Lsi02G004130 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G004130
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Mediator of RNA polymerase II transcription subunit 13, putative
Location	chr02: 3457671 .. 3458078 (-)
RNA-Seq Expression	Lsi02G004130
Synteny	Lsi02G004130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAAGAAACCAGAGCTTCAACACGACGACCATCGCCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACACCCACACCGGCACTTCAAAGCCTGCAACTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACTCCTCCTTCCCGGTTCAAGCTTGAGGCCATTCGAACCCGGTCTTCCGTCACCGATCGGAGATGGGACTTCGGCCAGTCGCTGTGGGACTCCTATGAGATCGTGACGGTTTCGAAGAAGCTGGAGGCGGGGCTGGTGCTCGATGGCGATGGGTTCCGGGAGGCCGACGGCGGCGGTGGGCGGAGTCAGCGGAAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTATTAG

mRNA sequence

ATGAAGAAGAAGAAACCAGAGCTTCAACACGACGACCATCGCCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACACCCACACCGGCACTTCAAAGCCTGCAACTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACTCCTCCTTCCCGGTTCAAGCTTGAGGCCATTCGAACCCGGTCTTCCGTCACCGATCGGAGATGGGACTTCGGCCAGTCGCTGTGGGACTCCTATGAGATCGTGACGGTTTCGAAGAAGCTGGAGGCGGGGCTGGTGCTCGATGGCGATGGGTTCCGGGAGGCCGACGGCGGCGGTGGGCGGAGTCAGCGGAAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTATTAG

Coding sequence (CDS)

ATGAAGAAGAAGAAACCAGAGCTTCAACACGACGACCATCGCCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACACCCACACCGGCACTTCAAAGCCTGCAACTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACTCCTCCTTCCCGGTTCAAGCTTGAGGCCATTCGAACCCGGTCTTCCGTCACCGATCGGAGATGGGACTTCGGCCAGTCGCTGTGGGACTCCTATGAGATCGTGACGGTTTCGAAGAAGCTGGAGGCGGGGCTGGTGCTCGATGGCGATGGGTTCCGGGAGGCCGACGGCGGCGGTGGGCGGAGTCAGCGGAAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTATTAG

Protein sequence

MKKKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTRSSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCNSLRNLFSRASSRRFHY

Homology

[Close]

BLAST of Lsi02G004130 vs. ExPASy TrEMBL
Match: A0A0A0LTM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.6e-55
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 3   KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 62
           KKKP+L   HDD RHLEILKAVAQAWH+HTGTSKPA+EFDAHRRNSRP  PSRFK+EAIR
Sbjct: 2   KKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPM-PSRFKIEAIR 61

Query: 63  TR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCN 122
           +R S+V+DRRWDF QSLWDSYEIVTVSKKLEAGLVLDGDGFREA+ GGGRSQRK+RESCN
Sbjct: 62  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 121

Query: 123 SLRNLFSRASSRRFHY 136
           SLRNLF+RASSRRF+Y
Sbjct: 122 SLRNLFNRASSRRFNY 136

[Close]

BLAST of Lsi02G004130 vs. ExPASy TrEMBL
Match: A0A5A7UNW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003950 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 9.7e-55
Identity = 116/136 (85.29%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 3   KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 62
           KKKP+L   HD  RHLEILKAVAQAWH HTGTSKPA+EFDAHRRNSRPT PSRFKLEAIR
Sbjct: 2   KKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPT-PSRFKLEAIR 61

Query: 63  TR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCN 122
           +R +SV++RRWDF QSLWDSYEIVTVSKKLEAGLVLDGDGFREA+ GGGRSQRK+RESCN
Sbjct: 62  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 121

Query: 123 SLRNLFSRASSRRFHY 136
           SLRNLF+RASSRRF+Y
Sbjct: 122 SLRNLFNRASSRRFNY 136

[Close]

BLAST of Lsi02G004130 vs. ExPASy TrEMBL
Match: A0A1S3AX17 (uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 9.7e-55
Identity = 116/136 (85.29%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 3   KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 62
           KKKP+L   HD  RHLEILKAVAQAWH HTGTSKPA+EFDAHRRNSRPT PSRFKLEAIR
Sbjct: 2   KKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPT-PSRFKLEAIR 61

Query: 63  TR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCN 122
           +R +SV++RRWDF QSLWDSYEIVTVSKKLEAGLVLDGDGFREA+ GGGRSQRK+RESCN
Sbjct: 62  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 121

Query: 123 SLRNLFSRASSRRFHY 136
           SLRNLF+RASSRRF+Y
Sbjct: 122 SLRNLFNRASSRRFNY 136

[Close]

BLAST of Lsi02G004130 vs. ExPASy TrEMBL
Match: A0A6J1C5Z6 (uncharacterized protein LOC111008716 OS=Momordica charantia OX=3673 GN=LOC111008716 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.6e-47
Identity = 110/137 (80.29%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 3   KKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR 62
           KKKPE++ DDHRHLEILKAVAQAWH+HTG+SKPA EFDAHRRN R T PSRFKLEAIRTR
Sbjct: 2   KKKPEVE-DDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGT-PSRFKLEAIRTR 61

Query: 63  SSVTDR----RWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGG-GRSQRKKRES 122
           SS  DR    RWDF QSLWDSYEIVTVSKKLEAGLVLDGD F E DGGG GR QRK  ES
Sbjct: 62  SSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTES 121

Query: 123 CNSLRNLFSRASSRRFH 135
            NSLRNLF+R SSRRF+
Sbjct: 122 NNSLRNLFNRVSSRRFN 136

[Close]

BLAST of Lsi02G004130 vs. ExPASy TrEMBL
Match: A0A6J1KNC1 (uncharacterized protein LOC111495727 OS=Cucurbita maxima OX=3661 GN=LOC111495727 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.1e-45
Identity = 104/132 (78.79%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 4   KKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTRS 63
           K   +  D+  HLEILKAVAQAW +HTGTSKPA+EFDAHRRN R   PSRFKLEAIR+RS
Sbjct: 2   KNKAVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRAN-PSRFKLEAIRSRS 61

Query: 64  SVTD-RRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCNSLR 123
           SV   RRWDFGQSLWDSYEIV VSKKLEAGLVLDGDGFREAD GGGR+QRK+RESCNSLR
Sbjct: 62  SVAGMRRWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREAD-GGGRNQRKQRESCNSLR 121

Query: 124 NLFSRASSRRFH 135
           NLF+R +SRRF+
Sbjct: 122 NLFNR-TSRRFN 130

[Close]

BLAST of Lsi02G004130 vs. NCBI nr
Match: XP_038894267.1 (uncharacterized protein LOC120082919 [Benincasa hispida])

HSP 1 Score: 240.7 bits (613), Expect = 7.1e-60
Identity = 124/134 (92.54%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 3   KKKPELQ-HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRT 62
           KKKPELQ  DDHRHLEILKAVAQAWH+HTG+SKPA+EFDAHRRNSRPT PSRFKLEAIRT
Sbjct: 2   KKKPELQDDDDHRHLEILKAVAQAWHSHTGSSKPASEFDAHRRNSRPT-PSRFKLEAIRT 61

Query: 63  RSSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCNSL 122
           RSSV+DRRWDFGQSLWDSYEIVTVSKKLEAGLVLD DGFRE DGGGGRSQRKKRESCNSL
Sbjct: 62  RSSVSDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDRDGFREVDGGGGRSQRKKRESCNSL 121

Query: 123 RNLFSRASSRRFHY 136
           RNLFSRASSRRF+Y
Sbjct: 122 RNLFSRASSRRFNY 134

[Close]

BLAST of Lsi02G004130 vs. NCBI nr
Match: XP_011651756.1 (uncharacterized protein LOC105434938 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 5.3e-55
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 3   KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 62
           KKKP+L   HDD RHLEILKAVAQAWH+HTGTSKPA+EFDAHRRNSRP  PSRFK+EAIR
Sbjct: 2   KKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPM-PSRFKIEAIR 61

Query: 63  TR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCN 122
           +R S+V+DRRWDF QSLWDSYEIVTVSKKLEAGLVLDGDGFREA+ GGGRSQRK+RESCN
Sbjct: 62  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 121

Query: 123 SLRNLFSRASSRRFHY 136
           SLRNLF+RASSRRF+Y
Sbjct: 122 SLRNLFNRASSRRFNY 136

[Close]

BLAST of Lsi02G004130 vs. NCBI nr
Match: XP_008438871.1 (PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo] >KAA0055261.1 uncharacterized protein E6C27_scaffold80G001040 [Cucumis melo var. makuwa] >TYJ99185.1 uncharacterized protein E5676_scaffold248G003950 [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.0e-54
Identity = 116/136 (85.29%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 3   KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 62
           KKKP+L   HD  RHLEILKAVAQAWH HTGTSKPA+EFDAHRRNSRPT PSRFKLEAIR
Sbjct: 2   KKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPT-PSRFKLEAIR 61

Query: 63  TR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCN 122
           +R +SV++RRWDF QSLWDSYEIVTVSKKLEAGLVLDGDGFREA+ GGGRSQRK+RESCN
Sbjct: 62  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 121

Query: 123 SLRNLFSRASSRRFHY 136
           SLRNLF+RASSRRF+Y
Sbjct: 122 SLRNLFNRASSRRFNY 136

[Close]

BLAST of Lsi02G004130 vs. NCBI nr
Match: XP_022137185.1 (uncharacterized protein LOC111008716 [Momordica charantia])

HSP 1 Score: 198.0 bits (502), Expect = 5.3e-47
Identity = 110/137 (80.29%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 3   KKKPELQHDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIRTR 62
           KKKPE++ DDHRHLEILKAVAQAWH+HTG+SKPA EFDAHRRN R T PSRFKLEAIRTR
Sbjct: 2   KKKPEVE-DDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGT-PSRFKLEAIRTR 61

Query: 63  SSVTDR----RWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGG-GRSQRKKRES 122
           SS  DR    RWDF QSLWDSYEIVTVSKKLEAGLVLDGD F E DGGG GR QRK  ES
Sbjct: 62  SSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTES 121

Query: 123 CNSLRNLFSRASSRRFH 135
            NSLRNLF+R SSRRF+
Sbjct: 122 NNSLRNLFNRVSSRRFN 136

[Close]

BLAST of Lsi02G004130 vs. NCBI nr
Match: KAE8652596.1 (hypothetical protein Csa_014373 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-44
Identity = 103/136 (75.74%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 3   KKKPELQ--HDDHRHLEILKAVAQAWHTHTGTSKPATEFDAHRRNSRPTPPSRFKLEAIR 62
           KKKP+L   HDD RHLEILKAVAQAWH+HTGTSKPA+EFDAHRRNSRP  PSRFK+EAIR
Sbjct: 2   KKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPM-PSRFKIEAIR 61

Query: 63  TR-SSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKKRESCN 122
           +R S+V+DRRWDF QSLWDSYEIVTVSKKLE+              GGGRSQRK+RESCN
Sbjct: 62  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLES--------------GGGRSQRKRRESCN 121

Query: 123 SLRNLFSRASSRRFHY 136
           SLRNLF+RASSRRF+Y
Sbjct: 122 SLRNLFNRASSRRFNY 122

[Close]

BLAST of Lsi02G004130 vs. TAIR 10
Match: AT4G24700.1 (unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 102.1 bits (253), Expect = 3.7e-22
Identity = 62/136 (45.59%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 2   KKKKPELQHDDHRHLEILKAVAQAWHTHTGTSK-PATEFDAHRRNS-RPTPPSRFKLEAI 61
           K +  E + +  + LE++KA AQAW +H+ TSK    EFDA R+++      SRFK EA+
Sbjct: 8   KDENEEEEEEKKKRLELMKAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKASRFKTEAL 67

Query: 62  RTRSSVTDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDGDGFREADGGGGRSQRKK--RES 121
             +   +   W+FGQSLWD YEI++VSKKLE  L L+   F  +D  G +  +KK  R+S
Sbjct: 68  SAKHHPSFLDWEFGQSLWDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKMKKKKTRDS 127

Query: 122 CNSLRNLFSRASSRRF 134
            NSLR+LF+R+SS+RF
Sbjct: 128 RNSLRSLFTRSSSKRF 143

The following BLAST results are available for this feature:

BLAST of Lsi02G004130 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G004130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTM3	2.6e-55	85.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1	[more]
A0A5A7UNW1	9.7e-55	85.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AX17	9.7e-55	85.29	uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=...	[more]
A0A6J1C5Z6	2.6e-47	80.29	uncharacterized protein LOC111008716 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1KNC1	9.1e-45	78.79	uncharacterized protein LOC111495727 OS=Cucurbita maxima OX=3661 GN=LOC111495727...	[more]

BLAST of Lsi02G004130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894267.1	7.1e-60	92.54	uncharacterized protein LOC120082919 [Benincasa hispida]	[more]
XP_011651756.1	5.3e-55	85.29	uncharacterized protein LOC105434938 [Cucumis sativus]	[more]
XP_008438871.1	2.0e-54	85.29	PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo] >KAA0055261.1 unc...	[more]
XP_022137185.1	5.3e-47	80.29	uncharacterized protein LOC111008716 [Momordica charantia]	[more]
KAE8652596.1	1.4e-44	75.74	hypothetical protein Csa_014373 [Cucumis sativus]	[more]

BLAST of Lsi02G004130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24700.1	3.7e-22	45.59	unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..120
None	No IPR available	PANTHER	PTHR34665	FAMILY NOT NAMED	coord: 7..134
None	No IPR available	PANTHER	PTHR34665:SF1	OS02G0595200 PROTEIN	coord: 7..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G004130.1	Lsi02G004130.1	mRNA