Lsi02G005400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G005400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein UNUSUAL FLORAL ORGANS-like
Location	chr02: 4692160 .. 4692618 (+)
RNA-Seq Expression	Lsi02G005400
Synteny	Lsi02G005400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTCAGTCACCATATGGATATGAGTCTTCACTCCTCCATGAGTAGTTCTCTTCCCTTTGGCTATAACATTATTTCCGGTTCAAATTGCGGAATTATTTCCACTTGTTCCACTACCACTTCTTCTTCGAGTAATAATGTCGCACTACTAACGACGGGCCCTAGAATGGATAGCAGAATATGGAGTAAACTGCCGCAGAGGATTCTGGATCGGGTGGTGGCGTTTCTTCCGCCGCCGGCCTTTTTTCGTGCTCGTTGTGTTTGTAAGAGATGGTACGGCCTTCTATTTTACGCTAGCTTTCTGGAATTGTACCTCCAAATTTCTCCACATCGCCGCCATTGGTTCCTGTTCTTCAAGCTCAAAGGCGTTTCCAGTCATATTTACAGGAATAATAATAACTCACCACTTGCTGGACCCGACCACTCCAGACCCACCTACGAAGGGTATATGCCTTAA

mRNA sequence

ATGAATTTCAGTCACCATATGGATATGAGTCTTCACTCCTCCATGAGTAGTTCTCTTCCCTTTGGCTATAACATTATTTCCGGTTCAAATTGCGGAATTATTTCCACTTGTTCCACTACCACTTCTTCTTCGAGTAATAATGTCGCACTACTAACGACGGGCCCTAGAATGGATAGCAGAATATGGAGTAAACTGCCGCAGAGGATTCTGGATCGGGTGGTGGCGTTTCTTCCGCCGCCGGCCTTTTTTCGTGCTCGTTGTGTTTGTAAGAGATGGTACGGCCTTCTATTTTACGCTAGCTTTCTGGAATTGTACCTCCAAATTTCTCCACATCGCCGCCATTGGTTCCTGTTCTTCAAGCTCAAAGGCGTTTCCAGTCATATTTACAGGAATAATAATAACTCACCACTTGCTGGACCCGACCACTCCAGACCCACCTACGAAGGGTATATGCCTTAA

Coding sequence (CDS)

ATGAATTTCAGTCACCATATGGATATGAGTCTTCACTCCTCCATGAGTAGTTCTCTTCCCTTTGGCTATAACATTATTTCCGGTTCAAATTGCGGAATTATTTCCACTTGTTCCACTACCACTTCTTCTTCGAGTAATAATGTCGCACTACTAACGACGGGCCCTAGAATGGATAGCAGAATATGGAGTAAACTGCCGCAGAGGATTCTGGATCGGGTGGTGGCGTTTCTTCCGCCGCCGGCCTTTTTTCGTGCTCGTTGTGTTTGTAAGAGATGGTACGGCCTTCTATTTTACGCTAGCTTTCTGGAATTGTACCTCCAAATTTCTCCACATCGCCGCCATTGGTTCCTGTTCTTCAAGCTCAAAGGCGTTTCCAGTCATATTTACAGGAATAATAATAACTCACCACTTGCTGGACCCGACCACTCCAGACCCACCTACGAAGGGTATATGCCTTAA

Protein sequence

MNFSHHMDMSLHSSMSSSLPFGYNIISGSNCGIISTCSTTTSSSSNNVALLTTGPRMDSRIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFFKLKGVSSHIYRNNNNSPLAGPDHSRPTYEGYMP

Homology

[Close]

BLAST of Lsi02G005400 vs. ExPASy Swiss-Prot
Match: Q39090 (Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana OX=3702 GN=UFO PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 3.5e-26
Identity = 67/120 (55.83%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 16  SSSLPFGYNIISGSNCGIISTCSTTTSSSSNNVALLTTGPRMDSRIWSKLPQRILDRVVA 75
           S +LPF Y   S SN    +T STTT SSS        G  MD RIWSKLP  +LDRV+A
Sbjct: 11  SLTLPFSYTFTSSSNSS--TTTSTTTDSSS--------GQWMDGRIWSKLPPPLLDRVIA 70

Query: 76  FLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFFKLKGVSSHIYRNNNNS 135
           FLPPPAFFR RCVCKR+Y LLF  +FLE YLQ+ P R + FLFFK K + S+IY+    +
Sbjct: 71  FLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNCFLFFKHKTLKSYIYKRGGTN 120

[Close]

BLAST of Lsi02G005400 vs. ExPASy Swiss-Prot
Match: B8B183 (Protein ABERRANT PANICLE ORGANIZATION 1 OS=Oryza sativa subsp. indica OX=39946 GN=APO1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.4e-11
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 57  MDSRIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPH 112
           MD R+W +LPQ ++DRV+A LP P+F R R  C+R+Y LLF + FL  +L +SPH
Sbjct: 23  MDPRVWRRLPQPLVDRVLACLPTPSFLRLRAACRRFYHLLFSSPFLHSHLLLSPH 77

[Close]

BLAST of Lsi02G005400 vs. ExPASy Swiss-Prot
Match: Q655Y0 (Protein ABERRANT PANICLE ORGANIZATION 1 OS=Oryza sativa subsp. japonica OX=39947 GN=APO1 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 57  MDSRIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPH 112
           MD R+W +LPQ ++DR++A LP P+F R R  C+R+Y LLF + FL  +L +SPH
Sbjct: 23  MDPRVWRRLPQPLVDRILACLPTPSFLRLRAACRRFYHLLFSSPFLHSHLLLSPH 77

[Close]

BLAST of Lsi02G005400 vs. ExPASy Swiss-Prot
Match: Q9LFV5 (F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana OX=3702 GN=At5g15710 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-05
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 56  RMDSRIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHW 115
           +M+  IW+ LP+ +L+ ++A +PP   FR R VCK+W  +L   SFL+ +  +S H    
Sbjct: 98  QMEDGIWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCL 157

Query: 116 FLFFK 121
             F+K
Sbjct: 158 LTFWK 162

[Close]

BLAST of Lsi02G005400 vs. ExPASy Swiss-Prot
Match: Q9FZK1 (F-box only protein 6 OS=Arabidopsis thaliana OX=3702 GN=FBX6 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.7e-05
Identity = 24/70 (34.29%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 57  MDSRIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWF 116
           MD  IW + PQ + + VV+ LP   FF+ R VC++W  L+   SF   + ++ P    WF
Sbjct: 112 MDQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTEL-PQTIPWF 171

Query: 117 LFFKLKGVSS 127
                + V+S
Sbjct: 172 YTITHENVNS 180

[Close]

BLAST of Lsi02G005400 vs. ExPASy TrEMBL
Match: A0A0A0LU03 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G056950 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.9e-71
Identity = 134/151 (88.74%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 1   MNFSHHMDMSLHSSMSSSLPFGYNIISGSNCGIISTCSTTTSSSSNNVALLTTGPRMDSR 60
           MNFSHHMDMSLHSSM+ ++PF YNIIS SNCGIIS     T+S++NNVALLTTGPRMDSR
Sbjct: 1   MNFSHHMDMSLHSSMNPTIPFSYNIISSSNCGIIS-----TTSNNNNVALLTTGPRMDSR 60

Query: 61  IWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFFK 120
           IWSKLPQRILDR+VAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISP+RRHWFLFFK
Sbjct: 61  IWSKLPQRILDRIVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPYRRHWFLFFK 120

Query: 121 LKGVSSHIYRNNNNSPLAGPDHSRPTYEGYM 152
           LKGVSSHIYRNNNNSPLAGPDHSRPTYEGY+
Sbjct: 121 LKGVSSHIYRNNNNSPLAGPDHSRPTYEGYL 146

[Close]

BLAST of Lsi02G005400 vs. ExPASy TrEMBL
Match: A0A5A7UJK7 (Protein UNUSUAL FLORAL ORGANS-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G002150 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.1e-68
Identity = 132/152 (86.84%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MNFSHHMDMSLHSSMSSSLPFGYNIISGSNCGIISTCSTTTSSSSNNVALL-TTGPRMDS 60
           MNFSHHMDMSLH SM+ ++PF YNII  SNCGIIST      +S+NNVALL TTGPRMD 
Sbjct: 1   MNFSHHMDMSLHPSMNPTIPFSYNIIPSSNCGIIST------TSNNNVALLTTTGPRMDC 60

Query: 61  RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFF 120
           RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISP+RRHWFLFF
Sbjct: 61  RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPYRRHWFLFF 120

Query: 121 KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGYM 152
           KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGY+
Sbjct: 121 KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGYL 146

[Close]

BLAST of Lsi02G005400 vs. ExPASy TrEMBL
Match: A0A5D3BJJ6 (Protein UNUSUAL FLORAL ORGANS-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005100 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.6e-68
Identity = 132/152 (86.84%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MNFSHHMDMSLHSSMSSSLPFGYNIISGSNCGIISTCSTTTSSSSNNVALL-TTGPRMDS 60
           MNFSHHMDMSLH SM+ ++PF YNII  SNCGIIST      +S+NNVALL TTGPRMD 
Sbjct: 1   MNFSHHMDMSLHPSMNPTIPFTYNIIPSSNCGIIST------TSNNNVALLTTTGPRMDC 60

Query: 61  RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFF 120
           RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISP+RRHWFLFF
Sbjct: 61  RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPYRRHWFLFF 120

Query: 121 KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGYM 152
           KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGY+
Sbjct: 121 KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGYL 146

[Close]

BLAST of Lsi02G005400 vs. ExPASy TrEMBL
Match: A0A1S3B0Y7 (LOW QUALITY PROTEIN: protein UNUSUAL FLORAL ORGANS-like OS=Cucumis melo OX=3656 GN=LOC103484828 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.6e-68
Identity = 132/152 (86.84%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MNFSHHMDMSLHSSMSSSLPFGYNIISGSNCGIISTCSTTTSSSSNNVALL-TTGPRMDS 60
           MNFSHHMDMSLH SM+ ++PF YNII  SNCGIIST      +S+NNVALL TTGPRMD 
Sbjct: 1   MNFSHHMDMSLHPSMNPTIPFTYNIIPSSNCGIIST------TSNNNVALLTTTGPRMDC 60

Query: 61  RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFF 120
           RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISP+RRHWFLFF
Sbjct: 61  RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPYRRHWFLFF 120

Query: 121 KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGYM 152
           KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGY+
Sbjct: 121 KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGYL 146

[Close]

BLAST of Lsi02G005400 vs. ExPASy TrEMBL
Match: A0A6J1KQB0 (protein UNUSUAL FLORAL ORGANS-like OS=Cucurbita maxima OX=3661 GN=LOC111495523 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.7e-53
Identity = 112/146 (76.71%), Postives = 127/146 (86.99%), Query Frame = 0


Query: 7   MDMSLHSSMSSSLPFGYNIISGSNCGIISTCST-TTSSSSNNVALLTTGPRMDSRIWSKL 66
           MD++LHSSM   LPF YN  S SNC I+S CST ++SSSS++ A L +GP MD+RIWSKL
Sbjct: 1   MDITLHSSM--PLPFAYN-FSPSNCAILSGCSTASSSSSSSSNAGLLSGPIMDTRIWSKL 60

Query: 67  PQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFFKLKGVS 126
           PQ++LDRVVAFLPPPAFFRARCVCKRWYGLLFYA+FLE YLQ+SPHRRHWFLFFKLKG+S
Sbjct: 61  PQKLLDRVVAFLPPPAFFRARCVCKRWYGLLFYATFLETYLQLSPHRRHWFLFFKLKGLS 120

Query: 127 SHIYRNNNNSPLAGPDHSRPTYEGYM 152
           SHIYRNN NSPL GP  SRPTYEGY+
Sbjct: 121 SHIYRNNTNSPLGGP-ASRPTYEGYL 142

[Close]

BLAST of Lsi02G005400 vs. NCBI nr
Match: XP_038876989.1 (protein UNUSUAL FLORAL ORGANS [Benincasa hispida])

HSP 1 Score: 283.9 bits (725), Expect = 8.3e-73
Identity = 137/151 (90.73%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 1   MNFSHHMDMSLHSSMSSSLPFGYNIISGSNCGIISTCSTTTSSSSNNVALLTTGPRMDSR 60
           MNF+HHMDMSLHSSMS++LPF YNIISGSNCGIISTCST     SNNV LLT GPRMDSR
Sbjct: 1   MNFTHHMDMSLHSSMSTTLPFSYNIISGSNCGIISTCST-----SNNVGLLTAGPRMDSR 60

Query: 61  IWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFFK 120
           IWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQ+SPHRRHWFLFFK
Sbjct: 61  IWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQLSPHRRHWFLFFK 120

Query: 121 LKGVSSHIYRNNNNSPLAGPDHSRPTYEGYM 152
           LKGVSSHIYRNN+NSPLAGPDHSRPTYEGY+
Sbjct: 121 LKGVSSHIYRNNSNSPLAGPDHSRPTYEGYL 146

[Close]

BLAST of Lsi02G005400 vs. NCBI nr
Match: XP_004145206.2 (protein UNUSUAL FLORAL ORGANS [Cucumis sativus] >KGN64459.1 hypothetical protein Csa_013583 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 5.9e-71
Identity = 134/151 (88.74%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 1   MNFSHHMDMSLHSSMSSSLPFGYNIISGSNCGIISTCSTTTSSSSNNVALLTTGPRMDSR 60
           MNFSHHMDMSLHSSM+ ++PF YNIIS SNCGIIS     T+S++NNVALLTTGPRMDSR
Sbjct: 1   MNFSHHMDMSLHSSMNPTIPFSYNIISSSNCGIIS-----TTSNNNNVALLTTGPRMDSR 60

Query: 61  IWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFFK 120
           IWSKLPQRILDR+VAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISP+RRHWFLFFK
Sbjct: 61  IWSKLPQRILDRIVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPYRRHWFLFFK 120

Query: 121 LKGVSSHIYRNNNNSPLAGPDHSRPTYEGYM 152
           LKGVSSHIYRNNNNSPLAGPDHSRPTYEGY+
Sbjct: 121 LKGVSSHIYRNNNNSPLAGPDHSRPTYEGYL 146

[Close]

BLAST of Lsi02G005400 vs. NCBI nr
Match: KAA0055370.1 (protein UNUSUAL FLORAL ORGANS-like [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-67
Identity = 132/152 (86.84%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MNFSHHMDMSLHSSMSSSLPFGYNIISGSNCGIISTCSTTTSSSSNNVALL-TTGPRMDS 60
           MNFSHHMDMSLH SM+ ++PF YNII  SNCGIIST      +S+NNVALL TTGPRMD 
Sbjct: 1   MNFSHHMDMSLHPSMNPTIPFSYNIIPSSNCGIIST------TSNNNVALLTTTGPRMDC 60

Query: 61  RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFF 120
           RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISP+RRHWFLFF
Sbjct: 61  RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPYRRHWFLFF 120

Query: 121 KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGYM 152
           KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGY+
Sbjct: 121 KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGYL 146

[Close]

BLAST of Lsi02G005400 vs. NCBI nr
Match: XP_008440352.1 (PREDICTED: LOW QUALITY PROTEIN: protein UNUSUAL FLORAL ORGANS-like [Cucumis melo] >TYJ99297.1 protein UNUSUAL FLORAL ORGANS-like [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 132/152 (86.84%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MNFSHHMDMSLHSSMSSSLPFGYNIISGSNCGIISTCSTTTSSSSNNVALL-TTGPRMDS 60
           MNFSHHMDMSLH SM+ ++PF YNII  SNCGIIST      +S+NNVALL TTGPRMD 
Sbjct: 1   MNFSHHMDMSLHPSMNPTIPFTYNIIPSSNCGIIST------TSNNNVALLTTTGPRMDC 60

Query: 61  RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFF 120
           RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISP+RRHWFLFF
Sbjct: 61  RIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPYRRHWFLFF 120

Query: 121 KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGYM 152
           KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGY+
Sbjct: 121 KLKGVSSHIYRNNNNSPLAGPDHSRPTYEGYL 146

[Close]

BLAST of Lsi02G005400 vs. NCBI nr
Match: KAG7019775.1 (Protein UNUSUAL FLORAL ORGANS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.9 bits (572), Expect = 4.6e-55
Identity = 117/154 (75.97%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MNFSHHMDMSLHSSMSSSLPFGYNIISGSNCGII---STCSTTTSSSSNNVALLTTGPRM 60
           MNFSH MD++LHSSM   LPF YN  S SNC I+   ST S+++SSSS+N  LL +GP M
Sbjct: 1   MNFSHSMDITLHSSM--PLPFAYN-FSPSNCAILSASSTASSSSSSSSSNAGLL-SGPIM 60

Query: 61  DSRIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFL 120
           D+RIWSKLPQ++LDRVVAFLPPPAFFRARCVCKRWYGLLFYA+FLE YLQ+SPHRRHWFL
Sbjct: 61  DTRIWSKLPQKLLDRVVAFLPPPAFFRARCVCKRWYGLLFYATFLETYLQLSPHRRHWFL 120

Query: 121 FFKLKGVSSHIYRNNNNSPLAGPDHSRPTYEGYM 152
           FFKLKG+SSHIYRNN NSPL GP  SRPTYEGY+
Sbjct: 121 FFKLKGLSSHIYRNNTNSPLGGP-ASRPTYEGYL 149

[Close]

BLAST of Lsi02G005400 vs. TAIR 10
Match: AT1G30950.1 (F-box family protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-27
Identity = 67/120 (55.83%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 16  SSSLPFGYNIISGSNCGIISTCSTTTSSSSNNVALLTTGPRMDSRIWSKLPQRILDRVVA 75
           S +LPF Y   S SN    +T STTT SSS        G  MD RIWSKLP  +LDRV+A
Sbjct: 11  SLTLPFSYTFTSSSNSS--TTTSTTTDSSS--------GQWMDGRIWSKLPPPLLDRVIA 70

Query: 76  FLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFFKLKGVSSHIYRNNNNS 135
           FLPPPAFFR RCVCKR+Y LLF  +FLE YLQ+ P R + FLFFK K + S+IY+    +
Sbjct: 71  FLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNCFLFFKHKTLKSYIYKRGGTN 120

[Close]

BLAST of Lsi02G005400 vs. TAIR 10
Match: AT5G15710.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 56  RMDSRIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHW 115
           +M+  IW+ LP+ +L+ ++A +PP   FR R VCK+W  +L   SFL+ +  +S H    
Sbjct: 98  QMEDGIWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCL 157

Query: 116 FLFFK 121
             F+K
Sbjct: 158 LTFWK 162

[Close]

BLAST of Lsi02G005400 vs. TAIR 10
Match: AT1G27340.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 5.5e-06
Identity = 24/70 (34.29%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 57  MDSRIWSKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWF 116
           MD  IW + PQ + + VV+ LP   FF+ R VC++W  L+   SF   + ++ P    WF
Sbjct: 112 MDQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTEL-PQTIPWF 171

Query: 117 LFFKLKGVSS 127
                + V+S
Sbjct: 172 YTITHENVNS 180

[Close]

BLAST of Lsi02G005400 vs. TAIR 10
Match: AT3G61590.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 6.0e-05
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 63  SKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFF 120
           S LP  +L+R+++FLP  + FRA  VCKRW  ++    FL  +   S  +R W+  F
Sbjct: 41  SLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMF 97

[Close]

BLAST of Lsi02G005400 vs. TAIR 10
Match: AT3G61590.2 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 6.0e-05
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 63  SKLPQRILDRVVAFLPPPAFFRARCVCKRWYGLLFYASFLELYLQISPHRRHWFLFF 120
           S LP  +L+R+++FLP  + FRA  VCKRW  ++    FL  +   S  +R W+  F
Sbjct: 41  SLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMF 97

The following BLAST results are available for this feature:

BLAST of Lsi02G005400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39090	3.5e-26	55.83	Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana OX=3702 GN=UFO PE=1 SV=2	[more]
B8B183	9.4e-11	52.73	Protein ABERRANT PANICLE ORGANIZATION 1 OS=Oryza sativa subsp. indica OX=39946 G...	[more]
Q655Y0	1.2e-10	50.91	Protein ABERRANT PANICLE ORGANIZATION 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q9LFV5	1.5e-05	36.92	F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana OX=3702 GN=At5g1571...	[more]
Q9FZK1	7.7e-05	34.29	F-box only protein 6 OS=Arabidopsis thaliana OX=3702 GN=FBX6 PE=2 SV=1	[more]

BLAST of Lsi02G005400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU03	2.9e-71	88.74	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G056950 PE=4 ...	[more]
A0A5A7UJK7	5.1e-68	86.84	Protein UNUSUAL FLORAL ORGANS-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5D3BJJ6	8.6e-68	86.84	Protein UNUSUAL FLORAL ORGANS-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B0Y7	8.6e-68	86.84	LOW QUALITY PROTEIN: protein UNUSUAL FLORAL ORGANS-like OS=Cucumis melo OX=3656 ...	[more]
A0A6J1KQB0	2.7e-53	76.71	protein UNUSUAL FLORAL ORGANS-like OS=Cucurbita maxima OX=3661 GN=LOC111495523 P...	[more]

BLAST of Lsi02G005400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876989.1	8.3e-73	90.73	protein UNUSUAL FLORAL ORGANS [Benincasa hispida]	[more]
XP_004145206.2	5.9e-71	88.74	protein UNUSUAL FLORAL ORGANS [Cucumis sativus] >KGN64459.1 hypothetical protein...	[more]
KAA0055370.1	1.0e-67	86.84	protein UNUSUAL FLORAL ORGANS-like [Cucumis melo var. makuwa]	[more]
XP_008440352.1	1.8e-67	86.84	PREDICTED: LOW QUALITY PROTEIN: protein UNUSUAL FLORAL ORGANS-like [Cucumis melo...	[more]
KAG7019775.1	4.6e-55	75.97	Protein UNUSUAL FLORAL ORGANS, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of Lsi02G005400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30950.1	2.5e-27	55.83	F-box family protein	[more]
AT5G15710.1	1.1e-06	36.92	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G27340.1	5.5e-06	34.29	Galactose oxidase/kelch repeat superfamily protein	[more]
AT3G61590.1	6.0e-05	38.60	Galactose oxidase/kelch repeat superfamily protein	[more]
AT3G61590.2	6.0e-05	38.60	Galactose oxidase/kelch repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 65..104 e-value: 0.0013 score: 28.0
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 61..93 e-value: 1.3E-5 score: 24.9
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 59..108 score: 10.795695
None	No IPR available	GENE3D	1.20.1280.50		coord: 57..103 e-value: 3.0E-8 score: 35.4
None	No IPR available	PANTHER	PTHR46301:SF2	PROTEIN UNUSUAL FLORAL ORGANS	coord: 62..130
None	No IPR available	PANTHER	PTHR46301	F-BOX/KELCH-REPEAT PROTEIN	coord: 62..130
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 55..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G005400.1	Lsi02G005400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0010074	maintenance of meristem identity
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0042127	regulation of cell population proliferation
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:1901342	regulation of vasculature development
biological_process	GO:0010193	response to ozone
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0000151	ubiquitin ligase complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity