Lsi02G005890 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G005890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionglycine-rich protein 5-like
Locationchr02: 5253110 .. 5253475 (-)
RNA-Seq ExpressionLsi02G005890
SyntenyLsi02G005890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTTTGGCTTTGAAATTTCTCTGGCTGGTGGTTCTGTGTGCACTTATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTTCAGTTCTTTCCTGGATACGGCGGTGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGTGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGTGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGGGGCGGCGGAGGGTTTGGTGGAGGCGGTGGCGGTGGCATTTTAGGTGGTGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA

mRNA sequence

ATGGGTTCTTTGGCTTTGAAATTTCTCTGGCTGGTGGTTCTGTGTGCACTTATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTTCAGTTCTTTCCTGGATACGGCGGTGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGTGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGTGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGGGGCGGCGGAGGGTTTGGTGGAGGCGGTGGCGGTGGCATTTTAGGTGGTGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA

Coding sequence (CDS)

ATGGGTTCTTTGGCTTTGAAATTTCTCTGGCTGGTGGTTCTGTGTGCACTTATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTTCAGTTCTTTCCTGGATACGGCGGTGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGTGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGTGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGGGGCGGCGGAGGGTTTGGTGGAGGCGGTGGCGGTGGCATTTTAGGTGGTGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA

Protein sequence

MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGLP
Homology
BLAST of Lsi02G005890 vs. ExPASy TrEMBL
Match: A0A0A0LS00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062340 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.5e-35
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 0

Query: 1   MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGS A K+LWLVVLCALIWASEPRKLVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of Lsi02G005890 vs. ExPASy TrEMBL
Match: A0A5D3BMG3 (Glycine-rich cell wall structural protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005650 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0

Query: 1   MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGSLA K+LWLVVLCALI ASEPR+LVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG GGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of Lsi02G005890 vs. ExPASy TrEMBL
Match: E5GC63 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0

Query: 1   MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGSLA K+LWLVVLCALI ASEPR+LVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG GGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of Lsi02G005890 vs. ExPASy TrEMBL
Match: A0A1S3BEW4 (glycine-rich cell wall structural protein OS=Cucumis melo OX=3656 GN=LOC103489125 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0

Query: 1   MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGSLA K+LWLVVLCALI ASEPR+LVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG GGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of Lsi02G005890 vs. ExPASy TrEMBL
Match: A0A6J1CF04 (glycine-rich protein 5-like OS=Momordica charantia OX=3673 GN=LOC111010881 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.6e-24
Identity = 103/123 (83.74%), Postives = 112/123 (91.06%), Query Frame = 0

Query: 3   SLALKFLWLVVLCALIWASEPRKLVITNGGEI----ESEKTVAFQFFPGYGGGLGGGGGF 62
           +LA K LWLV+L ALI ASEPRK ++ NGG+I    E+EKT+ FQFFPG+GGGLGGGGGF
Sbjct: 5   ALASKVLWLVLLGALICASEPRK-IVRNGGDIKNENENEKTLPFQFFPGFGGGLGGGGGF 64

Query: 63  GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGG 122
           GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG+GGGFGG
Sbjct: 65  GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGSGGGFGG 124

BLAST of Lsi02G005890 vs. NCBI nr
Match: XP_011648421.1 (glycine-rich cell wall structural protein [Cucumis sativus] >KGN64508.1 hypothetical protein Csa_013856 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 9.3e-35
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 0

Query: 1   MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGS A K+LWLVVLCALIWASEPRKLVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of Lsi02G005890 vs. NCBI nr
Match: XP_038895952.1 (glycine-rich cell wall structural protein-like [Benincasa hispida])

HSP 1 Score: 154.8 bits (390), Expect = 4.6e-34
Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 0

Query: 1   MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGSLA KFLWLVVLCALIWASEPRKLVITNGGEIESEKT+AFQFFPG+GGGLGGGGG+GG
Sbjct: 1   MGSLAFKFLWLVVLCALIWASEPRKLVITNGGEIESEKTLAFQFFPGFGGGLGGGGGYGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGF--GGGGGGGILGGGAGGGAGGGFGG 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGF  GGGGGGGILGGGAGGGAGGGFGG
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGGGILGGGAGGGAGGGFGG 120

Query: 121 GLP 122
           GLP
Sbjct: 121 GLP 123

BLAST of Lsi02G005890 vs. NCBI nr
Match: XP_008446362.1 (PREDICTED: glycine-rich cell wall structural protein [Cucumis melo] >ADN34062.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0056845.1 glycine-rich cell wall structural protein [Cucumis melo var. makuwa] >TYJ99348.1 glycine-rich cell wall structural protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 3.9e-33
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0

Query: 1   MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGSLA K+LWLVVLCALI ASEPR+LVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG GGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

BLAST of Lsi02G005890 vs. NCBI nr
Match: XP_022140151.1 (glycine-rich protein 5-like [Momordica charantia])

HSP 1 Score: 120.9 bits (302), Expect = 7.4e-24
Identity = 103/123 (83.74%), Postives = 112/123 (91.06%), Query Frame = 0

Query: 3   SLALKFLWLVVLCALIWASEPRKLVITNGGEI----ESEKTVAFQFFPGYGGGLGGGGGF 62
           +LA K LWLV+L ALI ASEPRK ++ NGG+I    E+EKT+ FQFFPG+GGGLGGGGGF
Sbjct: 5   ALASKVLWLVLLGALICASEPRK-IVRNGGDIKNENENEKTLPFQFFPGFGGGLGGGGGF 64

Query: 63  GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGG 122
           GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG+GGGFGG
Sbjct: 65  GGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGSGGGFGG 124

BLAST of Lsi02G005890 vs. NCBI nr
Match: XP_022994117.1 (glycine-rich protein 5 [Cucurbita maxima])

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-22
Identity = 106/124 (85.48%), Postives = 109/124 (87.90%), Query Frame = 0

Query: 1   MGS-LALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFG 60
           MGS LALKFLWL+VL ALI ASEPR+LV T GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGSFLALKFLWLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGG--GGGILGGGAGGGAGGGFG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGG  G G+LGGGAGGGAGGGFG
Sbjct: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFG 120

Query: 121 GGLP 122
           GGLP
Sbjct: 121 GGLP 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LS004.5e-3595.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062340 PE=4 SV=1[more]
A0A5D3BMG31.9e-3394.21Glycine-rich cell wall structural protein OS=Cucumis melo var. makuwa OX=1194695... [more]
E5GC631.9e-3394.21Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A1S3BEW41.9e-3394.21glycine-rich cell wall structural protein OS=Cucumis melo OX=3656 GN=LOC10348912... [more]
A0A6J1CF043.6e-2483.74glycine-rich protein 5-like OS=Momordica charantia OX=3673 GN=LOC111010881 PE=4 ... [more]
Match NameE-valueIdentityDescription
XP_011648421.19.3e-3595.87glycine-rich cell wall structural protein [Cucumis sativus] >KGN64508.1 hypothet... [more]
XP_038895952.14.6e-3495.12glycine-rich cell wall structural protein-like [Benincasa hispida][more]
XP_008446362.13.9e-3394.21PREDICTED: glycine-rich cell wall structural protein [Cucumis melo] >ADN34062.1 ... [more]
XP_022140151.17.4e-2483.74glycine-rich protein 5-like [Momordica charantia][more]
XP_022994117.12.4e-2285.48glycine-rich protein 5 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G005890.1Lsi02G005890.1mRNA