Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGATTGAGGATAGAACCAAAAATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGAAGAAGAAGAAGAATCAGTACCACTCCCCAGTTTCTCTTCCTTCCATGGCCGCTCTTCAAAATTCAAACCACAAACCCATTTTCCTCTCTCATCTCCTTTCTTTCGCCCTCTCTATAACCCTAAGCTCACCATTTCCTTCTGTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACTACTCCATTTTCTCAATCCAAGGACTTACCAACTGGACTAGAAAACGGGTATGCTCTGAATTTTGTAATTTGAACTGCTTCTGTTCAATTTTGTTACTAGTTTGTAGTTTCTGTCTGCCCTCAATTTGCATTGGTTTTCTGAACTGAATCATTGTCAATGTAGCTAACTTCCTCTGTGGGGTTTCCCCCAAATTTGTTCACCTTAATGTTGCAGGAAAATTATGCCCTGCCCATCAACCAATCCCTCTTGTGTTTCCACAAATCCTAAATCGTCTTCTTTTGCATTCCCTTTAAACATTCCTGAGAATTTCAGTGGGAATCCAATTCAGGTTTTAGTTCTCTGAAAATCGAGCATGATATGTTTGTATGTTCTTCTACAAATTTGGTTTCTCTTGGTGGTGTTGCTTTTCATGTTTCTGCTCTACATTTATTTGCAGAAACTGCAGGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACTCCATATGGTAATTGAACTGAACTTATCAATAGCAGATTTAAACTTTGCATTTCAGATTGATATACATATTTTAATTAGACTGCTGAGATAGAGATGAGAATGGATTCTATTTACCAATTACCACAGTGACCGTTGGCTTATTCTTTTGAATTCAATAGTGCTTTAACATAGATAAAGAAGTAAATCCTTGGTTGAGTTATAACTTTTAAGTTTGATTTTTAAACTCTCAAAAATAGGTAATAGTTCCTTAAAGTTTCATTGTTATATCTTACAAATCCATAGACCTTCAGTAATATTTAATAGTAAGTCCAAGGATCTATTTGGCACAAAGTTGAAAGCTTGTAAACTATGAAGCTCAAAACAAAGTGTCAGTATTAGACTCGTATCAAACATGGATATGTTCGTACATGCTAAAAAACATGTCTGGAAAAGACAATTTTATAATTTCGGACACGACTTTGACACGGCTCGACATGGCTTGTTATGACTCTAGAAAATATTTAACCTACAAATTAGGGGGGAAAATTGATATTCTCTTGTCGTTTGAATCCTTATATATTGGTCCATCCTAAAGTAATAGAATGATATCTTCATCCTCTAATCATAGCCACCTAAATCAACTGAACTTTGTATGTTTTTAGTGAAGTATATTTTTGTTTGATGTTAAATTTACATGTATTTGTCTATAAAGAAGTATTATATATCAACATAGACACATATTTTATATATTTTTTTAAAAATATGTGTCCTTGTGTCCTATCATTTAAGAAATTGGCGTGTAGCTGTGTCCATGTCGTGTTGTGTTCATGTCCGTCCTTCTTATTTCATTGATTTATTCGATATAAAATCAAAAGTTCGAGGGCTTATTTCGTTAAACACTTGTTAAGTTCATAGACCAATTAAATGGAACTTAGATAGTTTAGCAACCTATGTCGATACTTTTTAGATCTCACATGAAAATCTCGAGCCTTACACGTAAAAGAGAGTATGATTATGGCTTATAGAACAAGATGATTAATGATTATGACAGGTCAATATTTAGAAGCTGAGGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAAAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCCTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAGGAAGATTATAGATCAGTTGGATTGGTATTCTCCAACCTTCGATTCCATGGCTGACTAGTACAAACCCTGCTTCTTTCTTTATTCTTTGTTTCTCTTCCCCATCATTTTTACTCAATCTGATTAAACTCATTTTCAGCCGCAAATATTTTTGCCTTAGATTATATATGTATAAAAAAGAATGTTTCAACTTCATTCCTATCTAGAATTATTCTTGTTGATATTTGATGAGTTATTTATACCAACTAATGTTTGGAAATTATGTTTTAAATACTCAAAATCTACAAGAGTTTTAGCTCAAGTTATTGAAGTCGTACTAAGCATAGCCC
mRNA sequence
CCAAGATTGAGGATAGAACCAAAAATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGAAGAAGAAGAAGAATCAGTACCACTCCCCAGTTTCTCTTCCTTCCATGGCCGCTCTTCAAAATTCAAACCACAAACCCATTTTCCTCTCTCATCTCCTTTCTTTCGCCCTCTCTATAACCCTAAGCTCACCATTTCCTTCTGTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACTACTCCATTTTCTCAATCCAAGGACTTACCAACTGGACTAGAAAACGGGAAAATTATGCCCTGCCCATCAACCAATCCCTCTTGTGTTTCCACAAATCCTAAATCGTCTTCTTTTGCATTCCCTTTAAACATTCCTGAGAATTTCAGTGGGAATCCAATTCAGAAACTGCAGGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACTCCATATGGTCAATATTTAGAAGCTGAGGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAAAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCCTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAGGAAGATTATAGATCAGTTGGATTGGTATTCTCCAACCTTCGATTCCATGGCTGACTAGTACAAACCCTGCTTCTTTCTTTATTCTTTGTTTCTCTTCCCCATCATTTTTACTCAATCTGATTAAACTCATTTTCAGCCGCAAATATTTTTGCCTTAGATTATATATGTATAAAAAAGAATGTTTCAACTTCATTCCTATCTAGAATTATTCTTGTTGATATTTGATGAGTTATTTATACCAACTAATGTTTGGAAATTATGTTTTAAATACTCAAAATCTACAAGAGTTTTAGCTCAAGTTATTGAAGTCGTACTAAGCATAGCCC
Coding sequence (CDS)
ATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGAAGAAGAAGAAGAATCAGTACCACTCCCCAGTTTCTCTTCCTTCCATGGCCGCTCTTCAAAATTCAAACCACAAACCCATTTTCCTCTCTCATCTCCTTTCTTTCGCCCTCTCTATAACCCTAAGCTCACCATTTCCTTCTGTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACTACTCCATTTTCTCAATCCAAGGACTTACCAACTGGACTAGAAAACGGGAAAATTATGCCCTGCCCATCAACCAATCCCTCTTGTGTTTCCACAAATCCTAAATCGTCTTCTTTTGCATTCCCTTTAAACATTCCTGAGAATTTCAGTGGGAATCCAATTCAGAAACTGCAGGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACTCCATATGGTCAATATTTAGAAGCTGAGGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAAAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCCTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAGGAAGATTATAGATCAGTTGGATTGGTATTCTCCAACCTTCGATTCCATGGCTGACTAG
Protein sequence
MSSLQFRPPLVSPWKKKKKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD
Homology
BLAST of Lsi02G005110 vs. ExPASy Swiss-Prot
Match:
Q9SW33 (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)
HSP 1 Score: 249.6 bits (636), Expect = 3.4e-65
Identity = 132/194 (68.04%), Postives = 160/194 (82.47%), Query Frame = 0
Query: 38 NSNHKPI-FLSHLLSFALSITLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENG 97
+S PI L L+SFAL+I+L+S P++AIPSL+S S PL TTPF+QSK + TGL NG
Sbjct: 34 SSTSPPISLLPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNG 93
Query: 98 KIMPCPSTNPSCVSTNPKSSSFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTP 157
KI PCPSTNP CVSTNP SSSF+FPL IPE + +PI+KL+EAI+ TQ+NPK V+EDTP
Sbjct: 94 KIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTP 153
Query: 158 YGQYLEAEVD-GNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKI 217
YG+Y+EAEV+ G F RDV+EFLVK DV AYR MATKVT+VYPFTTA GDSKGQEER++K+
Sbjct: 154 YGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKL 213
Query: 218 IDQLDWYSPTFDSM 230
IDQL WY+PTF+SM
Sbjct: 214 IDQLGWYAPTFESM 224
BLAST of Lsi02G005110 vs. ExPASy TrEMBL
Match:
A0A0A0LRK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1)
HSP 1 Score: 431.0 bits (1107), Expect = 3.1e-117
Identity = 217/232 (93.53%), Postives = 224/232 (96.55%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKK-KKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITLS 60
MSSLQFRPPLVSPWKKK KNQYHSPVS+PSM+ LQN+NHKPIFLSHLLSFALSITLS
Sbjct: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
Query: 61 SPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSFA 120
SPFPS+AIPSLNSLSSPLSPTTPFSQSK+LPTGLENGKIMPCPS NPSCVSTNPKSSSFA
Sbjct: 61 SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
Query: 121 FPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVK 180
FPLNIP+NFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV+
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTFDSM D
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232
BLAST of Lsi02G005110 vs. ExPASy TrEMBL
Match:
A0A5A7UK02 (Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004760 PE=4 SV=1)
HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 218/233 (93.56%), Postives = 224/233 (96.14%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKK--KKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITL 60
MSSLQFRP LVSPWKKK KNQYHSPVS+PSM+ALQN NHKPIFLSHLLSFALSITL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
Query: 61 SSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
+SPFPSVAIPSLNSLSSPLSPTTPFSQSK+LPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPLNIP+NFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTFDSM D
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of Lsi02G005110 vs. ExPASy TrEMBL
Match:
A0A1S3AZP3 (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484512 PE=4 SV=1)
HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 218/233 (93.56%), Postives = 224/233 (96.14%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKK--KKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITL 60
MSSLQFRP LVSPWKKK KNQYHSPVS+PSM+ALQN NHKPIFLSHLLSFALSITL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
Query: 61 SSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
+SPFPSVAIPSLNSLSSPLSPTTPFSQSK+LPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPLNIP+NFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTFDSM D
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of Lsi02G005110 vs. ExPASy TrEMBL
Match:
A0A6J1GT70 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)
HSP 1 Score: 389.4 bits (999), Expect = 1.0e-104
Identity = 200/235 (85.11%), Postives = 214/235 (91.06%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKKKKKNQYHSPV----SLPSMAALQNSNHKPIFLSHLLSFALSI 60
MSSL FRP LVSPW KKKKK NQ+ S V S PSMAAL N NHKPIF+SHLLSFALSI
Sbjct: 1 MSSLHFRPALVSPW-KKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSI 60
Query: 61 TLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSS 120
TL+SPFPS+AIPS NSLSSPLSPTTPFSQSKDLP GLENGKI PCPSTNPSCVSTNPKSS
Sbjct: 61 TLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSS 120
Query: 121 SFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEF 180
SFAF L+IPE+F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIEF
Sbjct: 121 SFAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEF 180
Query: 181 LVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
LV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++LDWYSPTF+SM D
Sbjct: 181 LVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Lsi02G005110 vs. ExPASy TrEMBL
Match:
A0A6J1C708 (thylakoid lumenal 17.9 kDa protein, chloroplastic-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111008832 PE=4 SV=1)
HSP 1 Score: 388.3 bits (996), Expect = 2.3e-104
Identity = 201/233 (86.27%), Postives = 211/233 (90.56%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKKKKKNQYHSP----VSLPSMAALQNSNHKPIFLSHLLSFALSI 60
MSSL+F PPLVSPWKKKKKK N HSP SLPSMAALQNS+ KPI LSHLLSFALS+
Sbjct: 1 MSSLRFPPPLVSPWKKKKKKNN--HSPGSNQTSLPSMAALQNSDQKPILLSHLLSFALSV 60
Query: 61 TLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSS 120
TLSSPFPS+AIPSLNSLSSPLSPTTPFSQSK+L GLENGKI PCPSTNP+CVSTNPKSS
Sbjct: 61 TLSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLQIGLENGKIRPCPSTNPACVSTNPKSS 120
Query: 121 SFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEF 180
SFAFPL+IPENF+ NPIQKLQE IL+TQRN KIQVVEDTPYGQYLEAEVDGNFGRDVIEF
Sbjct: 121 SFAFPLSIPENFTENPIQKLQEVILKTQRNAKIQVVEDTPYGQYLEAEVDGNFGRDVIEF 180
Query: 181 LVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSM 230
LVKGDV AYR MATKVTYVYPFTTA GDSKGQEERM+KIID L WYSPTFDSM
Sbjct: 181 LVKGDVVAYRTMATKVTYVYPFTTAFGDSKGQEERMKKIIDNLGWYSPTFDSM 231
BLAST of Lsi02G005110 vs. NCBI nr
Match:
XP_038893869.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida])
HSP 1 Score: 439.5 bits (1129), Expect = 1.8e-119
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKKKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITLSS 60
MSSLQFRPPLVSPW KKKKKKNQYHSP S PSMAALQNSNHKPIFLSH+LSFALSITLSS
Sbjct: 1 MSSLQFRPPLVSPW-KKKKKKNQYHSPNSFPSMAALQNSNHKPIFLSHILSFALSITLSS 60
Query: 61 PFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAF 120
PFPS+AIPSLNSLSSPLSPTTPFSQSK+LPTGLENGKIMPCPSTNPSCVSTNPKSSSFAF
Sbjct: 61 PFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAF 120
Query: 121 PLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKG 180
PLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKG
Sbjct: 121 PLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKG 180
Query: 181 DVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
DVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL+WYSPTFDSM D
Sbjct: 181 DVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLNWYSPTFDSMDD 230
BLAST of Lsi02G005110 vs. NCBI nr
Match:
XP_004154123.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 hypothetical protein Csa_013578 [Cucumis sativus])
HSP 1 Score: 431.0 bits (1107), Expect = 6.4e-117
Identity = 217/232 (93.53%), Postives = 224/232 (96.55%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKK-KKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITLS 60
MSSLQFRPPLVSPWKKK KNQYHSPVS+PSM+ LQN+NHKPIFLSHLLSFALSITLS
Sbjct: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
Query: 61 SPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSFA 120
SPFPS+AIPSLNSLSSPLSPTTPFSQSK+LPTGLENGKIMPCPS NPSCVSTNPKSSSFA
Sbjct: 61 SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
Query: 121 FPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVK 180
FPLNIP+NFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV+
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTFDSM D
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232
BLAST of Lsi02G005110 vs. NCBI nr
Match:
XP_008439847.1 (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA0055338.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa] >TYJ99264.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa])
HSP 1 Score: 428.3 bits (1100), Expect = 4.1e-116
Identity = 218/233 (93.56%), Postives = 224/233 (96.14%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKK--KKKKNQYHSPVSLPSMAALQNSNHKPIFLSHLLSFALSITL 60
MSSLQFRP LVSPWKKK KNQYHSPVS+PSM+ALQN NHKPIFLSHLLSFALSITL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
Query: 61 SSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
+SPFPSVAIPSLNSLSSPLSPTTPFSQSK+LPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPLNIP+NFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTFDSM D
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of Lsi02G005110 vs. NCBI nr
Match:
KAG7012320.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 389.4 bits (999), Expect = 2.1e-104
Identity = 199/235 (84.68%), Postives = 214/235 (91.06%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKKKKKNQYHSPV----SLPSMAALQNSNHKPIFLSHLLSFALSI 60
MSSL FRP LVSPW KKKK NQ+ S V S PSMAAL N NHKPIF+SHLLSFALSI
Sbjct: 1 MSSLHFRPALVSPW-KKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSI 60
Query: 61 TLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSS 120
TL+SPFPS+AIPS NSLSSPLSPTTPFSQSKDLP GLENGKI PCPSTNPSCVSTNPKSS
Sbjct: 61 TLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSS 120
Query: 121 SFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEF 180
SFAFPL+IPE+++GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIEF
Sbjct: 121 SFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEF 180
Query: 181 LVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
LV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++LDWYSPTF+SM D
Sbjct: 181 LVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Lsi02G005110 vs. NCBI nr
Match:
XP_022955221.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata])
HSP 1 Score: 389.4 bits (999), Expect = 2.1e-104
Identity = 200/235 (85.11%), Postives = 214/235 (91.06%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKKKKKNQYHSPV----SLPSMAALQNSNHKPIFLSHLLSFALSI 60
MSSL FRP LVSPW KKKKK NQ+ S V S PSMAAL N NHKPIF+SHLLSFALSI
Sbjct: 1 MSSLHFRPALVSPW-KKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSI 60
Query: 61 TLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENGKIMPCPSTNPSCVSTNPKSS 120
TL+SPFPS+AIPS NSLSSPLSPTTPFSQSKDLP GLENGKI PCPSTNPSCVSTNPKSS
Sbjct: 61 TLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSS 120
Query: 121 SFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEF 180
SFAF L+IPE+F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIEF
Sbjct: 121 SFAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEF 180
Query: 181 LVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFDSMAD 232
LV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++LDWYSPTF+SM D
Sbjct: 181 LVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Lsi02G005110 vs. TAIR 10
Match:
AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast )
HSP 1 Score: 249.6 bits (636), Expect = 2.4e-66
Identity = 132/194 (68.04%), Postives = 160/194 (82.47%), Query Frame = 0
Query: 38 NSNHKPI-FLSHLLSFALSITLSSPFPSVAIPSLNSLSSPLSPTTPFSQSKDLPTGLENG 97
+S PI L L+SFAL+I+L+S P++AIPSL+S S PL TTPF+QSK + TGL NG
Sbjct: 34 SSTSPPISLLPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNG 93
Query: 98 KIMPCPSTNPSCVSTNPKSSSFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTP 157
KI PCPSTNP CVSTNP SSSF+FPL IPE + +PI+KL+EAI+ TQ+NPK V+EDTP
Sbjct: 94 KIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTP 153
Query: 158 YGQYLEAEVD-GNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKI 217
YG+Y+EAEV+ G F RDV+EFLVK DV AYR MATKVT+VYPFTTA GDSKGQEER++K+
Sbjct: 154 YGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKL 213
Query: 218 IDQLDWYSPTFDSM 230
IDQL WY+PTF+SM
Sbjct: 214 IDQLGWYAPTFESM 224
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SW33 | 3.4e-65 | 68.04 | Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LRK9 | 3.1e-117 | 93.53 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1 | [more] |
A0A5A7UK02 | 2.0e-116 | 93.56 | Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... | [more] |
A0A1S3AZP3 | 2.0e-116 | 93.56 | thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... | [more] |
A0A6J1GT70 | 1.0e-104 | 85.11 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moscha... | [more] |
A0A6J1C708 | 2.3e-104 | 86.27 | thylakoid lumenal 17.9 kDa protein, chloroplastic-like isoform X3 OS=Momordica c... | [more] |
Match Name | E-value | Identity | Description | |
XP_038893869.1 | 1.8e-119 | 96.54 | thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida] | [more] |
XP_004154123.1 | 6.4e-117 | 93.53 | thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 ... | [more] |
XP_008439847.1 | 4.1e-116 | 93.56 | PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA... | [more] |
KAG7012320.1 | 2.1e-104 | 84.68 | Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper... | [more] |
XP_022955221.1 | 2.1e-104 | 85.11 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata... | [more] |
Match Name | E-value | Identity | Description | |
AT4G24930.1 | 2.4e-66 | 68.04 | thylakoid lumenal 17.9 kDa protein, chloroplast | [more] |