Lsi02G003980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G003980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr02: 3378714 .. 3379181 (-)
RNA-Seq ExpressionLsi02G003980
SyntenyLsi02G003980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACGGCCGCAAGTGCCGGCCCAGTGGGTGGTCCACCAGACTTTGAATCTGAAGAGACTCGAGAATTTTATACCTGTGAGGTTGCCGATGGGAGCTAAGTGGGAGCTTTTGGGCTCAGAGGCATTGAAGCCAACAAAACAGCCGAGGAGGGAGTTGGTGGTTTTGAATGGAGAAGGAGTGGAGATGATGTTTAAAGGGACATGGGTGAGAATTGGGTGGCCATTGGCAAGAAATTCTGAGCCTTTTAAGGTGATTGAGAGATTGGGTGAGGGACTGTCTAGCAAGGTGGGGATTATGTTTATGGCGTTTTTGGTTAAGCTTGGTGGAGCCATGAGGAAGATGGGGAGAAAATGGAGGAGGATGAGAGTTTTGTTGAGGTTTGGGTTTGGTGGAGAAGGAATAAGGAAGGTTTATATAGAGAAAGAAAACGACATGGAAGCTTACAAGTGTTGTATTTGTGTTTGA

mRNA sequence

ATGTCACGGCCGCAAGTGCCGGCCCAGTGGGTGGTCCACCAGACTTTGAATCTGAAGAGACTCGAGAATTTTATACCTGTGAGGTTGCCGATGGGAGCTAAGTGGGAGCTTTTGGGCTCAGAGGCATTGAAGCCAACAAAACAGCCGAGGAGGGAGTTGGTGGTTTTGAATGGAGAAGGAGTGGAGATGATGTTTAAAGGGACATGGGTGAGAATTGGGTGGCCATTGGCAAGAAATTCTGAGCCTTTTAAGGTGATTGAGAGATTGGGTGAGGGACTGTCTAGCAAGGTGGGGATTATGTTTATGGCGTTTTTGGTTAAGCTTGGTGGAGCCATGAGGAAGATGGGGAGAAAATGGAGGAGGATGAGAGTTTTGTTGAGGTTTGGGTTTGGTGGAGAAGGAATAAGGAAGGTTTATATAGAGAAAGAAAACGACATGGAAGCTTACAAGTGTTGTATTTGTGTTTGA

Coding sequence (CDS)

ATGTCACGGCCGCAAGTGCCGGCCCAGTGGGTGGTCCACCAGACTTTGAATCTGAAGAGACTCGAGAATTTTATACCTGTGAGGTTGCCGATGGGAGCTAAGTGGGAGCTTTTGGGCTCAGAGGCATTGAAGCCAACAAAACAGCCGAGGAGGGAGTTGGTGGTTTTGAATGGAGAAGGAGTGGAGATGATGTTTAAAGGGACATGGGTGAGAATTGGGTGGCCATTGGCAAGAAATTCTGAGCCTTTTAAGGTGATTGAGAGATTGGGTGAGGGACTGTCTAGCAAGGTGGGGATTATGTTTATGGCGTTTTTGGTTAAGCTTGGTGGAGCCATGAGGAAGATGGGGAGAAAATGGAGGAGGATGAGAGTTTTGTTGAGGTTTGGGTTTGGTGGAGAAGGAATAAGGAAGGTTTATATAGAGAAAGAAAACGACATGGAAGCTTACAAGTGTTGTATTTGTGTTTGA

Protein sequence

MSRPQVPAQWVVHQTLNLKRLENFIPVRLPMGAKWELLGSEALKPTKQPRRELVVLNGEGVEMMFKGTWVRIGWPLARNSEPFKVIERLGEGLSSKVGIMFMAFLVKLGGAMRKMGRKWRRMRVLLRFGFGGEGIRKVYIEKENDMEAYKCCICV
Homology
[Close]
BLAST of Lsi02G003980 vs. ExPASy TrEMBL
Match: A0A2P5FFY5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_074010 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-09
Identity = 39/78 (50.00%), Postives = 44/78 (56.41%), Query Frame = 0 

Query: 21 LENFIPVRLPMGAKWELLGSEALKPTKQP-----------RRELVVLNGEGVEMMFKGTW 80
          L N +P+  P+GA W LLG  A KPTKQP             E     GEGV MM  GTW
Sbjct: 2  LMNLMPLSFPIGATWRLLGWWASKPTKQPTVVFWALSEEHEEEEEEKKGEGVAMMLGGTW 61

Query: 81 VRIGWPLARNSEPFKVIE 88
          VRIG PLARN  P +VI+
Sbjct: 62 VRIGCPLARNWVPSRVID 79

[Close]
BLAST of Lsi02G003980 vs. NCBI nr
Match: PON96697.1 (hypothetical protein TorRG33x02_074010 [Trema orientale])

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-09
Identity = 39/78 (50.00%), Postives = 44/78 (56.41%), Query Frame = 0 

Query: 21 LENFIPVRLPMGAKWELLGSEALKPTKQP-----------RRELVVLNGEGVEMMFKGTW 80
          L N +P+  P+GA W LLG  A KPTKQP             E     GEGV MM  GTW
Sbjct: 2  LMNLMPLSFPIGATWRLLGWWASKPTKQPTVVFWALSEEHEEEEEEKKGEGVAMMLGGTW 61

Query: 81 VRIGWPLARNSEPFKVIE 88
          VRIG PLARN  P +VI+
Sbjct: 62 VRIGCPLARNWVPSRVID 79

The following BLAST results are available for this feature:
BLAST of Lsi02G003980 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi02G003980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5FFY53.2e-0950.00Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_074010 PE=4 SV... [more]
BLAST of Lsi02G003980 vs. NCBI nr
Match NameE-valueIdentityDescription
PON96697.16.6e-0950.00hypothetical protein TorRG33x02_074010 [Trema orientale][more]
BLAST of Lsi02G003980 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G003980.1Lsi02G003980.1mRNA