Lsi02G006130 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G006130
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Patatin
Location	chr02: 5437398 .. 5437739 (-)
RNA-Seq Expression	Lsi02G006130
Synteny	Lsi02G006130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGCTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCGTTGGTTCACTCGTCAAGAAGGAAATTGATTATTTTGCCAAGATTGAGCTTGAAAGCTGCAGCAGCTCACAGAGGTCTCAAGGGCCTAACATGGCTTCTTCTGGCTGCAGCAGTTCATCATCCACCTTCTGGCAGTCTGTAATGTCGTGGCGAAGGAAGAAGAAGCAAACCAGCAATTGCTTTGTCCCAAAAATGTGCTCGACTTTCGATGTTGCGAGAAGCAAGCGCTTGAATAAGATTTCTGGGTTAAGTTATACGATCCTTCAGAATGATTTCCACAGCTTGCACATGTAG

mRNA sequence

ATGGCTGCAGCTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCGTTGGTTCACTCGTCAAGAAGGAAATTGATTATTTTGCCAAGATTGAGCTTGAAAGCTGCAGCAGCTCACAGAGGTCTCAAGGGCCTAACATGGCTTCTTCTGGCTGCAGCAGTTCATCATCCACCTTCTGGCAGTCTGTAATGTCGTGGCGAAGGAAGAAGAAGCAAACCAGCAATTGCTTTGTCCCAAAAATGTGCTCGACTTTCGATGTTGCGAGAAGCAAGCGCTTGAATAAGATTTCTGGGTTAAGTTATACGATCCTTCAGAATGATTTCCACAGCTTGCACATGTAG

Coding sequence (CDS)

ATGGCTGCAGCTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCGTTGGTTCACTCGTCAAGAAGGAAATTGATTATTTTGCCAAGATTGAGCTTGAAAGCTGCAGCAGCTCACAGAGGTCTCAAGGGCCTAACATGGCTTCTTCTGGCTGCAGCAGTTCATCATCCACCTTCTGGCAGTCTGTAATGTCGTGGCGAAGGAAGAAGAAGCAAACCAGCAATTGCTTTGTCCCAAAAATGTGCTCGACTTTCGATGTTGCGAGAAGCAAGCGCTTGAATAAGATTTCTGGGTTAAGTTATACGATCCTTCAGAATGATTTCCACAGCTTGCACATGTAG

Protein sequence

MAAAATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTILQNDFHSLHM

Homology

[Close]

BLAST of Lsi02G006130 vs. ExPASy TrEMBL
Match: A0A1S4DSE9 (uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.6e-42
Identity = 91/110 (82.73%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 4   AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSV 63
           AATAPVAIGTRGT+GSL+KKEIDYFAKIELE+  SSQRSQGP MASSGC SS  TFWQS+
Sbjct: 2   AATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSI 61

Query: 64  MSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTILQNDFHSLHM 114
           MSWRRKKK TSN F+ KMCSTFD +RS R+NKISGLSYTILQNDFHSLH+
Sbjct: 62  MSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of Lsi02G006130 vs. ExPASy TrEMBL
Match: A0A0A0LX43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.0e-41
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 4   AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSV 63
           AA APVAIGTRGT+GSLVKKEIDYFAKIELE+  SSQRSQGP MASSGC SS  TFWQS+
Sbjct: 18  AAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSL 77

Query: 64  MSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTILQNDFHSLHM 114
           MSWRRK K TSN FV KMCSTFD +RS R+NKISGLSYTILQNDFHSLHM
Sbjct: 78  MSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 127

[Close]

BLAST of Lsi02G006130 vs. ExPASy TrEMBL
Match: A0A5A7UTL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005900 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.0e-33
Identity = 77/96 (80.21%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 4   AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSV 63
           AATAPVAIGTRGT+GSL+KKEIDYFAKIELE+  SSQRSQGP MASSGC SS  TFWQS+
Sbjct: 18  AATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSI 77

Query: 64  MSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGL 100
           MSWRRKKK TSN F+ KMCSTFD +RS R+NKISG+
Sbjct: 78  MSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGI 113

[Close]

BLAST of Lsi02G006130 vs. ExPASy TrEMBL
Match: A0A6J1CHB1 (uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010862 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.7e-31
Identity = 80/111 (72.07%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 4   AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSG-CSSSSSTFWQS 63
           AATAPVAIGTRGTVGSLVKKEIDYFAKIE E CS      G +MASS   SSS  TFW +
Sbjct: 18  AATAPVAIGTRGTVGSLVKKEIDYFAKIEFERCS------GNDMASSSRRSSSPPTFWHT 77

Query: 64  VMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTILQNDFHSLHM 114
           VMSWRRKKK+  N F+ K+CS FDV+ S RLNKISG +YTILQNDF+SLHM
Sbjct: 78  VMSWRRKKKRIGNRFITKICSAFDVSGSNRLNKISGFNYTILQNDFNSLHM 122

[Close]

BLAST of Lsi02G006130 vs. ExPASy TrEMBL
Match: A0A5N6QB68 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000249 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 58/108 (53.70%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 5   ATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNM---ASSGCSSSSSTFWQ 64
           A APVAIGTRGTVGSLV+KEI+YF KIE++ C SS++ QG  +   ++SG S+S  +FW 
Sbjct: 18  AIAPVAIGTRGTVGSLVRKEIEYFRKIEIDRCGSSRKPQGQIVDVASTSGRSASRPSFWF 77

Query: 65  SVMSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTILQNDFH 110
            +M+W+RKK+++S+  +P +CS  +VA S RLN+I G +Y IL+ND H
Sbjct: 78  LMMTWKRKKQRSSSGILPSICSAVEVADSNRLNRIPGYNYRILKNDLH 125

[Close]

BLAST of Lsi02G006130 vs. NCBI nr
Match: XP_016898893.1 (PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 7.3e-42
Identity = 91/110 (82.73%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 4   AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSV 63
           AATAPVAIGTRGT+GSL+KKEIDYFAKIELE+  SSQRSQGP MASSGC SS  TFWQS+
Sbjct: 2   AATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSI 61

Query: 64  MSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTILQNDFHSLHM 114
           MSWRRKKK TSN F+ KMCSTFD +RS R+NKISGLSYTILQNDFHSLH+
Sbjct: 62  MSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of Lsi02G006130 vs. NCBI nr
Match: KGN64543.2 (hypothetical protein Csa_013063 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 6.2e-41
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 4   AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSV 63
           AA APVAIGTRGT+GSLVKKEIDYFAKIELE+  SSQRSQGP MASSGC SS  TFWQS+
Sbjct: 2   AAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSL 61

Query: 64  MSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTILQNDFHSLHM 114
           MSWRRK K TSN FV KMCSTFD +RS R+NKISGLSYTILQNDFHSLHM
Sbjct: 62  MSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 111

[Close]

BLAST of Lsi02G006130 vs. NCBI nr
Match: XP_011648422.1 (uncharacterized protein LOC105434455 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 6.2e-41
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 4   AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPNMASSGCSSSSSTFWQSV 63
           AA APVAIGTRGT+GSLVKKEIDYFAKIELE+  SSQRSQGP MASSGC SS  TFWQS+
Sbjct: 2   AAIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSL 61

Query: 64  MSWRRKKKQTSNCFVPKMCSTFDVARSKRLNKISGLSYTILQNDFHSLHM 114
           MSWRRK K TSN FV KMCSTFD +RS R+NKISGLSYTILQNDFHSLHM
Sbjct: 62  MSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 111

[Close]

BLAST of Lsi02G006130 vs. NCBI nr
Match: KAG6584077.1 (hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35
Identity = 84/113 (74.34%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 4   AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCS--SSQRSQGPNMASSGCSSSSSTFWQ 63
           AATA VAIGTRGT+GSL+KKEIDYFAKIELE CS  SSQR Q P+MA+SGCSSS  TFW 
Sbjct: 2   AATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSRSSQRPQAPDMATSGCSSSPPTFWH 61

Query: 64  SVMSWRRKKKQTSNCFVPKMCST-FDVARSKRLNKISGLSYTILQNDFHSLHM 114
           SVMSWRRKKK++ + FVPK+CS+ FDV+ S ++NKISG +YTILQN+FHSLHM
Sbjct: 62  SVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGFNYTILQNNFHSLHM 114

[Close]

BLAST of Lsi02G006130 vs. NCBI nr
Match: KAG7019678.1 (hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.5 bits (397), Expect = 6.6e-35
Identity = 83/113 (73.45%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 4   AATAPVAIGTRGTVGSLVKKEIDYFAKIELESCS--SSQRSQGPNMASSGCSSSSSTFWQ 63
           AATA VAIGTRGT+GSL+KKEIDYFAKIELE CS  SSQR Q P+MA+SGCSS   TFW 
Sbjct: 18  AATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSRSSQRPQAPDMATSGCSSLPPTFWH 77

Query: 64  SVMSWRRKKKQTSNCFVPKMCST-FDVARSKRLNKISGLSYTILQNDFHSLHM 114
           SVMSWRRKKK++ + FVPK+CS+ FDV+ S ++NKISG +YTILQN+FHSLHM
Sbjct: 78  SVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGFNYTILQNNFHSLHM 130

[Close]

BLAST of Lsi02G006130 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-11
Identity = 42/109 (38.53%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 7   APVAIGTRGTVGSLVKKEIDYFAKI-----ELESCSSSQRSQGPNMASSGCSSSSSTFWQ 66
           AP+AIGTRGT+GSLV+KEIDYF        + +    +             SSS    W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 67  SVMSWRRKKKQT---SNCFVPKMCSTFDVARSKRLNKISGLSYTILQND 108
           S   WR+KK+QT      F P MCS  +V+     N++ G +Y IL++D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGE---NRVPGFNYRILKSD 108

The following BLAST results are available for this feature:

BLAST of Lsi02G006130 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G006130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DSE9	3.6e-42	82.73	uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=...	[more]
A0A0A0LX43	3.0e-41	83.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1	[more]
A0A5A7UTL1	1.0e-33	80.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CHB1	3.7e-31	72.07	uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A5N6QB68	1.6e-21	53.70	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000249 PE=4 SV=1	[more]

BLAST of Lsi02G006130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016898893.1	7.3e-42	82.73	PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]	[more]
KGN64543.2	6.2e-41	83.64	hypothetical protein Csa_013063 [Cucumis sativus]	[more]
XP_011648422.1	6.2e-41	83.64	uncharacterized protein LOC105434455 [Cucumis sativus]	[more]
KAG6584077.1	1.3e-35	74.34	hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019678.1	6.6e-35	73.45	hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lsi02G006130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	4.2e-11	38.53	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..57
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 3..112
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 3..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G006130.1	Lsi02G006130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000162	tryptophan biosynthetic process
cellular_component	GO:0005737	cytoplasm