Lsi02G002410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G002410
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDDE Tnp4 domain-containing protein
Locationchr02: 2034817 .. 2040857 (+)
RNA-Seq ExpressionLsi02G002410
SyntenyLsi02G002410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAAATTCACCAATGGCAGAGCAAACAGAGTCGCAGAAAAACCCTGCAAACTCTACACTCTGGACAATCCCTGCTCCCAAAATCCCTTATTTGCAGGCTCTACTTCTATACCTACGGATTCTTCTCTGTCATTGTCTCTTCTTCAAACCCTCTTTTCACTTTCTTCTTCCATTTCCCTTTCTGCACTCATTTTGACCTCAAATCTTCCTTACTTTTTCCCCACTCACCGACGCCGTTTCTGGTTTGCAAACCACCAGGACGCCCTCCAGAGTAGTATTACCATGTATGGTTTCTGCCCTTTATCGCTTTGTCTCCTTAAACATTAGCTTTGGTTTTTCTGAGAATTTGAATTTTTAGCTTCTTCATTTGTTCTTCTAAGGGTATTTTGGAAAATGGGTATGATCTTATTAGCCTAAAGTTCAATGAATTTGGGTGGTTGGTTACTGTTAACTTGATGTACTGGGTATTTTATGTGGTGTTCTTGTTTATTGGAAACCAATCTGCAGATTAGAACCAGTTTGAGGATGTAGTAGAACGTTATGTGGGTGTTTTTTGTTTGTTATTTTTACTCTTCATTCTCTCTAGAAGTTCTCGTTGGCGTTGAGTTTTGGTTGTTTTGTAGCTACGGTATGATTCTATCTATTTGACTTGTTGTTTTTCCTTCCTTTACCAACATGGGACTTTGGTGATGTTTTGTGATTCAATATTTTTTTGTTTAGATAAAGATACGAAACTTTTCATTAGGAGGATCAAGGATGAAAAGAGACTATTGCTATGGGATGCAATGAAACGAAACCTTAATGAACCATAATAAGGGACTTAAAACATAAGCAGTAATTTAAATAAAAAACAGAAAAGAAATTTTGTGATTCAATATTTTGATGTTTTTTTTTTTTTTTTTTCCTCCTTTTATGAAGGTGGATGCGTTCTTTTGGAGGTGCTAATTATGTTGTTATTAATAGTTACCTAATACCATGGCTACAGATCAAATAGAGTTCTCAATTTGAACTTAGAACTTCTTGATAGTTACATTTAAGCCATGGCAGAGGCTAAATATCAAGTAGAATTTATGTTCAACTTACAACTCCTAGCATTACCTAAGCACTTCTTGATTTTGATCACCAGGCTGGTGAGGGCGTTGTCATGTTTTTTCCCCACAACAATAGGCATTAGACCTTCTGAACGGTTCCTGCCGTTCTAATTTGTTCATATTAGAAACTCCAAACTATTGTTCTACAAAACCACTTGGGTATTTGATATTTTTTCAAGATCTCTACAAAATTCTGGTTTATGTCCTGTCATCTCTAATTGTACTTGTACTATCCTTGATGGATTATTAGGAAAGATCTTCTGAGTGCTTGTTTTCATAATACTATTTGCCTCTCGCTCAAAATCTCCTTTTCATTTCATTTGTCAAATATTATGGCAAGTTGATTCTTTTTATTTGAAGAAAAAAATAAATTGATGATATTCCCATACTTTGGCTGCAGAGTTTAAATTTACTATGGAGAGTTCTGATGATGAAAAGGAGGGAACTTATGGGAAATATGTTCCAAGAGAACCGAGTCATAATCTAGTATCTAATGGTGCAAAATTTGTAGATGAAGTACTCAATGGACAAAATGAACGTTGTTTAGAACATTTCCGCATGGACAAGCACATATTTTATAAGTTGTGTGATATTTTGCAAGCCAAAGGCTTACTGCGTCATACAAACCGCATTAAGATTGAAGAGCAACTAGCCATATTCATGTTTATTATTGGTCACAACCTTAGGACACGAGCAGTGCAAGAGCTGTTCAGATATTCAGGAGAAACAATAAGTCGCCATTTTAACAATGTATTGAATGCAATTATGGCAATATCATTGGACTTCTTTCAACCTCCTGGATCCGATGTTCCTCCTCCAGAAATTTTAAAAGATCCAAGATTCTATCCCTACTTTAAGGTAGCACGGTGGTTTTAGTTTGACTAGTGTTTTCCTATAATGTGATGTGACTTACCCTTTCATTAACTTATCTTATTTTAGGATTGTGTGGGGGCAATTGATGGCATACACATCCCTGTGATGGTTGGTGTTGATGAGCAAGGACCTTTTCGAAATAAGAATGGACTACTTTCTCAAATTGTTTTGGCAGCATGCTCATTTGACCTCAAGTTCCATTACGTTCTAGCAGGATGGGAAGGATCGGCATCTGATTTGCAGGTTCTGAACTCGGCACTTACTAGGCGAAATAAACTACATGTCCCGGAAGGTGCGTGTATTCTAAGAGGATAATCATGAATCTCTTAGTTTTAGTGTATCTAGTATAGTAGAAATGGTATTTGAATGGTCAGGCTATTGCTCTCTGGCCATTTTTGGGCTAATATTGTTGAATTGCAGGTAAATACTACCTTGTGGACCAGAAATATATGAACATGCCTGGTTTTATTGCCCCTTATCATGATATCCCCTATCATTCAAAGGAATATCCTGGTGGTTACCATCCGCAAGATGCCAAAGAGCTATTTAATCTACGGCATTCATTGTTGCGCAATGCAACTGATAGAACTTTTGGAGCTCTAAAGGCGCGCTTCCCCATACTTTTGTTAGCTCCTCCTTACCCATTACAGACACAAGTTAAGTTGGTCGTTGCGACATGTGCGATTCACAATTACATTCGGAGGGAGAATCCTGACGATTGGCTCTTTAGATCATATGAACAGGACCATGTTCCACATATGGGGGATTCTTTGTCTCAATTAGACGCAGAACAGCTGACAACACACATTGAGACTCCAATTGTGGACATTGCTTTTGAGACAGAAGAACTAGAAATTACATCACAGTTGCGGGATACTATTGCAACTGAATTATGGAGTGACTACATTAATGATATATCACCCATGTAAAGTGAATTTATATTATCATAGCTTCTAAGTTAGGTCAGATAATTTTCAGGAACATAAGAAATACACAAATGGGGTTTGATTTTGAAGGTGTATATTGACATTACTATGTTTATGAAAGGAATATAATAGTGGACATTGTTTCTCTCTGGTTTTTGCACAAGTATCTACATAGGGTGTATTAAGGGTGCCTGTAATGTCAACTGTTCATTTTGTTTGTAATACAATATTGATAATCCAAATGCAACAAACAATCACTGGAACTTTTGGAGGCAACTTTCACATTCTTGATGACTGCAGAAAAATCAACAATAAGCTGGTTACATCAGTTGCTGATATGTCTCTTGTTTTTTCTTTCAAAATTGTGTTAGTTTGATGCAACAAATATGGGTTCTAACATGTCAATTTTCTCTTGGACTTGTTTTTTCTCTTAGGGAAGCCAAATTCTTGAGTACTGCTGCCAAGGAAGCAACAGGTTAGCCTTCTTGAAGATTTGAACTGACTGATAAGTGATATTTGTATGCATTGAGGTGAATTCTGTTACACATACCAAACTATTTGGCTCTTGATGCTAGGCATTGAGGATGGTTGTTACGATAGGTTAAGAGTCAGAGCTATCTGAATGCGATTGATTAATATTTGCTTCTTTTTCTAGACAATAGTGGATGCTGTTTTGATCAAATGTTGTATATATCATACCCCAATTGCAAAATGTTGGTAAACAAAGCCTTTTTTGCCCCTTCTTGAAAGTGATAAATATGTGGCTGCTATGTCTGCTTGAGTTGAATTATGATTGAGAACGTGGTTCACTTTTTTGAAGAAAGGGCAACTGGCTTTACTTGCTCGCAACCGTCTTTTCAGATAAGAAACTGTTTTCTTCTCTTCTCTTCTTTGTTTCTTTTTTACTGCTACATTCATTTGGATTCCATCTGAAAGTACCCAAAGTTCCCTACCTCCTGTATTTTGCTTTTGATCTGTTGGCAACGTGTGTATATGGTGGTGCATTTGTACATGGGGTGGGGCTTCAAAACGGTTGGATACACGTAGCATTTGTACTTGTCTTTTGAATCAAATAGTTCGTACTAGCTTCATTTGTCTTGTCAATTCGAGTACAACAAAGTGAATAAGATATCAAATACTATTTTAAAGATCAATTGTTAGATTGCTTATCCCATGATTGTTGAACTAAAAGAAAAAAACTACTACTTTGAGGGCCCAGACAAGTTTTGAGTTATTAAACTTAGTTTTTCTGTACTTAAAACTTTGTTGGGATGGTAAGATTTGAAGTGAAGATAGACATATCACGTTACTTTTGCTTACATTCTGATGTATTTAATGGCTATTTTGTAGTGTGTGGGGGTGTGTGCTTTGGTTTATTTATTGGATTCTCTGACTTGCTCTGCTTCATTGCTCAGTCATTTTAGTTGACTTTTCTTTCTTCTTTCTGCCCTCTATGTCTTCTTTACCATCTTTCCCTTTCTGTTTTATGCACTTCTTTAATTTGTAATATTATTTTTCACATTTCTTGATGATTTCAAAAATATTCTTAAAATATAAATTCTTATGAATATTAGGTGAAACTGACTTGAAATAATGTAGGTCATTGTCAAACTGTTTTAGGTCTCAATTTTCATTAATCATTTTAAAAGATTTATATTTTTCTGATTAGACTTGAAATATTTATGAAAGATTAAAGAATAAGAGTAGATTTTTATCCGTATAAATAATGGATATAAATTATACAAACTCATGCAATGCAATATCTTAAATTTTCTATCTTGTAGTTATTGATACAAACAAATTGAGTATTAGCATAAAATATAATATACTAAGGTATTGTTAATTATTACATTATCACCCCTTCTGAAAGACATTATCACCCCTTGTGACATATGTATATTACATACATATGTGAAGAATAGTGAAGTAAAAAGTGAGGACAAAATTGAGAAAAAATAAAAGAAAGGGTAAGAAGAAGATAAAGAAAAATAGACACAAAAAGGCTGCACTAACAATCATTTCAAAACCCATTTCAATTTTCATCTCTCTTTCTCTCTCCTCAATTTCTAAATCCTTAATCCTTTCTCTCTCATCTTCTTCTTTGTTTTTATTTCTCATTCAAATTTCAGTCTCAGCTTCTCTATACAGAGACAGCGAAAGAGATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCTTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGATACTGAGGTGCCCCATCGTCGCATTTCTCCCATTTTCTCATTCTCTAATCTGGTTTTGATTTTGGGAATTCAATTCTGTTTTGCAGTCTACGGGGTCGTTTTTCCATGACAGGAGCACGAGCTTGGGGACTCTAATGGGGGTCAGCTTTCCGGCGATTACTTTTCGAGTCCCTTCCCAGAACAGAGATCAACACACCGCTGCGACGGCCGCCGCAGGCGGCGGTTCCCGCAAGAGCAAGAAGACGAAGAGAAAAACGACAACGGCGCCTGCACTGGTTGCAGATCGGAAACGGCGGTGGTGGCGGCTATGTAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAAGTGGAACGGAGATTTGGTGATGGTGCTTTCTACGGCAACGCGGTGGATCTGGAAGGCGTGGTTGCGACGGATCAACAGAGGAATGGCCGGTCTTTGTTCGCCGATGGAAGAGTTCTTCCGCCGGCGCAAACCGAGGAGGATACGTCGGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTTACCGGAATTTGCAGCGGCGGTGCCGGTTAAAATGTGGGATTTGATTTGTCGAGTATATTTAAAATACTATATTATATTTAATTAATCAAATGCTTTAATTAATGTGGAAGAAAAAAAGAAAAAAAAATGTCACCTTTATTGTGTAGGTGACCCTCTTTTCTTTTTTCCTTTCTTTGTAATTTCCTTTAATCATCTCACAGGTTATTTCTATCTTTTCCTTTTTTCTTTTTTCTTTTTTCTTTTTGAAAATAATAAAAAAATTGACACTTGAGTTCTTCGTCTTTGAAGCTTTTGGAAAATTTCTTGTTCAAGTTGTGTGAATTGTGAACTATGTTTGAGCAAAAATCATAAATGAATTTAAAACATATATCCC

mRNA sequence

TAAAAATTCACCAATGGCAGAGCAAACAGAGTCGCAGAAAAACCCTGCAAACTCTACACTCTGGACAATCCCTGCTCCCAAAATCCCTTATTTGCAGGCTCTACTTCTATACCTACGGATTCTTCTCTGTCATTGTCTCTTCTTCAAACCCTCTTTTCACTTTCTTCTTCCATTTCCCTTTCTGCACTCATTTTGACCTCAAATCTTCCTTACTTTTTCCCCACTCACCGACGCCGTTTCTGGTTTGCAAACCACCAGGACGCCCTCCAGAGTAGTATTACCATAGTTTAAATTTACTATGGAGAGTTCTGATGATGAAAAGGAGGGAACTTATGGGAAATATGTTCCAAGAGAACCGAGTCATAATCTAGTATCTAATGGTGCAAAATTTGTAGATGAAGTACTCAATGGACAAAATGAACGTTGTTTAGAACATTTCCGCATGGACAAGCACATATTTTATAAGTTGTGTGATATTTTGCAAGCCAAAGGCTTACTGCGTCATACAAACCGCATTAAGATTGAAGAGCAACTAGCCATATTCATGTTTATTATTGGTCACAACCTTAGGACACGAGCAGTGCAAGAGCTGTTCAGATATTCAGGAGAAACAATAAGTCGCCATTTTAACAATGTATTGAATGCAATTATGGCAATATCATTGGACTTCTTTCAACCTCCTGGATCCGATGTTCCTCCTCCAGAAATTTTAAAAGATCCAAGATTCTATCCCTACTTTAAGTCTACGGGGTCGTTTTTCCATGACAGGAGCACGAGCTTGGGGACTCTAATGGGGGTCAGCTTTCCGGCGATTACTTTTCGAGTCCCTTCCCAGAACAGAGATCAACACACCGCTGCGACGGCCGCCGCAGGCGGCGGTTCCCGCAAGAGCAAGAAGACGAAGAGAAAAACGACAACGGCGCCTGCACTGGTTGCAGATCGGAAACGGCGGTGGTGGCGGCTATGTAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAAGTGGAACGGAGATTTGGTGATGGTGCTTTCTACGGCAACGCGGTGGATCTGGAAGGCGTGGTTGCGACGGATCAACAGAGGAATGGCCGGTCTTTGTTCGCCGATGGAAGAGTTCTTCCGCCGGCGCAAACCGAGGAGGATACGTCGGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTTACCGGAATTTGCAGCGGCGGTGCCGGTTAAAATGTGGGATTTGATTTGTCGAGTATATTTAAAATACTATATTATATTTAATTAATCAAATGCTTTAATTAATGTGGAAGAAAAAAAGAAAAAAAAATGTCACCTTTATTGTGTAGGTGACCCTCTTTTCTTTTTTCCTTTCTTTGTAATTTCCTTTAATCATCTCACAGGTTATTTCTATCTTTTCCTTTTTTCTTTTTTCTTTTTTCTTTTTGAAAATAATAAAAAAATTGACACTTGAGTTCTTCGTCTTTGAAGCTTTTGGAAAATTTCTTGTTCAAGTTGTGTGAATTGTGAACTATGTTTGAGCAAAAATCATAAATGAATTTAAAACATATATCCC

Coding sequence (CDS)

ATGGAGAGTTCTGATGATGAAAAGGAGGGAACTTATGGGAAATATGTTCCAAGAGAACCGAGTCATAATCTAGTATCTAATGGTGCAAAATTTGTAGATGAAGTACTCAATGGACAAAATGAACGTTGTTTAGAACATTTCCGCATGGACAAGCACATATTTTATAAGTTGTGTGATATTTTGCAAGCCAAAGGCTTACTGCGTCATACAAACCGCATTAAGATTGAAGAGCAACTAGCCATATTCATGTTTATTATTGGTCACAACCTTAGGACACGAGCAGTGCAAGAGCTGTTCAGATATTCAGGAGAAACAATAAGTCGCCATTTTAACAATGTATTGAATGCAATTATGGCAATATCATTGGACTTCTTTCAACCTCCTGGATCCGATGTTCCTCCTCCAGAAATTTTAAAAGATCCAAGATTCTATCCCTACTTTAAGTCTACGGGGTCGTTTTTCCATGACAGGAGCACGAGCTTGGGGACTCTAATGGGGGTCAGCTTTCCGGCGATTACTTTTCGAGTCCCTTCCCAGAACAGAGATCAACACACCGCTGCGACGGCCGCCGCAGGCGGCGGTTCCCGCAAGAGCAAGAAGACGAAGAGAAAAACGACAACGGCGCCTGCACTGGTTGCAGATCGGAAACGGCGGTGGTGGCGGCTATGTAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAAGTGGAACGGAGATTTGGTGATGGTGCTTTCTACGGCAACGCGGTGGATCTGGAAGGCGTGGTTGCGACGGATCAACAGAGGAATGGCCGGTCTTTGTTCGCCGATGGAAGAGTTCTTCCGCCGGCGCAAACCGAGGAGGATACGTCGGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTTACCGGAATTTGCAGCGGCGGTGCCGGTTAA

Protein sequence

MESSDDEKEGTYGKYVPREPSHNLVSNGAKFVDEVLNGQNERCLEHFRMDKHIFYKLCDILQAKGLLRHTNRIKIEEQLAIFMFIIGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGSDVPPPEILKDPRFYPYFKSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATAAAGGGSRKSKKTKRKTTTAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
Homology
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BLAST of Lsi02G002410 vs. ExPASy Swiss-Prot
Match: Q6DR24 (Uncharacterized protein At3g17950 OS=Arabidopsis thaliana OX=3702 GN=Y-3 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.9e-31
Identity = 91/189 (48.15%), Postives = 112/189 (59.26%), Query Frame = 0 

Query: 148 KSTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHTAATAAAGGGSRKSKKTKR 207
           +STGSFFHDRS +LGTLMG SF A   + FR  S+       A + A+   +R++ + KR
Sbjct: 23  ESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAISRASSSNARRNHQRKR 82

Query: 208 KTTTAPALVADRKRRWWRLCRDD-------GV-------KPASLGEFLEVERRFGDGAFY 267
             + +      R+R+WWR CRDD       G+       K +SLGE+LEVERRFGD A Y
Sbjct: 83  PPSNSAEPEPHRRRKWWRFCRDDDDDAAGNGIHRGTGDSKRSSLGEYLEVERRFGDEAVY 142

Query: 268 GNA-VDLEGVVAT---DQQ--RNGRSLFADGRVLPPAQTE----EDTSAAGALCRFSVSL 309
            +A  +LE  V     DQQ     R+LFADGRVLPPA  E    E T  A +LCRF VSL
Sbjct: 143 NSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTGEGTPVATSLCRFPVSL 202

[Close]
BLAST of Lsi02G002410 vs. ExPASy TrEMBL
Match: A0A5D3BLI7 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002420 PE=3 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 4.4e-127
Identity = 299/673 (44.43%), Postives = 303/673 (45.02%), Query Frame = 0 

Query: 1   MESSDDEKEGTYGKYVPREPSHNLVSNGAKFVDEVLNGQNERCLEHFRMDKHIFYKLCDI 60
           MESSDDEK+GTYGKYVPREPSHNLVSNGAKFVDEVLNGQNERCLEHFRMDKH+FYKLCDI
Sbjct: 1   MESSDDEKDGTYGKYVPREPSHNLVSNGAKFVDEVLNGQNERCLEHFRMDKHVFYKLCDI 60

Query: 61  LQAKGLLRHTNRIKIEEQLAIFMFIIGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120
           LQAKGLLRHTNRIKIEEQLAIFMFIIGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI
Sbjct: 61  LQAKGLLRHTNRIKIEEQLAIFMFIIGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120

Query: 121 SLDFFQPPGSDVPPPEILKDPRFYPYFK-------------------------------- 180
           SLDFFQPPGS+VPPPEIL+DPRFYPYFK                                
Sbjct: 121 SLDFFQPPGSNVPPPEILEDPRFYPYFKDCVGAIDGIHIPVMVGVDEQGPFRNKNGQLSQ 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 IVLAACSFDLKFHYVLAGWEGSASDLQVLNSALTRRNKLHVPEGKYYLVDQKYMNMPGFV 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 APYHDITYHSKEYPGGYHPQDAKELFNLRHSLLRNATERTFGALKARFPILLSAPPYPLQ 300

Query: 301 ------------------------------------------------------------ 309
                                                                       
Sbjct: 301 TQVKLVVATCAIHNYIRRENPDDWFFRLYEQDHVPHMEDSLPQLEAEQLTANIETPIVDV 360

[Close]
BLAST of Lsi02G002410 vs. ExPASy TrEMBL
Match: A0A0A0LQI1 (DDE Tnp4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042870 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 4.0e-88
Identity = 232/517 (44.87%), Postives = 251/517 (48.55%), Query Frame = 0 

Query: 1   MESSDDEKEGTYGKYVPREPSHNLVSNGAKFVDEVLNGQNERCLEHFRMDKHIF------ 60
           MESSDDEK+GTYGKYVPREPSHNLVSNGAKFVDEVLNGQNERCL+HFRMDKH        
Sbjct: 1   MESSDDEKDGTYGKYVPREPSHNLVSNGAKFVDEVLNGQNERCLDHFRMDKHCALYSRNG 60

Query: 61  -YKLCD----------------ILQAK-------------------GLLRHTNRIKIEEQ 120
            Y L D                  Q+K                    LLR+      E  
Sbjct: 61  KYYLVDQKYMNMPGFVAPYHDITYQSKEYPGGYHPQDAKELFNLRHSLLRNATERTFEAL 120

Query: 121 LAIFMFIIG-------------------HN------------------------------ 180
            A F  ++                    HN                              
Sbjct: 121 KARFPILLSAPPYPLQTQVKLVVATCAIHNYIRRENPDDWFFRLYEQDHVPHMEDSLPQL 180

Query: 181 ----------------------------LRTRAVQELF---------------------- 240
                                       LR     E++                      
Sbjct: 181 EAEQLTANIETPIVDVAFETEELEITSQLRDSIAAEIWSDYINDISPMKVQFSRTAAKEA 240

Query: 241 ---RYSGETI-SRH---------FNNVLNAIMAISLDF-FQPPGSDVP------------ 300
              + +G T  S H         F+  ++ ++  S  F  + P + +P            
Sbjct: 241 LPGKATGVTCKSNHVFLRSRAVFFSTFVSFLLLHSFGFHLKAPQNSIPPVVCFRSVDNVC 300

Query: 301 --------------------------------PPEILKDPRFYPY----------FKSTG 309
                                           P   L  P   P            +STG
Sbjct: 301 HGGCGGVSFAVLYLLDSLTSSASLRERKEMLNPANDLLPPPSSPTNSSISSSDLDTESTG 360

[Close]
BLAST of Lsi02G002410 vs. ExPASy TrEMBL
Match: A0A1S4DUB1 (uncharacterized protein At3g17950 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503240 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 4.7e-81
Identity = 155/161 (96.27%), Postives = 156/161 (96.89%), Query Frame = 0 

Query: 148 KSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATAAAGGGSRKSKKTKRKTTT 207
           +STGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAAT  AGGGSRKSKKTKRKTTT
Sbjct: 28  ESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATVTAGGGSRKSKKTKRKTTT 87

Query: 208 APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNG 267
           APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV  DQQRNG
Sbjct: 88  APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVTADQQRNG 147

Query: 268 RSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 309
           RSLFADGRVLPPAQTEEDTSA GALCRFSVSLTGICSGGAG
Sbjct: 148 RSLFADGRVLPPAQTEEDTSATGALCRFSVSLTGICSGGAG 188

[Close]
BLAST of Lsi02G002410 vs. ExPASy TrEMBL
Match: A0A1S3CPP8 (uncharacterized protein At3g17950 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503240 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 4.7e-81
Identity = 155/161 (96.27%), Postives = 156/161 (96.89%), Query Frame = 0 

Query: 148 KSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATAAAGGGSRKSKKTKRKTTT 207
           +STGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAAT  AGGGSRKSKKTKRKTTT
Sbjct: 40  ESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATVTAGGGSRKSKKTKRKTTT 99

Query: 208 APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNG 267
           APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV  DQQRNG
Sbjct: 100 APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVTADQQRNG 159

Query: 268 RSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 309
           RSLFADGRVLPPAQTEEDTSA GALCRFSVSLTGICSGGAG
Sbjct: 160 RSLFADGRVLPPAQTEEDTSATGALCRFSVSLTGICSGGAG 200

[Close]
BLAST of Lsi02G002410 vs. ExPASy TrEMBL
Match: A0A6J1E8Y2 (uncharacterized protein At3g17950 OS=Cucurbita moschata OX=3662 GN=LOC111431726 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 3.1e-80
Identity = 154/161 (95.65%), Postives = 157/161 (97.52%), Query Frame = 0 

Query: 148 KSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATAAAGGGSRKSKKTKRKTTT 207
           +STGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AATAAAGGGSRKSKK KRKTT 
Sbjct: 28  ESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTA 87

Query: 208 APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNG 267
           APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV+ DQQRNG
Sbjct: 88  APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNG 147

Query: 268 RSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 309
           RSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG
Sbjct: 148 RSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 188

[Close]
BLAST of Lsi02G002410 vs. NCBI nr
Match: TYJ99038.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 464.2 bits (1193), Expect = 9.1e-127
Identity = 299/673 (44.43%), Postives = 303/673 (45.02%), Query Frame = 0 

Query: 1   MESSDDEKEGTYGKYVPREPSHNLVSNGAKFVDEVLNGQNERCLEHFRMDKHIFYKLCDI 60
           MESSDDEK+GTYGKYVPREPSHNLVSNGAKFVDEVLNGQNERCLEHFRMDKH+FYKLCDI
Sbjct: 1   MESSDDEKDGTYGKYVPREPSHNLVSNGAKFVDEVLNGQNERCLEHFRMDKHVFYKLCDI 60

Query: 61  LQAKGLLRHTNRIKIEEQLAIFMFIIGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120
           LQAKGLLRHTNRIKIEEQLAIFMFIIGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI
Sbjct: 61  LQAKGLLRHTNRIKIEEQLAIFMFIIGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120

Query: 121 SLDFFQPPGSDVPPPEILKDPRFYPYFK-------------------------------- 180
           SLDFFQPPGS+VPPPEIL+DPRFYPYFK                                
Sbjct: 121 SLDFFQPPGSNVPPPEILEDPRFYPYFKDCVGAIDGIHIPVMVGVDEQGPFRNKNGQLSQ 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 IVLAACSFDLKFHYVLAGWEGSASDLQVLNSALTRRNKLHVPEGKYYLVDQKYMNMPGFV 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 APYHDITYHSKEYPGGYHPQDAKELFNLRHSLLRNATERTFGALKARFPILLSAPPYPLQ 300

Query: 301 ------------------------------------------------------------ 309
                                                                       
Sbjct: 301 TQVKLVVATCAIHNYIRRENPDDWFFRLYEQDHVPHMEDSLPQLEAEQLTANIETPIVDV 360

[Close]
BLAST of Lsi02G002410 vs. NCBI nr
Match: KAF9667516.1 (hypothetical protein SADUNF_Sadunf15G0031300 [Salix dunnii])

HSP 1 Score: 334.7 bits (857), Expect = 8.3e-88
Identity = 224/524 (42.75%), Postives = 251/524 (47.90%), Query Frame = 0 

Query: 1   MESSDDEKEGTYGKYVPREPSHNLVSNGAKFVDEVLNGQNERCLEHFRMDKHIFYKLCDI 60
           ME+SDDEK+G +G  +P+E S +L +NG KFVDEVL G ++RCLE+FRMDK  FYKLCDI
Sbjct: 107 MENSDDEKDGVFGNCMPKELSISL-TNGTKFVDEVLRGPSDRCLENFRMDKQAFYKLCDI 166

Query: 61  LQAKGLLRHTNRIKIEEQLAIFMFIIGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120
           LQ KGLLRHTNRIKIEEQLAIF+FIIGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI
Sbjct: 167 LQGKGLLRHTNRIKIEEQLAIFLFIIGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 226

Query: 121 SLDFFQPPGSDVPPPEILKDPRFYPYFK-------------------------------- 180
           SLDFFQPPGSD+ PPEIL DPRFYPYFK                                
Sbjct: 227 SLDFFQPPGSDI-PPEILDDPRFYPYFKYYLVDSKYANMPGFIAPYNGVLCHLNEFVGGY 286

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 287 PPRDSRELFNQRHLLLRNVTDRIFGALKARFPILMSAPPYPLQTQVKLVVAACALHNYIR 346

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 347 REKPDDWIFKIHDHDTVLQMEESLPPLEVEPPVMQVENPALDIAFDTEQLEFSSQLRDSI 406

Query: 301 ---------------------------------------------------STGSFFHDR 309
                                                              STGSFFHDR
Sbjct: 407 AGDMWGDYNNDLSTINGRSSAKSWPWKQTISRNLHVLLVSIVWVFDSQSTLSTGSFFHDR 466

[Close]
BLAST of Lsi02G002410 vs. NCBI nr
Match: XP_038895169.1 (uncharacterized protein At3g17950 [Benincasa hispida])

HSP 1 Score: 315.5 bits (807), Expect = 5.2e-82
Identity = 157/161 (97.52%), Postives = 161/161 (100.00%), Query Frame = 0 

Query: 148 KSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATAAAGGGSRKSKKTKRKTTT 207
           +STGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATAAAGGGSRKSKKTKRKT+T
Sbjct: 28  ESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATAAAGGGSRKSKKTKRKTST 87

Query: 208 APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNG 267
           APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNG
Sbjct: 88  APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNG 147

Query: 268 RSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 309
           RSLFADGRVLPPA+TE+DTSAAGALCRFSVSLTGICSGGAG
Sbjct: 148 RSLFADGRVLPPAETEDDTSAAGALCRFSVSLTGICSGGAG 188

[Close]
BLAST of Lsi02G002410 vs. NCBI nr
Match: XP_016899568.1 (PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis melo] >XP_016899571.1 PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 9.8e-81
Identity = 155/161 (96.27%), Postives = 156/161 (96.89%), Query Frame = 0 

Query: 148 KSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATAAAGGGSRKSKKTKRKTTT 207
           +STGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAAT  AGGGSRKSKKTKRKTTT
Sbjct: 28  ESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATVTAGGGSRKSKKTKRKTTT 87

Query: 208 APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNG 267
           APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV  DQQRNG
Sbjct: 88  APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVTADQQRNG 147

Query: 268 RSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 309
           RSLFADGRVLPPAQTEEDTSA GALCRFSVSLTGICSGGAG
Sbjct: 148 RSLFADGRVLPPAQTEEDTSATGALCRFSVSLTGICSGGAG 188

[Close]
BLAST of Lsi02G002410 vs. NCBI nr
Match: XP_008465627.2 (PREDICTED: uncharacterized protein At3g17950 isoform X1 [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 9.8e-81
Identity = 155/161 (96.27%), Postives = 156/161 (96.89%), Query Frame = 0 

Query: 148 KSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATAAAGGGSRKSKKTKRKTTT 207
           +STGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAAT  AGGGSRKSKKTKRKTTT
Sbjct: 40  ESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATVTAGGGSRKSKKTKRKTTT 99

Query: 208 APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNG 267
           APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV  DQQRNG
Sbjct: 100 APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVTADQQRNG 159

Query: 268 RSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 309
           RSLFADGRVLPPAQTEEDTSA GALCRFSVSLTGICSGGAG
Sbjct: 160 RSLFADGRVLPPAQTEEDTSATGALCRFSVSLTGICSGGAG 200

[Close]
BLAST of Lsi02G002410 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 179.5 bits (454), Expect = 4.1e-45
Identity = 88/125 (70.40%), Postives = 105/125 (84.00%), Query Frame = 0 

Query: 3   SSDDEKEGTYGKYVPREPSHNLVSNGAKFVDEVLNGQNERCLEHFRMDKHIFYKLCDILQ 62
           S +++KE      +P+E S   +S+G KFV ++LNG NE+C E+FRMDK +FYKLCD+LQ
Sbjct: 4   SGEEDKEEAV--TLPKEVSKISISDGNKFVYQILNGPNEQCFENFRMDKPVFYKLCDLLQ 63

Query: 63  AKGLLRHTNRIKIEEQLAIFMFIIGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 122
            +GLLRHTNRIKIE QLAIF+FIIGHNLRTRAVQELF YSGETISRHFNNVLNA++AIS 
Sbjct: 64  TRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAISK 123

Query: 123 DFFQP 128
           DFFQP
Sbjct: 124 DFFQP 126

[Close]
BLAST of Lsi02G002410 vs. TAIR 10
Match: AT3G17950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 137.9 bits (346), Expect = 1.4e-32
Identity = 91/189 (48.15%), Postives = 112/189 (59.26%), Query Frame = 0 

Query: 148 KSTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHTAATAAAGGGSRKSKKTKR 207
           +STGSFFHDRS +LGTLMG SF A   + FR  S+       A + A+   +R++ + KR
Sbjct: 23  ESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAISRASSSNARRNHQRKR 82

Query: 208 KTTTAPALVADRKRRWWRLCRDD-------GV-------KPASLGEFLEVERRFGDGAFY 267
             + +      R+R+WWR CRDD       G+       K +SLGE+LEVERRFGD A Y
Sbjct: 83  PPSNSAEPEPHRRRKWWRFCRDDDDDAAGNGIHRGTGDSKRSSLGEYLEVERRFGDEAVY 142

Query: 268 GNA-VDLEGVVAT---DQQ--RNGRSLFADGRVLPPAQTE----EDTSAAGALCRFSVSL 309
            +A  +LE  V     DQQ     R+LFADGRVLPPA  E    E T  A +LCRF VSL
Sbjct: 143 NSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTGEGTPVATSLCRFPVSL 202

[Close]
BLAST of Lsi02G002410 vs. TAIR 10
Match: AT3G17950.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 109.0 bits (271), Expect = 6.9e-24
Identity = 77/172 (44.77%), Postives = 96/172 (55.81%), Query Frame = 0 

Query: 165 MGVSFPA---ITFRVPSQNR-DQHTAATAAAGGGSRKSKKTKRKTTTAPALVADRKRRWW 224
           MG SF A   + FR  S+       A + A+   +R++ + KR  + +      R+R+WW
Sbjct: 1   MGFSFTATMPMPFRASSRRHVSPSVAISRASSSNARRNHQRKRPPSNSAEPEPHRRRKWW 60

Query: 225 RLCRDD-------GV-------KPASLGEFLEVERRFGDGAFYGNA-VDLEGVVAT---D 284
           R CRDD       G+       K +SLGE+LEVERRFGD A Y +A  +LE  V     D
Sbjct: 61  RFCRDDDDDAAGNGIHRGTGDSKRSSLGEYLEVERRFGDEAVYNSAEAELEDAVVARYQD 120

Query: 285 QQ--RNGRSLFADGRVLPPAQTE----EDTSAAGALCRFSVSLTGICSGGAG 309
           QQ     R+LFADGRVLPPA  E    E T  A +LCRF VSLTGICSGG G
Sbjct: 121 QQPVMGERALFADGRVLPPASAEVVTGEGTPVATSLCRFPVSLTGICSGGGG 172

[Close]
BLAST of Lsi02G002410 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-11
Identity = 45/139 (32.37%), Postives = 64/139 (46.04%), Query Frame = 0 

Query: 12  YGKYVPREPSHNLVSNGAKFVDEVLNGQNERCLEHFRMDKHIFYKLCDILQAKGLLRHTN 71
           Y +Y  R P       G + +   L      CL+  RM    F  LC++LQ    L+ T 
Sbjct: 35  YDRYFQRAPVQIDRGLGWRNIWRRLQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTL 94

Query: 72  RIKIEEQLAIFMFIIGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGSD 131
            I IEE +A+F+ I GHN   R V   F  + ET+ R F  VL A   ++ D+ + P   
Sbjct: 95  NISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQ 154

Query: 132 V---PPPEILKDPRFYPYF 148
                P  +  D R++PYF
Sbjct: 155 ELYRIPERLQVDQRYWPYF 173

The following BLAST results are available for this feature:
BLAST of Lsi02G002410 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6DR241.9e-3148.15Uncharacterized protein At3g17950 OS=Arabidopsis thaliana OX=3702 GN=Y-3 PE=1 SV... [more]
BLAST of Lsi02G002410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BLI74.4e-12744.43Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A0A0LQI14.0e-8844.87DDE Tnp4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042870 PE... [more]
A0A1S4DUB14.7e-8196.27uncharacterized protein At3g17950 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A1S3CPP84.7e-8196.27uncharacterized protein At3g17950 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A6J1E8Y23.1e-8095.65uncharacterized protein At3g17950 OS=Cucurbita moschata OX=3662 GN=LOC111431726 ... [more]
BLAST of Lsi02G002410 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ99038.19.1e-12744.43putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAF9667516.18.3e-8842.75hypothetical protein SADUNF_Sadunf15G0031300 [Salix dunnii][more]
XP_038895169.15.2e-8297.52uncharacterized protein At3g17950 [Benincasa hispida][more]
XP_016899568.19.8e-8196.27PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis melo] >XP_01689... [more]
XP_008465627.29.8e-8196.27PREDICTED: uncharacterized protein At3g17950 isoform X1 [Cucumis melo][more]
BLAST of Lsi02G002410 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G41980.14.1e-4570.40CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT3G17950.11.4e-3248.15unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G17950.26.9e-2444.77unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G43722.15.1e-1132.37unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..208
NoneNo IPR availablePANTHERPTHR33544:SF15BNAANNG11020D PROTEINcoord: 148..308
IPR040344Uncharacterized protein At3g17950-likePANTHERPTHR33544FAMILY NOT NAMEDcoord: 148..308

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G002410.1Lsi02G002410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding