Lsi02G005080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G005080
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr02: 4309173 .. 4311400 (+)
RNA-Seq ExpressionLsi02G005080
SyntenyLsi02G005080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGCTGTTCCATATCTGCTGTCTCCATCTTTTTCTAGTTGCTGCAAAGGAAGGTGCCAGGGACTGATTGCATGTATGTTTCTCTGTACCTTCATCTCAGAAGAAAAATGATCTCATTTCTGGATCAAAATGCCTTTGTCAGGGCAGAATCTGGTTGAATTTTTCTCATTTCTAATCCTGAAAATCCAGAGTTTCCCTTTAGAGGAGATCAAGTTTTCATCACAAAGGAACTCCCAAGAATACCACTTTTCGATCATACGATCTGTATCATGCACAACTACATCAGTGGTGTTCCCTTCTCTTGCCATGATAGCAGCACTGTAAATTGTTGCCATTCTTCCTGGTGCCTGAGGACTATCTCCTCTTGGTCCATCCACGACCACCACATCCCATTTGACTTTATAAACTTCTCTTGGAAGATCTGTCAAGGCAAGTTTGCACTTAGATGAATTCCTGAGCCCTGAGTCTGGTGCACATGATTTGTTTTCTCTTGCATGCTTTAACAACTTGTAAGCTTTTTCTGCATAAAGCTTGTAATCAACTTTGTACAATCGTGTGTGATTTGAGTCGACTTTGAATGTGCTTAGTTTGTAGGGATCATCCTCAAGAAAAACATTCTTTCCACCGTCATTGACTGCTGAGAGGTTAAGGTACTGTGATTCAATCCCAAAGAAAAGGAGATTGCAGGGTGCCTTTTCAGCAATCAGATTTGAGAGAAGCTTGAATTCCTTCTCTGAAATAGCGGCTTCATTTGCAGAGGTTCTATGATCGTCTGAGAACCTTGATAATGGGGGTTGAAGCTTTGGAGGCAATGCAATTGCTAGAAGTGGAGAAGTATAAGATGTGGTAAATGCAATCCTAACGAGTCTGAGAATGGAGAGACTAGACAGAATCAAGACGAGAACAGGTAGGATTTTGTTTCTTGTAAAACTCATGCTTTTGCTTCCTCTGCTGTTTTTGAAGCTTACTGATGGATATGACTGCTGTGAGGGCGAGATAGAGGGGGGAGGAAGCGTTTCTGATGGCACAAGTGAGTGGCAATCCACCACTTCTGGAGGCATTTTGTTTTACTGTTGTTCACTTTCAGCCGCATCAGAGCCACCATCTTATTCTTATTTAGAGGAGCACTTTTTGTGGGGGTGTTGCTAGGTGCAAGTTGTTCTGCCTAATCCCCACTTGAGTGTGGAATAAGAAATGCTTTTGCTTGTTCCCAAAGCATTGCCTTTTTGTATTTTTCACTCGACTGTGCTAATTGTTGTAGTTACATCCTTGCATTTGAGGATTCAAAAGTGGCCACTGCAGAGCCTCAAAAGGGTATAAATTTCAAGGAGGTTGGTCATTTCAATCATTGATTTCAGATGGTGACTTGGGGTTTCATTGAGACATCTGTCATCTTTTTGGCCCGTTTGGTGGCCATAAGTAGAATTGAAGGTGGCTTTCCAGTGGTTGCTGGGTCATTCTCTTCCATTTTGACCTTCTCGAACTTTGTTGTTCTCCTCTGTGCTCTTCTTGTTAAAGGTGGAAATACTTTGCCATTCATTCTTCAAAATGACTACCACAAATATGATATATTCAAACCCTTGGAATGGAAGGCTGGAAATTGATCTTCATTTTACTGAATGCTGATACACATTTTGTCTAAAATAGCCAGGAAATGGATCATCCGTCACTATTTTCCAACCATTCACCGACCCCGTTGAAAAAGAAAGACGATCAGCATCATGGAGACGGTAAGCCGAGGAAGAGGGTGAAGGTAAGGCAAAAACGACCAGAAAGTTTCAACTTTTAATTCTGTGATAATGATACTTTGGTAAAGTGTACAAAAACTGGCCTGCACACAATTTACACTGAATCTATTAACTGATGAATGTATTTACAGAGATATGCTTACTCAAAGTGAAGTTAGGAACGAAACGATGGCTGAGATTCCAGTTTAGTGGTCATTTTCAAGGGGAAGCTTCGTGGAAAGTACCAAAGCAAAAGATTTAACGATAAAGAGCTGTTTGAAAAGTGACTCAAAGGGGGAAAAGATTAAATTAGAACATCAACAACATTAACAGTGAGCTGTTGAATGAAGATCAGCCTTTTTTTTTTTTGGTATTATAAATAAAAGTCGTTGTAGAAAAAGAAAAGAACAAGCAGTGGAAACCCAGGTTTTGTCCTGGACTAAGTCTTCAATCAATTAATAACTAATATTTAATATCAATTTGCAGGTGTAAAAACTTTTAG

mRNA sequence

CAGCTGTTCCATATCTGCTGTCTCCATCTTTTTCTAGTTGCTGCAAAGGAAGGTGCCAGGGACTGATTGCATAGTTTCCCTTTAGAGGAGATCAAGTTTTCATCACAAAGGAACTCCCAAGAATACCACTTTTCGATCATACGATCTGTATCATGCACAACTACATCAGTGGTGTTCCCTTCTCTTGCCATGATAGCAGCACTGTAAATTGTTGCCATTCTTCCTGGTGCCTGAGGACTATCTCCTCTTGGTCCATCCACGACCACCACATCCCATTTGACTTTATAAACTTCTCTTGGAAGATCTGTCAAGGCAAGTTTGCACTTAGATGAATTCCTGAGCCCTGAGTCTGGTGCACATGATTTGTTTTCTCTTGCATGCTTTAACAACTTTTTGTAGGGATCATCCTCAAGAAAAACATTCTTTCCACCGTCATTGACTGCTGAGAGGTTAAGGTACTGTGATTCAATCCCAAAGAAAAGGAGATTGCAGGGTGCCTTTTCAGCAATCAGATTTGAGAGAAGCTTGAATTCCTTCTCTGAAATAGCGGCTTCATTTGCAGAGGTTCTATGATCGTCTGAGAACCTTGATAATGGGGGTTGAAGCTTTGGAGGCAATGCAATTGCTAGAAGTGGAGAAGTATAAGATGTGGTAAATGCAATCCTAACGAGTCTGAGAATGGAGAGACTAGACAGAATCAAGACGAGAACAGGTAGGATTTTGTTTCTTGTAAAACTCATGCTTTTGCTTCCTCTGCTGTTTTTGAAGCTTACTGATGGATATGACTGCTGTGAGGGCGAGATAGAGGGGGGAGGAAGCGTTTCTGATGGCACAAGTGAGTGGCAATCCACCACTTCTGGAGGCATTTTGTTTTACTGTTGTTCACTTTCAGCCGCATCAGAGCCACCATCTTATTCTTATTTAGAGGAGCACTTTTTGTGGGGGTGTTGCTAGGTGCAAGTTGTTCTGCCTAATCCCCACTTGAGTGTGGAATAAGAAATGCTTTTGCTTGTTCCCAAAGCATTGCCTTTTTGTATTTTTCACTCGACTGTGCTAATTGTTGTAGTTACATCCTTGCATTTGAGGATTCAAAAGTGGCCACTGCAGAGCCTCAAAAGGGTATAAATTTCAAGGAGGTTGGTCATTTCAATCATTGATTTCAGATGGTGACTTGGGGTTTCATTGAGACATCTGTCATCTTTTTGGCCCGTTTGGTGGCCATAAGTAGAATTGAAGGTGGCTTTCCAGTGGTTGCTGGGTCATTCTCTTCCATTTTGACCTTCTCGAACTTTGTTGTTCTCCTCTGTGCTCTTCTTGTTAAAGGAAATGGATCATCCGTCACTATTTTCCAACCATTCACCGACCCCGTTGAAAAAGAAAGACGATCAGCATCATGGAGACGAGATATGCTTACTCAAAGTGAAGTTAGGAACGAAACGATGGCTGAGATTCCAGTTTAGTGGTCATTTTCAAGGGGAAGCTTCGTGGAAAGTACCAAAGCAAAAGATTTAACGATAAAGAGCTGTTTGAAAAGTGACTCAAAGGGGGAAAAGATTAAATTAGAACATCAACAACATTAACAGTGAGCTGTTGAATGAAGATCAGCCTTTTTTTTTTTTGGTATTATAAATAAAAGTCGTTGTAGAAAAAGAAAAGAACAAGCAGTGGAAACCCAGGTTTTGTCCTGGACTAAGTCTTCAATCAATTAATAACTAATATTTAATATCAATTTGCAGGTGTAAAAACTTTTAG

Coding sequence (CDS)

ATGGTGACTTGGGGTTTCATTGAGACATCTGTCATCTTTTTGGCCCGTTTGGTGGCCATAAGTAGAATTGAAGGTGGCTTTCCAGTGGTTGCTGGGTCATTCTCTTCCATTTTGACCTTCTCGAACTTTGTTGTTCTCCTCTGTGCTCTTCTTGTTAAAGGAAATGGATCATCCGTCACTATTTTCCAACCATTCACCGACCCCGTTGAAAAAGAAAGACGATCAGCATCATGGAGACGAGATATGCTTACTCAAAGTGAAGTTAGGAACGAAACGATGGCTGAGATTCCAGTTTAG

Protein sequence

MVTWGFIETSVIFLARLVAISRIEGGFPVVAGSFSSILTFSNFVVLLCALLVKGNGSSVTIFQPFTDPVEKERRSASWRRDMLTQSEVRNETMAEIPV
Homology
[Close]
BLAST of Lsi02G005080 vs. ExPASy TrEMBL
Match: A0A0A0LTV5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050530 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.7e-14
Identity = 55/104 (52.88%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 1  MVTWGFIETSVIFLARLVAISRIEGGFPVVAGSFSSILTFSNFVVLLCALLVKGNGSSVT 60
          M TWGFI+TSVIFLARLVA+SR+EGGFPVVA                      GNGSSVT
Sbjct: 1  MGTWGFIQTSVIFLARLVAMSRVEGGFPVVA----------------------GNGSSVT 60

Query: 61 IFQPFTDPVEKERRSASWR------RDMLTQSEVRNETMAEIPV 99
          + Q FTDP+EKE R           +   +QSEVRN+TM EIPV
Sbjct: 61 MSQLFTDPLEKESRLNEGSELKKRVKGHASQSEVRNKTMGEIPV 82

[Close]
BLAST of Lsi02G005080 vs. NCBI nr
Match: KGN64414.1 (hypothetical protein Csa_014210 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 5.6e-14
Identity = 55/104 (52.88%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 1  MVTWGFIETSVIFLARLVAISRIEGGFPVVAGSFSSILTFSNFVVLLCALLVKGNGSSVT 60
          M TWGFI+TSVIFLARLVA+SR+EGGFPVVA                      GNGSSVT
Sbjct: 1  MGTWGFIQTSVIFLARLVAMSRVEGGFPVVA----------------------GNGSSVT 60

Query: 61 IFQPFTDPVEKERRSASWR------RDMLTQSEVRNETMAEIPV 99
          + Q FTDP+EKE R           +   +QSEVRN+TM EIPV
Sbjct: 61 MSQLFTDPLEKESRLNEGSELKKRVKGHASQSEVRNKTMGEIPV 82

The following BLAST results are available for this feature:
BLAST of Lsi02G005080 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi02G005080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTV52.7e-1452.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050530 PE=4 SV=1[more]
BLAST of Lsi02G005080 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64414.15.6e-1452.88hypothetical protein Csa_014210 [Cucumis sativus][more]
BLAST of Lsi02G005080 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G005080.1Lsi02G005080.1mRNA