Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTTTGGCTTTGAAATTTCTCTGGCTGGTGGTTCTGTGTGCACTTATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTTCAGTTCTTTCCTGGATACGGCGGTGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGTGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGTGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGGGGCGGCGGAGGGTTTGGTGGAGGCGGTGGCGGTGGCATTTTAGGTGGTGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA
mRNA sequence
ATGGGTTCTTTGGCTTTGAAATTTCTCTGGCTGGTGGTTCTGTGTGCACTTATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTTCAGTTCTTTCCTGGATACGGCGGTGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGTGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGTGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGGGGCGGCGGAGGGTTTGGTGGAGGCGGTGGCGGTGGCATTTTAGGTGGTGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA
Coding sequence (CDS)
ATGGGTTCTTTGGCTTTGAAATTTCTCTGGCTGGTGGTTCTGTGTGCACTTATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTTCAGTTCTTTCCTGGATACGGCGGTGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGTGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGTGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGGGGCGGCGGAGGGTTTGGTGGAGGCGGTGGCGGTGGCATTTTAGGTGGTGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA
Protein sequence
MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGLP
Homology
BLAST of Lsi02G005890 vs. ExPASy TrEMBL
Match:
A0A0A0LS00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062340 PE=4 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 4.5e-35
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 0
Query: 1 MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
MGS A K+LWLVVLCALIWASEPRKLVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1 MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60
Query: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL
Sbjct: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
Query: 121 P 122
P
Sbjct: 121 P 121
BLAST of Lsi02G005890 vs. ExPASy TrEMBL
Match:
A0A5D3BMG3 (Glycine-rich cell wall structural protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005650 PE=4 SV=1)
HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0
Query: 1 MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
MGSLA K+LWLVVLCALI ASEPR+LVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1 MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60
Query: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG GGGFGGGL
Sbjct: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120
Query: 121 P 122
P
Sbjct: 121 P 121
BLAST of Lsi02G005890 vs. ExPASy TrEMBL
Match:
E5GC63 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0
Query: 1 MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
MGSLA K+LWLVVLCALI ASEPR+LVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1 MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60
Query: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG GGGFGGGL
Sbjct: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120
Query: 121 P 122
P
Sbjct: 121 P 121
BLAST of Lsi02G005890 vs. ExPASy TrEMBL
Match:
A0A1S3BEW4 (glycine-rich cell wall structural protein OS=Cucumis melo OX=3656 GN=LOC103489125 PE=4 SV=1)
HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0
Query: 1 MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
MGSLA K+LWLVVLCALI ASEPR+LVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1 MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60
Query: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG GGGFGGGL
Sbjct: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120
Query: 121 P 122
P
Sbjct: 121 P 121
BLAST of Lsi02G005890 vs. ExPASy TrEMBL
Match:
A0A6J1CF04 (glycine-rich protein 5-like OS=Momordica charantia OX=3673 GN=LOC111010881 PE=4 SV=1)
HSP 1 Score: 120.9 bits (302), Expect = 3.6e-24
Identity = 103/123 (83.74%), Postives = 112/123 (91.06%), Query Frame = 0
Query: 3 SLALKFLWLVVLCALIWASEPRKLVITNGGEI----ESEKTVAFQFFPGYGGGLGGGGGF 62
+LA K LWLV+L ALI ASEPRK ++ NGG+I E+EKT+ FQFFPG+GGGLGGGGGF
Sbjct: 5 ALASKVLWLVLLGALICASEPRK-IVRNGGDIKNENENEKTLPFQFFPGFGGGLGGGGGF 64
Query: 63 GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGG 122
GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG+GGGFGG
Sbjct: 65 GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGSGGGFGG 124
BLAST of Lsi02G005890 vs. NCBI nr
Match:
XP_011648421.1 (glycine-rich cell wall structural protein [Cucumis sativus] >KGN64508.1 hypothetical protein Csa_013856 [Cucumis sativus])
HSP 1 Score: 157.1 bits (396), Expect = 9.3e-35
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 0
Query: 1 MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
MGS A K+LWLVVLCALIWASEPRKLVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1 MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60
Query: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL
Sbjct: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
Query: 121 P 122
P
Sbjct: 121 P 121
BLAST of Lsi02G005890 vs. NCBI nr
Match:
XP_038895952.1 (glycine-rich cell wall structural protein-like [Benincasa hispida])
HSP 1 Score: 154.8 bits (390), Expect = 4.6e-34
Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 0
Query: 1 MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
MGSLA KFLWLVVLCALIWASEPRKLVITNGGEIESEKT+AFQFFPG+GGGLGGGGG+GG
Sbjct: 1 MGSLAFKFLWLVVLCALIWASEPRKLVITNGGEIESEKTLAFQFFPGFGGGLGGGGGYGG 60
Query: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGF--GGGGGGGILGGGAGGGAGGGFGG 120
GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGF GGGGGGGILGGGAGGGAGGGFGG
Sbjct: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGGGILGGGAGGGAGGGFGG 120
Query: 121 GLP 122
GLP
Sbjct: 121 GLP 123
BLAST of Lsi02G005890 vs. NCBI nr
Match:
XP_008446362.1 (PREDICTED: glycine-rich cell wall structural protein [Cucumis melo] >ADN34062.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0056845.1 glycine-rich cell wall structural protein [Cucumis melo var. makuwa] >TYJ99348.1 glycine-rich cell wall structural protein [Cucumis melo var. makuwa])
HSP 1 Score: 151.8 bits (382), Expect = 3.9e-33
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0
Query: 1 MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
MGSLA K+LWLVVLCALI ASEPR+LVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1 MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60
Query: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG GGGFGGGL
Sbjct: 61 GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120
Query: 121 P 122
P
Sbjct: 121 P 121
BLAST of Lsi02G005890 vs. NCBI nr
Match:
XP_022140151.1 (glycine-rich protein 5-like [Momordica charantia])
HSP 1 Score: 120.9 bits (302), Expect = 7.4e-24
Identity = 103/123 (83.74%), Postives = 112/123 (91.06%), Query Frame = 0
Query: 3 SLALKFLWLVVLCALIWASEPRKLVITNGGEI----ESEKTVAFQFFPGYGGGLGGGGGF 62
+LA K LWLV+L ALI ASEPRK ++ NGG+I E+EKT+ FQFFPG+GGGLGGGGGF
Sbjct: 5 ALASKVLWLVLLGALICASEPRK-IVRNGGDIKNENENEKTLPFQFFPGFGGGLGGGGGF 64
Query: 63 GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGG 122
GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG+GGGFGG
Sbjct: 65 GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGSGGGFGG 124
BLAST of Lsi02G005890 vs. NCBI nr
Match:
XP_022994117.1 (glycine-rich protein 5 [Cucurbita maxima])
HSP 1 Score: 115.9 bits (289), Expect = 2.4e-22
Identity = 106/124 (85.48%), Postives = 109/124 (87.90%), Query Frame = 0
Query: 1 MGS-LALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFG 60
MGS LALKFLWL+VL ALI ASEPR+LV T GG SEKT FQFFPGYGGGLGGGGGFG
Sbjct: 1 MGSFLALKFLWLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
Query: 61 GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGG--GGGILGGGAGGGAGGGFG 120
GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGG G G+LGGGAGGGAGGGFG
Sbjct: 61 GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFG 120
Query: 121 GGLP 122
GGLP
Sbjct: 121 GGLP 123
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LS00 | 4.5e-35 | 95.87 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062340 PE=4 SV=1 | [more] |
A0A5D3BMG3 | 1.9e-33 | 94.21 | Glycine-rich cell wall structural protein OS=Cucumis melo var. makuwa OX=1194695... | [more] |
E5GC63 | 1.9e-33 | 94.21 | Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
A0A1S3BEW4 | 1.9e-33 | 94.21 | glycine-rich cell wall structural protein OS=Cucumis melo OX=3656 GN=LOC10348912... | [more] |
A0A6J1CF04 | 3.6e-24 | 83.74 | glycine-rich protein 5-like OS=Momordica charantia OX=3673 GN=LOC111010881 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |
XP_011648421.1 | 9.3e-35 | 95.87 | glycine-rich cell wall structural protein [Cucumis sativus] >KGN64508.1 hypothet... | [more] |
XP_038895952.1 | 4.6e-34 | 95.12 | glycine-rich cell wall structural protein-like [Benincasa hispida] | [more] |
XP_008446362.1 | 3.9e-33 | 94.21 | PREDICTED: glycine-rich cell wall structural protein [Cucumis melo] >ADN34062.1 ... | [more] |
XP_022140151.1 | 7.4e-24 | 83.74 | glycine-rich protein 5-like [Momordica charantia] | [more] |
XP_022994117.1 | 2.4e-22 | 85.48 | glycine-rich protein 5 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |