTTGCTGGTATTTTTACTAGAATAATAGATGTTATTTTGTCTTGTGTAACATATATAATTAATATGTATAGTTCATTTAAAGTTGAATATTCAAAATGTTGACAAAGAGTTTATTATATATATTGTTTGCTTTATTATATATACATAAATATAAATTACAGTAATTACATGTTTGAAAAATTAGATTAGTAATTTGAAAGATGGTTTCGACATTAAATTACTTAGACAATGACAATGATTTCTAAAAAAATGATAAAAAAAATAAAAAATTACTTTAAACAGAAAAATATCCAACTATTTACAAATATAGAAAAACTTCGCGATAGACTTTTATCGTTGTCTATCGCTCGAGTGATAGAATTCTATCACAGTCTATCGCTGATAGACAGTAAATTTCCATATATTTGTAAATAGTTTAGCTCATTTTTTTATATTTAAAAATGGCCTTAAAAAAATTATATTTTTGAAAATATAAGGTCCAAATAGTATATTCTCGTAATTAACCCTATGGAGACTATGAGCCAGGTGGAACCGGTAAAGGGAAACTTGGCTATAGCATCACAGGCCGCGAGGGTAGAGTGGACGATGGTTACGGCGGAGGAGTGGTTGAGGAACTGGGAAAGGAGCTCTTATCTGATGCGCACAGTGGTAGAGCCGCACCCAGGGCTAGATGTGGCGAGGGAGTCTCAGTCGATGATTGGAGAAGAGACGAAAAAACAAGATAGGGAGGAATGGGGAGGCAAATTACCAGATGTGGTTTTGGGCTACATCGGTAGTACCTCAAATGCCTTGGCCCTCTTCCATGAGCTCATCCATGAAGAGGATGTGAGGCTAATCGGGGTCGAGGCTGATAGTGAACAGTAAGTAAAATCCACCACGATAAATTACCGATCAACTTAAAAACTTTTAGTTTAGATTTTAGCAATATAGAAGGTTTTTAAACAAAATAATAATAATAATAATAAGTATATAGTTTTATAATTATCTACATTTAATGAGCAATTATTGTAAAAATAGTTTGATCTTATTTTTATATAGAAACATAAAACTAAAAAAATTAAGAAACTTTTTTTATTATTTTTTAGAAATATATAACCAAGAAAACAATTATATTTCTTTTTTCAATTTAAAAAAAATACCAAATATATTTTTTGGTTTTTTGTTTAAAAAAAAAAAACTAAAAACTATACCCAAACAGGTATGATTTTTGTTTTTGAAGAACAGAAAACAAAAAATAAATTTTTAAAAACCACAAACATGACCTTAGCTTTCATTTTTCAATTTCTGAAAGGTAAGTGTTTATTTTATATTAATTATATATCATTAATATATCTTATCAATAGGACCTAAAAGTTATATTAATGATATTTGACTCTTTTTTTCTTTTAGGTACTATAATTTGTCTGCTCATTTGTTTCGTTATCAATATACCATATCAATAGGTTAAAAATAGCAAATCAATGATAATTTAATATCAATAACAATTACTAGTAAATTTCTAATAGCAATGTATCACTAACATAACATTTTTTATATCTATCATCAGTAAATGTGAATTAATGATAACTAAATATGATAGACATAGAAATGGTATGTTCGATAGTAAAACCATAAAAACACTCAACCAATGATAAAAATGGTCTATCAAAAGATTACTATCTAATAGACAAAAATGAAATAGTCTAATAATAATTTTAAAAAAAAAAATTATCAATAATGAACATATTAATGGTCAAATTGACAATTGATATAAAAAAAATTGCTAGCAATAGACAGAAAGATTCTCAATTAGATAGAGAAATCAATCCATGATAAACTAGTGATGGAGGCCTATCATTAATCGACTATAAAAATGGTGCAACTAGGAATATATCAACAAACTAAAAAATTGAATCGATCCATTGGTTTTGTTTTGTTTTTTTAGCATAAAATTGAACATTTTGGTTTGTACGTGAAGAAAACAAAAAAATTATTGGTTTGAATCAATTTTCATTGAAAAAAAGGGGTTAAAATTGAACCATACTAATGATATACACAACCCTTAAAAATACACACTCTATAACCCAAGATTCTTTTTAGTATTTTAATTATGAGTATTATTTAGGTACAACCAATATTACACCCATCTTCGTGCATCCCCTTCAATCACAAAGGAAAAAACATATTAAAAATAATTTTTTAAAAAAGGAATACCACATGGCAACTTGAGAATGGGCATTTGGGTGGGCTGCACAAAGATAGGCGTTGCCTGAGATACATCCAAGTATTTTTCTTTAATTATTATGGCTCATGTAAATTGTTGTTTGGAAAAATGACCCACTATTTGTATGTTTGTTATTTAGAAAAATGCCAAGAAAAAATAAAAATGTCTACCTTCAAATCTATAAAAATAAAAATAAAGAAGAATTATTTTCAAATATAGAAAAATGAGTCAAACTACTTACAAATATAAAAAAAATAAAAATAAAAATAAAAAAATAAAAATTTACTGTCTATCAGCGATAGATCGCTGTAGAATTCTGTCACTTGAATGATAAACTGCAATAGACTTCTATCGCGTATCGTGATCTATCGCTGATAGATAGTAAAAATTTTCTATATTTGTAAATAATTTGATATTTTTTCTATTTATAGTAATTTTCCAAAATTTAAATTTGAATAGAGTTAAAAACGCTCCATTCAAAACAAAAGGGGAAAAATGAAAATTGGAAAAAAAAAATCACCGAAAAAAAACTAAGAATCAAACTGATAATAAACAATAAAAACTAATTCATTGTTTTTTTTTTCTTCTAATAAATATTGATTTGGTTCTCTTCTTTATAAAACATATCGATTTGATTTGGTTTTTGGTTTACTCCAAAAACTACAAAATCGAACTTAACTATAATTCTTACGTGTAACAATAATAATAGCATATTTAGAAATTATTTGTTTGTGTGGCAGGTTAACAAATTTTTCTATCCATATTACAATTATGTTTAAGTCTATGAATACTTAAACAAATAGGAGTTGTAGAAGTTATTTTTATGAATGGTATATGTTGAAAATGAACACACAGGCTAGAATACCAAAGAGAAGAGCCAAAGCTGAGGTTTCTGAAGGAGACAGAGAAAATTGAATATCAGAAGGTGGCCGATTCAGAGGCGGCGGAAGCGTACGATCTGGTTGTTAAGTTGGAAAACAAAAACATATACCCATCGAAGGATGATTCTTATGCCTTTGCGTATCATCACAAGCTTTGCCCCACCCTGCCGGACGGCTACAAGGTGGTCGTGGTGATATAA ATGAACCATTTTGGAGCCATCAGCGAGGTTATAATTGCGAAATGCATGGGGCGGAAGAGGGTGGTTGTGGCAATTAGGGATGGCCAGCTTGGCATTACCACTGCAGTTGCCTACGCCAAATATGGTTTAGATTGCACCATTTTCATGGCCTCTTATGATATCGAGAGGCAATCTTCAAGTGTCCGATTAATCAACTCCTTAGATGCTCAGGTGGAACCGGTAAAGGGAAACTTGGCTATAGCATCACAGGCCGCGAGGGTAGAGTGGACGATGGTTACGGCGGAGGAGTGGTTGAGGAACTGGGAAAGGAGCTCTTATCTGATGCGCACAGTGGTAGAGCCGCACCCAGGGCTAGATGTGGCGAGGGAGTCTCAGTCGATGATTGGAGAAGAGACGAAAAAACAAGATAGGGAGGAATGGGGAGGCAAATTACCAGATGTGGTTTTGGGCTACATCGGTAGTACCTCAAATGCCTTGGCCCTCTTCCATGAGCTCATCCATGAAGAGGATGTGAGGCTAATCGGGGTCGAGGCTGATAGTGAACAGTTAACAAATTTTTCTATCCATATTACAATTATGTTTAAGCTAGAATACCAAAGAGAAGAGCCAAAGCTGAGGTTTCTGAAGGAGACAGAGAAAATTGAATATCAGAAGGTGGCCGATTCAGAGGCGGCGGAAGCGTACGATCTGGTTGTTAAGTTGGAAAACAAAAACATATACCCATCGAAGGATGATTCTTATGCCTTTGCGTATCATCACAAGCTTTGCCCCACCCTGCCGGACGGCTACAAGGTGGTCGTGGTGATATAA ATGAACCATTTTGGAGCCATCAGCGAGGTTATAATTGCGAAATGCATGGGGCGGAAGAGGGTGGTTGTGGCAATTAGGGATGGCCAGCTTGGCATTACCACTGCAGTTGCCTACGCCAAATATGGTTTAGATTGCACCATTTTCATGGCCTCTTATGATATCGAGAGGCAATCTTCAAGTGTCCGATTAATCAACTCCTTAGATGCTCAGGTGGAACCGGTAAAGGGAAACTTGGCTATAGCATCACAGGCCGCGAGGGTAGAGTGGACGATGGTTACGGCGGAGGAGTGGTTGAGGAACTGGGAAAGGAGCTCTTATCTGATGCGCACAGTGGTAGAGCCGCACCCAGGGCTAGATGTGGCGAGGGAGTCTCAGTCGATGATTGGAGAAGAGACGAAAAAACAAGATAGGGAGGAATGGGGAGGCAAATTACCAGATGTGGTTTTGGGCTACATCGGTAGTACCTCAAATGCCTTGGCCCTCTTCCATGAGCTCATCCATGAAGAGGATGTGAGGCTAATCGGGGTCGAGGCTGATAGTGAACAGTTAACAAATTTTTCTATCCATATTACAATTATGTTTAAGCTAGAATACCAAAGAGAAGAGCCAAAGCTGAGGTTTCTGAAGGAGACAGAGAAAATTGAATATCAGAAGGTGGCCGATTCAGAGGCGGCGGAAGCGTACGATCTGGTTGTTAAGTTGGAAAACAAAAACATATACCCATCGAAGGATGATTCTTATGCCTTTGCGTATCATCACAAGCTTTGCCCCACCCTGCCGGACGGCTACAAGGTGGTCGTGGTGATATAA MNHFGAISEVIIAKCMGRKRVVVAIRDGQLGITTAVAYAKYGLDCTIFMASYDIERQSSSVRLINSLDAQVEPVKGNLAIASQAARVEWTMVTAEEWLRNWERSSYLMRTVVEPHPGLDVARESQSMIGEETKKQDREEWGGKLPDVVLGYIGSTSNALALFHELIHEEDVRLIGVEADSEQLTNFSIHITIMFKLEYQREEPKLRFLKETEKIEYQKVADSEAAEAYDLVVKLENKNIYPSKDDSYAFAYHHKLCPTLPDGYKVVVVI Homology
BLAST of Lsi02G006190 vs. ExPASy Swiss-Prot
Match: P43283 (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays OX=4577 GN=TSB1 PE=2 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 1.6e-42 Identity = 107/302 (35.43%), Postives = 165/302 (54.64%), Query Frame = 0
BLAST of Lsi02G006190 vs. ExPASy Swiss-Prot
Match: P25269 (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TSB2 PE=1 SV=2) HSP 1 Score: 172.2 bits (435), Expect = 8.1e-42 Identity = 106/302 (35.10%), Postives = 163/302 (53.97%), Query Frame = 0
BLAST of Lsi02G006190 vs. ExPASy Swiss-Prot
Match: O50046 (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata OX=16922 GN=TSB PE=2 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 1.1e-41 Identity = 106/302 (35.10%), Postives = 163/302 (53.97%), Query Frame = 0
BLAST of Lsi02G006190 vs. ExPASy Swiss-Prot
Match: P14671 (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TSB1 PE=2 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 2.4e-41 Identity = 104/302 (34.44%), Postives = 163/302 (53.97%), Query Frame = 0
BLAST of Lsi02G006190 vs. ExPASy Swiss-Prot
Match: P43284 (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays OX=4577 GN=TSB2 PE=2 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 3.1e-41 Identity = 104/302 (34.44%), Postives = 164/302 (54.30%), Query Frame = 0
BLAST of Lsi02G006190 vs. ExPASy TrEMBL
Match: A0A5D3BMJ6 (Tryptophan synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005960 PE=3 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 3.9e-55 Identity = 143/302 (47.35%), Postives = 182/302 (60.26%), Query Frame = 0
BLAST of Lsi02G006190 vs. ExPASy TrEMBL
Match: A0A1S3B3A1 (Tryptophan synthase OS=Cucumis melo OX=3656 GN=LOC103485497 PE=3 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 3.9e-55 Identity = 143/302 (47.35%), Postives = 182/302 (60.26%), Query Frame = 0
BLAST of Lsi02G006190 vs. ExPASy TrEMBL
Match: A0A6J1K0T4 (Tryptophan synthase OS=Cucurbita maxima OX=3661 GN=LOC111490065 PE=3 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 6.7e-55 Identity = 146/302 (48.34%), Postives = 180/302 (59.60%), Query Frame = 0
BLAST of Lsi02G006190 vs. ExPASy TrEMBL
Match: A0A0A0LUA1 (Tryptophan synthase OS=Cucumis sativus OX=3659 GN=Csa_1G064170 PE=3 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54 Identity = 141/302 (46.69%), Postives = 182/302 (60.26%), Query Frame = 0
BLAST of Lsi02G006190 vs. ExPASy TrEMBL
Match: A0A6J1GSL9 (Tryptophan synthase OS=Cucurbita moschata OX=3662 GN=LOC111457067 PE=3 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 9.6e-54 Identity = 143/302 (47.35%), Postives = 180/302 (59.60%), Query Frame = 0
BLAST of Lsi02G006190 vs. NCBI nr
Match: XP_038895944.1 (LOW QUALITY PROTEIN: tryptophan synthase beta chain 1-like [Benincasa hispida]) HSP 1 Score: 238.8 bits (608), Expect = 5.4e-59 Identity = 145/269 (53.90%), Postives = 173/269 (64.31%), Query Frame = 0
BLAST of Lsi02G006190 vs. NCBI nr
Match: KAA0056875.1 (tryptophan synthase beta chain 1-like [Cucumis melo var. makuwa] >TYJ99378.1 tryptophan synthase beta chain 1-like [Cucumis melo var. makuwa]) HSP 1 Score: 224.9 bits (572), Expect = 8.1e-55 Identity = 143/302 (47.35%), Postives = 182/302 (60.26%), Query Frame = 0
BLAST of Lsi02G006190 vs. NCBI nr
Match: XP_008441364.1 (PREDICTED: tryptophan synthase beta chain 1-like [Cucumis melo]) HSP 1 Score: 224.9 bits (572), Expect = 8.1e-55 Identity = 143/302 (47.35%), Postives = 182/302 (60.26%), Query Frame = 0
BLAST of Lsi02G006190 vs. NCBI nr
Match: XP_022994295.1 (tryptophan synthase beta chain 1-like [Cucurbita maxima]) HSP 1 Score: 224.2 bits (570), Expect = 1.4e-54 Identity = 146/302 (48.34%), Postives = 180/302 (59.60%), Query Frame = 0
BLAST of Lsi02G006190 vs. NCBI nr
Match: XP_038893791.1 (tryptophan synthase beta chain 1-like [Benincasa hispida]) HSP 1 Score: 223.0 bits (567), Expect = 3.1e-54 Identity = 142/302 (47.02%), Postives = 181/302 (59.93%), Query Frame = 0
BLAST of Lsi02G006190 vs. TAIR 10
Match: AT5G28237.1 (Pyridoxal-5'-phosphate-dependent enzyme family protein ) HSP 1 Score: 174.5 bits (441), Expect = 1.2e-43 Identity = 114/291 (39.18%), Postives = 158/291 (54.30%), Query Frame = 0
BLAST of Lsi02G006190 vs. TAIR 10
Match: AT4G27070.1 (tryptophan synthase beta-subunit 2 ) HSP 1 Score: 172.2 bits (435), Expect = 5.8e-43 Identity = 106/302 (35.10%), Postives = 163/302 (53.97%), Query Frame = 0
BLAST of Lsi02G006190 vs. TAIR 10
Match: AT5G54810.1 (tryptophan synthase beta-subunit 1 ) HSP 1 Score: 170.6 bits (431), Expect = 1.7e-42 Identity = 104/302 (34.44%), Postives = 163/302 (53.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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