Lsi02G002250 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G002250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	SecE/sec61-gamma protein transport protein
Location	chr02: 1879035 .. 1881843 (+)
RNA-Seq Expression	Lsi02G002250
Synteny	Lsi02G002250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAATGTATAAACCAAACTCCAGGATTATCCGCCCTAATTCTGATCGCCGCCCACCCTCCCGTCGGCACCGCCACCGTGTTTCTTTCCGGCGGATCCACCAGATTGTACTTCGCCGGATCTCTACCCGCGTCGAAATTCCCAAATCCCCTGCCCACAACGAAGAAATTGTGCCCATGAACATGAATCGGATGATTCTCCACATTCAGAAAATTCGTGCCCTGAAACACGATTTCCAGATCTGTTCCATATGGAACCGCCAAAAGCTTAGTCCCAAATTCCGTGTTCATGTTCTTCGTTAATGGGTTTACGCCAGTGTAATCAAAAACCCTAATGGGTCTTTCTGGAAAATCGGTGGAGTACGAATTGGTAGCAATCTTTCTATAATGAGATTCCAATATGGACAAATCAGGTCGAATGAAGGATTGATTGTTCATAGAAGCAAAAAAGCTCTTTCCATTCAAACCCTCGCAGGTTTTCCCAGATGGGCAGTTCTGGAGATTGAGGCTTATGGTAATGAACACTCTTTTCTGAACTGTTTTAGGAACATTACATGGATACAGAGGAGAATCAAGGCTATGGAGTTTGTTTGAAAATGCAGTGGCAAAGGCTGTATCCTTCATATCAGGGAGGTTTTCAGGTATTGGATTAGATGGGAAATTTGTTTGTGAGCTAAGTTTATTTATTTTCCTGCTTTTGTATCTTAAGAAGCCAATGGAGGTGGAGTTATTGAAGGGGAAAATTGAAGTTACATAAGGTGTGATTGCCATTGGGAAGAGGATTCCAGAGGAGTGATCTGGAATTTGAATTTGATCTGTATTGAGCAGAAGAGTGGTGGTTTGGCCAGGAGCTATCATAATGGCTGTGGTATTGAAGGGTTTTGTGTATGCAGCATCAATCTCCACCAGTGTCAATGTATGGTTGGCTATGGCAAAGAAAAGTTCATTGTTGAGTGCTCCATTAATTACTCTCAGCAGGTAAGTTTTCCCCCATTCTACTGTTGAAATGAATGTATCTGGGCATTGAACATTGTGATGATAGAAAATTATGTTTACTGTGTGTTTGATTTTGATATAACAAAATGAAATTTTTTGAAAGTGGAGTGTAGTATTTACCTTTGCTAGAGCAAGGATAGAGAGGTCCTGGCAAGCCATTAATGGTATAGGCATCAGAATTGTTAGGTCCACCTCCAGATTTCAACATCTCATTTTCAACTTCTTCCACATCTCCATTCCACCATTCACCTGTATGTGGGGTCAAAAATGTTTAAATAACTGTTCATCACAAATCATAAATTATTAAGACCCATCTTGATAACCATTTGGTTTTTGAAACTTGTGCTTGTTTAACCACAATTTCTATATAATAGTTTTCGTGTTTTTTTTAGTTTGCTTTGATTTTGAAAACACCCCTAAAAAGTAGATAATAAAGCAATGTTTATAAGCTTAATCTTAAAAAAGGCCAAAAACCAAAACCAAGGTGATAGTTTGAAACTCAACAACTCAGTGGAGAGAGACATCAGAAGGTATTGAAGAAAGAAAGTTATTTAAAAAATTTCAAAATCACTTTTGGTTATATCCAATCAATACATGCATCATCTAAAATTGATATTTTGAAAAGCGTTTTTATAGATTAAAAAGCACATTTTACCCTTTCAAAAGTCATCGCAAACTCACTTTGCTGGGGACTTACCAAAGATAAGAGGAATCCCAGCTTCAATTGGAAAAGTGGAGAATGGGTAAGGCATGCGAGGGTAAATGATGAAGGCACCATGCACAGAAGCACGTTGCCATGAGTAATGTGCGTGCCACCACAATGTCCCTCTTTGGTTAATCACTGAGAATTTATATGTGTATGATTCTCCTGTTCTGATAGGGCACTGTGTTATATAAGCTGGACCATCTGCCCATCCTGTTCTTAATTGCTTCACCCCATGCCTGCAAATCATCAAATTTGTTAGAGACCTTATAGGTTACATTTTATTTTACTTAGTATTTAGTATTTACATTTACAAGCTCAAAGTTTCTAAACCTGTAATGTTGAAAGGCAAAGAATGCTCTTGTTCAATACTAGAGATTATATTCTACTAGCTATAACATGTTTGAAACTTACCAATGAATAGTTGTGTTTTCATTTATGCAATTATTGACCTTGATTTCAACTGTATCACCTTCATGGACTGCAATGGTTGGCCCTGGATACTGTCCATTCACAGTTAGAAGTTGCTTTGTATGGCACAATCTTGTCACCCTCTTCCACTCCACCTTTATGGGAAAGAATTTGATAGTTTTCAGTTAGAAATGGCAATAACCACACAGAAACATCTATTCTTTGTTAAGAACAAAATATATAGCTGCAAATATGCAACTAAATAGTTGTGGAACTTTCTTCTTTAAGCTTACATTAAACCGAAAGCGTCGAGTGACAGGAGAAGCAAAGCTGAATGGCACAAAACCAGCAAGGAGGATGCTTATGAATATGACAAGCAATAGCATCATCCCACACTGCTGGCTGAGGCTCTTCATTGTCATCAAATTTTTTAACTCTTCAAAACCAGTTAGCTAACAATTTATATATATACTACAAAAAGCTGCACTATTTTTCTTATAGTTTTTTGCTCACTTTGAACTCACATTCTGCAGTCATTGGCACAGTCTGTGAATCCTTTTGATGTGGTGAGTGGTGCTTTGTTGTGGGGGGTTGGTGTGTAAGTGGGGTTAATTGCTGAGATCAATATGTGGGTAATGTCAATTGGTTGTTTTTTAAATTAATGATAAACAGATTAGGTGTTTGGCTGCTGCATTATAC

mRNA sequence

ATGACAATGATTATCCGCCCTAATTCTGATCGCCGCCCACCCTCCCGTCGGCACCGCCACCGTGTTTCTTTCCGGCGGATCCACCAGATTGTACTTCGCCGGATCTCTACCCGCGTCGAAATTCCCAAATCCCCTGCCCACAACGAAGAAATTGTGCCCATGAACATGAATCGGATGATTCTCCACATTCAGAAAATTCGTGCCCTGAAACACGATTTCCAGATCTGTTCCATATGGAACCGCCAAAAGCTTAGTCCCAAATTCCGTGTTCATGAACATTACATGGATACAGAGGAGAATCAAGGCTATGGAGTTTGTTTGAAAATGCAGTGGCAAAGGCTGTATCCTTCATATCAGGGAGGTTTTCAGAAGAGTGGTGGTTTGGCCAGGAGCTATCATAATGGCTGTGGTATTGAAGGGTTTTGTGTATGCAGCATCAATCTCCACCAGTGTCAATGTATGGTTGGCTATGGCAAAGAAAAGTTCATTGTTGAGTGCTCCATTAATTACTCTCAGCAGCTTACATTAAACCGAAAGCGTCGAGTGACAGGAGAAGCAAAGCTGAATGGCACAAAACCAGCAAGGAGGATGCTTATGAATATGACAAGCAATAGCATCATCCCACACTGCTGGCTGAGGCTCTTCATTGTCATCAAATTTTTTAACTCTTCAAAACCAGTTAGCTAACAATTTATATATATACTACAAAAAGCTGCACTATTTTTCTTATAGTTTTTTGCTCACTTTGAACTCACATTCTGCAGTCATTGGCACAGTCTGTGAATCCTTTTGATGTGGTGAGTGGTGCTTTGTTGTGGGGGGTTGGTGTGTAAGTGGGGTTAATTGCTGAGATCAATATGTGGGTAATGTCAATTGGTTGTTTTTTAAATTAATGATAAACAGATTAGGTGTTTGGCTGCTGCATTATAC

Coding sequence (CDS)

ATGACAATGATTATCCGCCCTAATTCTGATCGCCGCCCACCCTCCCGTCGGCACCGCCACCGTGTTTCTTTCCGGCGGATCCACCAGATTGTACTTCGCCGGATCTCTACCCGCGTCGAAATTCCCAAATCCCCTGCCCACAACGAAGAAATTGTGCCCATGAACATGAATCGGATGATTCTCCACATTCAGAAAATTCGTGCCCTGAAACACGATTTCCAGATCTGTTCCATATGGAACCGCCAAAAGCTTAGTCCCAAATTCCGTGTTCATGAACATTACATGGATACAGAGGAGAATCAAGGCTATGGAGTTTGTTTGAAAATGCAGTGGCAAAGGCTGTATCCTTCATATCAGGGAGGTTTTCAGAAGAGTGGTGGTTTGGCCAGGAGCTATCATAATGGCTGTGGTATTGAAGGGTTTTGTGTATGCAGCATCAATCTCCACCAGTGTCAATGTATGGTTGGCTATGGCAAAGAAAAGTTCATTGTTGAGTGCTCCATTAATTACTCTCAGCAGCTTACATTAAACCGAAAGCGTCGAGTGACAGGAGAAGCAAAGCTGAATGGCACAAAACCAGCAAGGAGGATGCTTATGAATATGACAAGCAATAGCATCATCCCACACTGCTGGCTGAGGCTCTTCATTGTCATCAAATTTTTTAACTCTTCAAAACCAGTTAGCTAA

Protein sequence

MTMIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHIQKIRALKHDFQICSIWNRQKLSPKFRVHEHYMDTEENQGYGVCLKMQWQRLYPSYQGGFQKSGGLARSYHNGCGIEGFCVCSINLHQCQCMVGYGKEKFIVECSINYSQQLTLNRKRRVTGEAKLNGTKPARRMLMNMTSNSIIPHCWLRLFIVIKFFNSSKPVS

Homology

[Close]

BLAST of Lsi02G002250 vs. ExPASy TrEMBL
Match: A0A5A7P7A4 (Neuraminidase OS=Striga asiatica OX=4170 GN=STAS_04400 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 1   MTMIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMI 60
           +T IIR   DR PP RRH +R+   R+ QI   R+  RVEIP+   H+EEI P+ M  M 
Sbjct: 72  LTRIIRDEPDRDPPPRRHPYRIPLHRVDQIEPGRVLARVEIPEPLPHHEEIEPVQMQGMA 131

Query: 61  LHIQKIRALKHDFQ 75
           L     R L++D Q
Sbjct: 132 LCPDYARVLQNDLQ 145

[Close]

BLAST of Lsi02G002250 vs. ExPASy TrEMBL
Match: A0A5A7PXL8 (SecE/sec61-gamma protein transport protein OS=Striga asiatica OX=4170 GN=STAS_14045 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.5e-04
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 3  MIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILH 62
          +I+ PN  R PP  RH +RV   R+H+I++ R+  RVE+P+ P   EE  P+ ++R++  
Sbjct: 9  VILEPN--RGPPVPRHDYRVPLLRVHEIIVTRVPRRVEVPQPPPDREEREPVEVHRVVDP 68

Query: 63 IQKIRALKHDFQI 76
            + RALKH   +
Sbjct: 69 RDEARALKHHLDV 79

[Close]

BLAST of Lsi02G002250 vs. NCBI nr
Match: KAG7012142.1 (hypothetical protein SDJN02_24894, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-25
Identity = 97/254 (38.19%), Postives = 120/254 (47.24%), Query Frame = 0


Query: 4   IIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILHI 63
           I+RP+SD RP S RHR+ VS RRI +I+LRRI   +EIPKS A +EEIVPM+MN MILHI
Sbjct: 8   IVRPDSDGRPASGRHRYCVSLRRIDEIILRRIPGHIEIPKSSADDEEIVPMDMNWMILHI 67

Query: 64  QKIRALKHDFQICSIWNRQKLSPKFRVHE------------------------------- 123
           QK   LKHDFQIC + N Q  S KF VH                                
Sbjct: 68  QKTCPLKHDFQICPVCNFQNPSSKFCVHVVRQWVRTRVIINLRRFFWKIGRVGLSSRVPV 127

Query: 124 ---HYMDTEENQGYGV-----CLKMQWQRLYP----------SYQGGF------------ 183
               Y  +  N+G  V      L +Q    +P          SY   F            
Sbjct: 128 MRFQYGQSRTNEGLIVHRSKEALPVQTLARFPRWAILKVEAYSYDNSFMNCFRNITWVHR 187

Query: 184 -QKSGGLARSYHNGCGIEGFC-VCSINLHQCQCMVGYGKEKFIVECSINYSQQ------- 186
             K+    +   +   I  F  V SIN H CQC++GYG+EKFIVEC I+ SQQ       
Sbjct: 188 RSKAAEFVQKCRSKRSILHFWEVFSINFHHCQCVIGYGEEKFIVECCIDDSQQRKDIEVP 247

[Close]

BLAST of Lsi02G002250 vs. NCBI nr
Match: GER28592.1 (neuraminidase [Striga asiatica])

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-05
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 1   MTMIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMI 60
           +T IIR   DR PP RRH +R+   R+ QI   R+  RVEIP+   H+EEI P+ M  M 
Sbjct: 72  LTRIIRDEPDRDPPPRRHPYRIPLHRVDQIEPGRVLARVEIPEPLPHHEEIEPVQMQGMA 131

Query: 61  LHIQKIRALKHDFQ 75
           L     R L++D Q
Sbjct: 132 LCPDYARVLQNDLQ 145

[Close]

BLAST of Lsi02G002250 vs. NCBI nr
Match: GER37623.1 (secE/sec61-gamma protein transport protein [Striga asiatica])

HSP 1 Score: 55.1 bits (131), Expect = 9.4e-04
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 3  MIIRPNSDRRPPSRRHRHRVSFRRIHQIVLRRISTRVEIPKSPAHNEEIVPMNMNRMILH 62
          +I+ PN  R PP  RH +RV   R+H+I++ R+  RVE+P+ P   EE  P+ ++R++  
Sbjct: 9  VILEPN--RGPPVPRHDYRVPLLRVHEIIVTRVPRRVEVPQPPPDREEREPVEVHRVVDP 68

Query: 63 IQKIRALKHDFQI 76
            + RALKH   +
Sbjct: 69 RDEARALKHHLDV 79

The following BLAST results are available for this feature:

BLAST of Lsi02G002250 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G002250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7P7A4	1.4e-05	44.59	Neuraminidase OS=Striga asiatica OX=4170 GN=STAS_04400 PE=4 SV=1	[more]
A0A5A7PXL8	4.5e-04	38.36	SecE/sec61-gamma protein transport protein OS=Striga asiatica OX=4170 GN=STAS_14...	[more]

BLAST of Lsi02G002250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012142.1	1.5e-25	38.19	hypothetical protein SDJN02_24894, partial [Cucurbita argyrosperma subsp. argyro...	[more]
GER28592.1	2.9e-05	44.59	neuraminidase [Striga asiatica]	[more]
GER37623.1	9.4e-04	38.36	secE/sec61-gamma protein transport protein [Striga asiatica]	[more]

BLAST of Lsi02G002250 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G002250.1	Lsi02G002250.1	mRNA