Lsi02G005950 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G005950
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr02: 5286193 .. 5288026 (+)
RNA-Seq ExpressionLsi02G005950
SyntenyLsi02G005950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATAGTAGGAGATGTCCTATTCACCACTACTCTATGTGTTGTATGTTTGTATATTTGTACGTACTATAAAGTTTTATTACTTTATTTAATTAGTCCCTTATAGCCTCTTTATTTATCACAGGTAAAAACAATAATAATTTTACTTTTTTTAAAAAGTCAAAATTTCTTGTTACACGACAATTTTTAATTGGACAACTAGTAGGCTCGGTATAGCCTAGACAACATCTAAGTATTTTTCTAAAAAAAAATGAGTTAGAGATTAGATAAAGTTTTAATATGATAAAATTTTGAAAATGTAGTAGCAATGTCTCATTCCTTGCAAGATTGGAAAGTGAATAAGTGTGTTCGACTAATAGCAGGCAGCCCAGTGATGGAGTTAAGTACAAGATTAAAAAAATGAGTTAGTCAAAATTTTGTTTAAATTTAATGATTTTTTATAGAGATGTTTTAAATTTATTCTTAAAAATTCAGAGACTAAATTAGTCAATCTTCATAGTTCAAGGACGAAAAAAGTATAACTTTTAACTGTTTAGGTGTTTATTTTTCAATACTTCAATACTTTTCTATGTAATTTGTAATTTTGTTTAGGTATTTATTTTCCAATACTTACAATATTTTTTTTTTCTGTTATTTGTAATTTCTCTGTCAAAAGAAATGTCATGTCGGCTAAATGAATATATATATATAATTGAAAGCAAAGAAAAGCAAGAAGAAAGCATGTGCGAGACACGTGGATGGAGGACATTGGAAAGACACGTTGACGGTGTGGATGGTTCTGAGATTTGATCAACTTGAATATGTGGTGGTGAAAGTGTCCTTAGGGAAAAGCCCACTTTTCTTTTTCTTTCTTTTGAGAAACTTGCTTCACCAACTCATCCTTCTCAACTTTGCACAAACGTTAATTAGTACAAACCAAAACCTCAGACAAAACGTAAATTAACCTGGGAACCTACGGGTAAAACTGGTATCTACATGTACATGCCACAAATAGACAAAAACATAATCCAATAGTTTCACCACCGAATGCTTGTTTTCAGCTCCAAAACACAATGCCCAAGCTTTGATTTTAATCCCATCTTTTCCATCAAACGAATACAAGATTGGAGGCTGTGGGAAATTTTGGCTTTTCCTTGATTGTGCATCAGACTGTGATTAGGAATTCAGGCCTTGAATTTTGCTTTATATGTATTTATATATGTATATTTCATCGTAGGGCATTCACAAAAGCCATCAACGAATCAACATCCCTCTTCTCAGATGGGTATTTGATTGCTTTTGATGAGTGTTTGGGGAAGAAGAGTATTGTAGGGAAGGATCCTAGCTGCAGCTCTTGTTTGGCGAATTGCTTCTGCTCACCGTCTGCTCTGAACTTCCCAACTTTCACTCCACTTCCTGCCAACTTCTCAGCCAATTCAACGTATGACCCTTCCATAGCCTGTACAAATTCAATGTCATTTAGTGATATTTCATAAAACTGGGAACAAATGTGTATTCTACTTTCTATTGTTAACCTTACAAATGATTTTTACCTGGCAGAATTGGCACCAAGGTGCATAAAGAACCACAAGCCAAGGTTCTTTCCTGTTCTCCAGCCTTGCCAAGTTTTCTATACCTGTTCTGTTCAGGTTCACCAAATTTTGGGAGATGAAGATGTCATCAACTGGGGGAGATCCATTTCCATTGCTATTCAGCTGAGAAGCATCACCCTGTTTAAGGTTTCCTTTGTGAAGACCGCATTCTTTGGCCTTGGAATCCTCCCACCACCATCTTCCTTCTCTTTCATGCTGCCCTGGAAGGACAGGCCTTGTGCACGGCTCACACCCAATTGA

mRNA sequence

ATGGCAAAGAAAAGCAAGAAGAAAGCATGTGCGAGACACGTGGATGGAGGACATTGGAAAGACACGTTGACGGTGTGGATGGTTCTGAGATTTGATCAACTTGAATATGTGGTGGTGAAAGTGTCCTTAGGGAAAAGCCCACTTTTCTTTTTCTTTCTTTTGAGAAACTTGCTTCACCAACTCATCCTTCTCAACTTTGCACAAACGGCATTCACAAAAGCCATCAACGAATCAACATCCCTCTTCTCAGATGGGTATTTGATTGCTTTTGATGAGTGTTTGGGGAAGAAGAGTATTGTAGGGAAGGATCCTAGCTGCAGCTCTTGTTTGGCGAATTGCTTCTGCTCACCGTCTGCTCTGAACTTCCCAACTTTCACTCCACTTCCTGCCAACTTCTCAGCCAATTCAACAATTGGCACCAAGGTGCATAAAGAACCACAAGCCAAGGTTCACCAAATTTTGGGAGATGAAGATGTCATCAACTGGGGGAGATCCATTTCCATTGCTATTCAGCTGAGAAGCATCACCCTGTTTAAGGTTTCCTTTGTGAAGACCGCATTCTTTGGCCTTGGAATCCTCCCACCACCATCTTCCTTCTCTTTCATGCTGCCCTGGAAGGACAGGCCTTGTGCACGGCTCACACCCAATTGA

Coding sequence (CDS)

ATGGCAAAGAAAAGCAAGAAGAAAGCATGTGCGAGACACGTGGATGGAGGACATTGGAAAGACACGTTGACGGTGTGGATGGTTCTGAGATTTGATCAACTTGAATATGTGGTGGTGAAAGTGTCCTTAGGGAAAAGCCCACTTTTCTTTTTCTTTCTTTTGAGAAACTTGCTTCACCAACTCATCCTTCTCAACTTTGCACAAACGGCATTCACAAAAGCCATCAACGAATCAACATCCCTCTTCTCAGATGGGTATTTGATTGCTTTTGATGAGTGTTTGGGGAAGAAGAGTATTGTAGGGAAGGATCCTAGCTGCAGCTCTTGTTTGGCGAATTGCTTCTGCTCACCGTCTGCTCTGAACTTCCCAACTTTCACTCCACTTCCTGCCAACTTCTCAGCCAATTCAACAATTGGCACCAAGGTGCATAAAGAACCACAAGCCAAGGTTCACCAAATTTTGGGAGATGAAGATGTCATCAACTGGGGGAGATCCATTTCCATTGCTATTCAGCTGAGAAGCATCACCCTGTTTAAGGTTTCCTTTGTGAAGACCGCATTCTTTGGCCTTGGAATCCTCCCACCACCATCTTCCTTCTCTTTCATGCTGCCCTGGAAGGACAGGCCTTGTGCACGGCTCACACCCAATTGA

Protein sequence

MAKKSKKKACARHVDGGHWKDTLTVWMVLRFDQLEYVVVKVSLGKSPLFFFFLLRNLLHQLILLNFAQTAFTKAINESTSLFSDGYLIAFDECLGKKSIVGKDPSCSSCLANCFCSPSALNFPTFTPLPANFSANSTIGTKVHKEPQAKVHQILGDEDVINWGRSISIAIQLRSITLFKVSFVKTAFFGLGILPPPSSFSFMLPWKDRPCARLTPN
Homology
[Close]
BLAST of Lsi02G005950 vs. ExPASy TrEMBL
Match: A0A396JQG3 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr1g0189061 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 0 

Query: 70  AFTKAINESTSLFSDGYLIAFDECLGKKSIVGKDPSCSSCLANCFCSPSALNFPTFTPLP 129
           AFT AINESTSLFS+GYLI+ +ECLGK+   G+    SS  A+ F SPSALNF TFTP P
Sbjct: 18  AFTNAINESTSLFSEGYLISREECLGKEEYCGEASQPSSLFAHSFPSPSALNFLTFTPDP 77

Query: 130 ANFSANSTIGTKV 143
             FSA ST  + +
Sbjct: 78  TKFSAKSTYDSSI 90

[Close]
BLAST of Lsi02G005950 vs. NCBI nr
Match: RHN80509.1 (hypothetical protein MtrunA17_Chr1g0189061 [Medicago truncatula])

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-12
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 0 

Query: 70  AFTKAINESTSLFSDGYLIAFDECLGKKSIVGKDPSCSSCLANCFCSPSALNFPTFTPLP 129
           AFT AINESTSLFS+GYLI+ +ECLGK+   G+    SS  A+ F SPSALNF TFTP P
Sbjct: 18  AFTNAINESTSLFSEGYLISREECLGKEEYCGEASQPSSLFAHSFPSPSALNFLTFTPDP 77

Query: 130 ANFSANSTIGTKV 143
             FSA ST  + +
Sbjct: 78  TKFSAKSTYDSSI 90

The following BLAST results are available for this feature:
BLAST of Lsi02G005950 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi02G005950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A396JQG31.1e-1260.27Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr1g0189061 ... [more]
BLAST of Lsi02G005950 vs. NCBI nr
Match NameE-valueIdentityDescription
RHN80509.12.3e-1260.27hypothetical protein MtrunA17_Chr1g0189061 [Medicago truncatula][more]
BLAST of Lsi02G005950 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G005950.1Lsi02G005950.1mRNA