Lsi02G005110 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G005110
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionthylakoid lumenal 17.9 kDa protein, chloroplastic
Locationchr02: 4320657 .. 4322941 (-)
RNA-Seq ExpressionLsi02G005110
SyntenyLsi02G005110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGATTGAGGATAGAACCAAAAATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGAAGAAGAAGAAGAATCAGTACCACTCCCCAGTTTCTCTTCCTTCCATGGCCGCTCTTCAAAATTCAAACCACAAACCCATTTTCCTCTCTCATCTCCTTTCTTTCGCCCTCTCTATAACCCTAAGCTCACCATTTCCTTCTGTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACTACTCCATTTTCTCAATCCAAGGACTTACCAACTGGACTAGAAAACGGGTATGCTCTGAATTTTGTAATTTGAACTGCTTCTGTTCAATTTTGTTACTAGTTTGTAGTTTCTGTCTGCCCTCAATTTGCATTGGTTTTCTGAACTGAATCATTGTCAATGTAGCTAACTTCCTCTGTGGGGTTTCCCCCAAATTTGTTCACCTTAATGTTGCAGGAAAATTATGCCCTGCCCATCAACCAATCCCTCTTGTGTTTCCACAAATCCTAAATCGTCTTCTTTTGCATTCCCTTTAAACATTCCTGAGAATTTCAGTGGGAATCCAATTCAGGTTTTAGTTCTCTGAAAATCGAGCATGATATGTTTGTATGTTCTTCTACAAATTTGGTTTCTCTTGGTGGTGTTGCTTTTCATGTTTCTGCTCTACATTTATTTGCAGAAACTGCAGGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACTCCATATGGTAATTGAACTGAACTTATCAATAGCAGATTTAAACTTTGCATTTCAGATTGATATACATATTTTAATTAGACTGCTGAGATAGAGATGAGAATGGATTCTATTTACCAATTACCACAGTGACCGTTGGCTTATTCTTTTGAATTCAATAGTGCTTTAACATAGATAAAGAAGTAAATCCTTGGTTGAGTTATAACTTTTAAGTTTGATTTTTAAACTCTCAAAAATAGGTAATAGTTCCTTAAAGTTTCATTGTTATATCTTACAAATCCATAGACCTTCAGTAATATTTAATAGTAAGTCCAAGGATCTATTTGGCACAAAGTTGAAAGCTTGTAAACTATGAAGCTCAAAACAAAGTGTCAGTATTAGACTCGTATCAAACATGGATATGTTCGTACATGCTAAAAAACATGTCTGGAAAAGACAATTTTATAATTTCGGACACGACTTTGACACGGCTCGACATGGCTTGTTATGACTCTAGAAAATATTTAACCTACAAATTAGGGGGGAAAATTGATATTCTCTTGTCGTTTGAATCCTTATATATTGGTCCATCCTAAAGTAATAGAATGATATCTTCATCCTCTAATCATAGCCACCTAAATCAACTGAACTTTGTATGTTTTTAGTGAAGTATATTTTTGTTTGATGTTAAATTTACATGTATTTGTCTATAAAGAAGTATTATATATCAACATAGACACATATTTTATATATTTTTTTAAAAATATGTGTCCTTGTGTCCTATCATTTAAGAAATTGGCGTGTAGCTGTGTCCATGTCGTGTTGTGTTCATGTCCGTCCTTCTTATTTCATTGATTTATTCGATATAAAATCAAAAGTTCGAGGGCTTATTTCGTTAAACACTTGTTAAGTTCATAGACCAATTAAATGGAACTTAGATAGTTTAGCAACCTATGTCGATACTTTTTAGATCTCACATGAAAATCTCGAGCCTTACACGTAAAAGAGAGTATGATTATGGCTTATAGAACAAGATGATTAATGATTATGACAGGTCAATATTTAGAAGCTGAGGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAAAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCCTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAGGAAGATTATAGATCAGTTGGATTGGTATTCTCCAACCTTCGATTCCATGGCTGACTAGTACAAACCCTGCTTCTTTCTTTATTCTTTGTTTCTCTTCCCCATCATTTTTACTCAATCTGATTAAACTCATTTTCAGCCGCAAATATTTTTGCCTTAGATTATATATGTATAAAAAAGAATGTTTCAACTTCATTCCTATCTAGAATTATTCTTGTTGATATTTGATGAGTTATTTATACCAACTAATGTTTGGAAATTATGTTTTAAATACTCAAAATCTACAAGAGTTTTAGCTCAAGTTATTGAAGTCGTACTAAGCATAGCCC

mRNA sequence

CCAAGATTGAGGATAGAACCAAAAATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGAAGAAGAAGAAGAATCAGTACCACTCCCCAGTTTCTCTTCCTTCCATGGCCGCTCTTCAAAATTCAAACCACAAACCCATTTTCCTCTCTCATCTCCTTTCTTTCGCCCTCTCTATAACCCTAAGCTCACCATTTCCTTCTGTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACTACTCCATTTTCTCAATCCAAGGACTTACCAACTGGACTAGAAAACGGGAAAATTATGCCCTGCCCATCAACCAATCCCTCTTGTGTTTCCACAAATCCTAAATCGTCTTCTTTTGCATTCCCTTTAAACATTCCTGAGAATTTCAGTGGGAATCCAATTCAGAAACTGCAGGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACTCCATATGGTCAATATTTAGAAGCTGAGGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAAAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCCTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAGGAAGATTATAGATCAGTTGGATTGGTATTCTCCAACCTTCGATTCCATGGCTGACTAGTACAAACCCTGCTTCTTTCTTTATTCTTTGTTTCTCTTCCCCATCATTTTTACTCAATCTGATTAAACTCATTTTCAGCCGCAAATATTTTTGCCTTAGATTATATATGTATAAAAAAGAATGTTTCAACTTCATTCCTATCTAGAATTATTCTTGTTGATATTTGATGAGTTATTTATACCAACTAATGTTTGGAAATTATGTTTTAAATACTCAAAATCTACAAGAGTTTTAGCTCAAGTTATTGAAGTCGTACTAAGCATAGCCC

Coding sequence (CDS)

ATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGAAGAAGAAGAAGAATCAGTACCACTCCCCAGTTTCTCTTCCTTCCATGGCCGCTCTTCAAAATTCAAACCACAAACCCATTTTCCTCTCTCATCTCCTTTCTTTCGCCCTCTCTATAACCCTAAGCTCACCATTTCCTTCTGTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACTACTCCATTTTCTCAATCCAAGGACTTACCAACTGGACTAGAAAACGGGAAAATTATGCCCTGCCCATCAACCAATCCCTCTTGTGTTTCCACAAATCCTAAATCGTCTTCTTTTGCATTCCCTTTAAACATTCCTGAGAATTTCAGTGGGAATCCAATTCAGAAACTGCAGGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACTCCATATGGTCAATATTTAGAAGCTGAGGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAAAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCCTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAGGAAGATTATAGATCAGTTGGATTGGTATTCTCCAACCTTCGATTCCATGGCTGACTAG

Protein sequence

MSSLQFRPPLVSPWKKKKKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD
Homology
BLAST of Lsi02G005110 vs. ExPASy Swiss-Prot
Match: Q9SW33 (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.4e-65
Identity = 132/194 (68.04%), Postives = 160/194 (82.47%), Query Frame = 0

Query: 38  NSNHKPI-FLSHLLSFALSITLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENG 97
           +S   PI  L  L+SFAL+I+L+S  P++AIPSL+S S PL  TTPF+QSK + TGL NG
Sbjct: 34  SSTSPPISLLPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNG 93

Query: 98  KIMPCPSTNPSCVSTNPKSSSFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTP 157
           KI PCPSTNP CVSTNP SSSF+FPL IPE  + +PI+KL+EAI+ TQ+NPK  V+EDTP
Sbjct: 94  KIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTP 153

Query: 158 YGQYLEAEVD-GNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKI 217
           YG+Y+EAEV+ G F RDV+EFLVK DV AYR MATKVT+VYPFTTA GDSKGQEER++K+
Sbjct: 154 YGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKL 213

Query: 218 IDQLDWYSPTFDSM 230
           IDQL WY+PTF+SM
Sbjct: 214 IDQLGWYAPTFESM 224

BLAST of Lsi02G005110 vs. ExPASy TrEMBL
Match: A0A0A0LRK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.1e-117
Identity = 217/232 (93.53%), Postives = 224/232 (96.55%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKK-KKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITLS 60
           MSSLQFRPPLVSPWKKK    KNQYHSPVS+PSM+ LQN+NHKPIFLSHLLSFALSITLS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60

Query: 61  SPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSFA 120
           SPFPS+AIPSLNSLSSPLSPTTPFSQSK+LPTGLENGKIMPCPS NPSCVSTNPKSSSFA
Sbjct: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120

Query: 121 FPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVK 180
           FPLNIP+NFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV+
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180

Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
           GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTFDSM D
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

BLAST of Lsi02G005110 vs. ExPASy TrEMBL
Match: A0A5A7UK02 (Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004760 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 218/233 (93.56%), Postives = 224/233 (96.14%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKK--KKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITL 60
           MSSLQFRP LVSPWKKK     KNQYHSPVS+PSM+ALQN NHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  SSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           +SPFPSVAIPSLNSLSSPLSPTTPFSQSK+LPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIP+NFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTFDSM D
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

BLAST of Lsi02G005110 vs. ExPASy TrEMBL
Match: A0A1S3AZP3 (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484512 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 218/233 (93.56%), Postives = 224/233 (96.14%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKK--KKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITL 60
           MSSLQFRP LVSPWKKK     KNQYHSPVS+PSM+ALQN NHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  SSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           +SPFPSVAIPSLNSLSSPLSPTTPFSQSK+LPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIP+NFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTFDSM D
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

BLAST of Lsi02G005110 vs. ExPASy TrEMBL
Match: A0A6J1GT70 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.0e-104
Identity = 200/235 (85.11%), Postives = 214/235 (91.06%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKKKKKNQYHSPV----SLPSMAALQNSNHKPIFLSHLLSFALSI 60
           MSSL FRP LVSPW KKKKK NQ+ S V    S PSMAAL N NHKPIF+SHLLSFALSI
Sbjct: 1   MSSLHFRPALVSPW-KKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSI 60

Query: 61  TLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSS 120
           TL+SPFPS+AIPS NSLSSPLSPTTPFSQSKDLP GLENGKI PCPSTNPSCVSTNPKSS
Sbjct: 61  TLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSS 120

Query: 121 SFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEF 180
           SFAF L+IPE+F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIEF
Sbjct: 121 SFAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEF 180

Query: 181 LVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
           LV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++LDWYSPTF+SM D
Sbjct: 181 LVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of Lsi02G005110 vs. ExPASy TrEMBL
Match: A0A6J1C708 (thylakoid lumenal 17.9 kDa protein, chloroplastic-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111008832 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.3e-104
Identity = 201/233 (86.27%), Postives = 211/233 (90.56%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKKKKKNQYHSP----VSLPSMAALQNSNHKPIFLSHLLSFALSI 60
           MSSL+F PPLVSPWKKKKKK N  HSP     SLPSMAALQNS+ KPI LSHLLSFALS+
Sbjct: 1   MSSLRFPPPLVSPWKKKKKKNN--HSPGSNQTSLPSMAALQNSDQKPILLSHLLSFALSV 60

Query: 61  TLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSS 120
           TLSSPFPS+AIPSLNSLSSPLSPTTPFSQSK+L  GLENGKI PCPSTNP+CVSTNPKSS
Sbjct: 61  TLSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLQIGLENGKIRPCPSTNPACVSTNPKSS 120

Query: 121 SFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEF 180
           SFAFPL+IPENF+ NPIQKLQE IL+TQRN KIQVVEDTPYGQYLEAEVDGNFGRDVIEF
Sbjct: 121 SFAFPLSIPENFTENPIQKLQEVILKTQRNAKIQVVEDTPYGQYLEAEVDGNFGRDVIEF 180

Query: 181 LVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSM 230
           LVKGDV AYR MATKVTYVYPFTTA GDSKGQEERM+KIID L WYSPTFDSM
Sbjct: 181 LVKGDVVAYRTMATKVTYVYPFTTAFGDSKGQEERMKKIIDNLGWYSPTFDSM 231

BLAST of Lsi02G005110 vs. NCBI nr
Match: XP_038893869.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 439.5 bits (1129), Expect = 1.8e-119
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKKKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITLSS 60
           MSSLQFRPPLVSPW KKKKKKNQYHSP S PSMAALQNSNHKPIFLSH+LSFALSITLSS
Sbjct: 1   MSSLQFRPPLVSPW-KKKKKKNQYHSPNSFPSMAALQNSNHKPIFLSHILSFALSITLSS 60

Query: 61  PFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAF 120
           PFPS+AIPSLNSLSSPLSPTTPFSQSK+LPTGLENGKIMPCPSTNPSCVSTNPKSSSFAF
Sbjct: 61  PFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAF 120

Query: 121 PLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKG 180
           PLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKG
Sbjct: 121 PLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKG 180

Query: 181 DVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
           DVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL+WYSPTFDSM D
Sbjct: 181 DVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLNWYSPTFDSMDD 230

BLAST of Lsi02G005110 vs. NCBI nr
Match: XP_004154123.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 hypothetical protein Csa_013578 [Cucumis sativus])

HSP 1 Score: 431.0 bits (1107), Expect = 6.4e-117
Identity = 217/232 (93.53%), Postives = 224/232 (96.55%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKK-KKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITLS 60
           MSSLQFRPPLVSPWKKK    KNQYHSPVS+PSM+ LQN+NHKPIFLSHLLSFALSITLS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60

Query: 61  SPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSFA 120
           SPFPS+AIPSLNSLSSPLSPTTPFSQSK+LPTGLENGKIMPCPS NPSCVSTNPKSSSFA
Sbjct: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120

Query: 121 FPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVK 180
           FPLNIP+NFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV+
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180

Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
           GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTFDSM D
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

BLAST of Lsi02G005110 vs. NCBI nr
Match: XP_008439847.1 (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA0055338.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa] >TYJ99264.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 4.1e-116
Identity = 218/233 (93.56%), Postives = 224/233 (96.14%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKK--KKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITL 60
           MSSLQFRP LVSPWKKK     KNQYHSPVS+PSM+ALQN NHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  SSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           +SPFPSVAIPSLNSLSSPLSPTTPFSQSK+LPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIP+NFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTFDSM D
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

BLAST of Lsi02G005110 vs. NCBI nr
Match: KAG7012320.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389.4 bits (999), Expect = 2.1e-104
Identity = 199/235 (84.68%), Postives = 214/235 (91.06%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKKKKKNQYHSPV----SLPSMAALQNSNHKPIFLSHLLSFALSI 60
           MSSL FRP LVSPW KKKK  NQ+ S V    S PSMAAL N NHKPIF+SHLLSFALSI
Sbjct: 1   MSSLHFRPALVSPW-KKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSI 60

Query: 61  TLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSS 120
           TL+SPFPS+AIPS NSLSSPLSPTTPFSQSKDLP GLENGKI PCPSTNPSCVSTNPKSS
Sbjct: 61  TLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSS 120

Query: 121 SFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEF 180
           SFAFPL+IPE+++GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIEF
Sbjct: 121 SFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEF 180

Query: 181 LVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
           LV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++LDWYSPTF+SM D
Sbjct: 181 LVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of Lsi02G005110 vs. NCBI nr
Match: XP_022955221.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 389.4 bits (999), Expect = 2.1e-104
Identity = 200/235 (85.11%), Postives = 214/235 (91.06%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKKKKKNQYHSPV----SLPSMAALQNSNHKPIFLSHLLSFALSI 60
           MSSL FRP LVSPW KKKKK NQ+ S V    S PSMAAL N NHKPIF+SHLLSFALSI
Sbjct: 1   MSSLHFRPALVSPW-KKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSI 60

Query: 61  TLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSS 120
           TL+SPFPS+AIPS NSLSSPLSPTTPFSQSKDLP GLENGKI PCPSTNPSCVSTNPKSS
Sbjct: 61  TLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSS 120

Query: 121 SFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEF 180
           SFAF L+IPE+F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIEF
Sbjct: 121 SFAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEF 180

Query: 181 LVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
           LV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++LDWYSPTF+SM D
Sbjct: 181 LVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of Lsi02G005110 vs. TAIR 10
Match: AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast )

HSP 1 Score: 249.6 bits (636), Expect = 2.4e-66
Identity = 132/194 (68.04%), Postives = 160/194 (82.47%), Query Frame = 0

Query: 38  NSNHKPI-FLSHLLSFALSITLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENG 97
           +S   PI  L  L+SFAL+I+L+S  P++AIPSL+S S PL  TTPF+QSK + TGL NG
Sbjct: 34  SSTSPPISLLPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNG 93

Query: 98  KIMPCPSTNPSCVSTNPKSSSFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTP 157
           KI PCPSTNP CVSTNP SSSF+FPL IPE  + +PI+KL+EAI+ TQ+NPK  V+EDTP
Sbjct: 94  KIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTP 153

Query: 158 YGQYLEAEVD-GNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKI 217
           YG+Y+EAEV+ G F RDV+EFLVK DV AYR MATKVT+VYPFTTA GDSKGQEER++K+
Sbjct: 154 YGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKL 213

Query: 218 IDQLDWYSPTFDSM 230
           IDQL WY+PTF+SM
Sbjct: 214 IDQLGWYAPTFESM 224

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SW333.4e-6568.04Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
Match NameE-valueIdentityDescription
A0A0A0LRK93.1e-11793.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1[more]
A0A5A7UK022.0e-11693.56Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3AZP32.0e-11693.56thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A6J1GT701.0e-10485.11thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moscha... [more]
A0A6J1C7082.3e-10486.27thylakoid lumenal 17.9 kDa protein, chloroplastic-like isoform X3 OS=Momordica c... [more]
Match NameE-valueIdentityDescription
XP_038893869.11.8e-11996.54thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida][more]
XP_004154123.16.4e-11793.53thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 ... [more]
XP_008439847.14.1e-11693.56PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA... [more]
KAG7012320.12.1e-10484.68Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper... [more]
XP_022955221.12.1e-10485.11thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata... [more]
Match NameE-valueIdentityDescription
AT4G24930.12.4e-6668.04thylakoid lumenal 17.9 kDa protein, chloroplast [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
IPR037734Thylakoid lumenal 17.9kDa proteinPANTHERPTHR36783THYLAKOID LUMENAL 17.9 KDA PROTEIN, CHLOROPLASTICcoord: 15..230

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G005110.1Lsi02G005110.1mRNA