Lsi02G001540 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G001540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transmembrane protein, putative
Location	chr02: 1273726 .. 1274022 (+)
RNA-Seq Expression	Lsi02G001540
Synteny	Lsi02G001540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCGCGTCATCGCCACCATTGTTACCTGACCTGCAGCAAACACCGGCCTCCGTCAGCGGCGGCGGCGCCTGGCATTCCTCTGGTTCTATTGGGCCATTCTTTGTGGTGATCTCTGTTTTAACTCTGCTTTCGATTATGTCTTGCTTTCTGGGCGGAATTTGCAGCCGCAGATATGAAGAAACGCCGTCACAGGGAAGAAATTTGTTGGGATTTTTGAAGAGGAAGTTGGAGAGGCCTTGTGTTGAAGACGTTGAGGTCGGTGTAAAAGGAAGAATGGAATTATGTGATTGA

mRNA sequence

ATGGCCACCGCGTCATCGCCACCATTGTTACCTGACCTGCAGCAAACACCGGCCTCCGTCAGCGGCGGCGGCGCCTGGCATTCCTCTGGTTCTATTGGGCCATTCTTTGTGGTGATCTCTGTTTTAACTCTGCTTTCGATTATGTCTTGCTTTCTGGGCGGAATTTGCAGCCGCAGATATGAAGAAACGCCGTCACAGGGAAGAAATTTGTTGGGATTTTTGAAGAGGAAGTTGGAGAGGCCTTGTGTTGAAGACGTTGAGGTCGGTGTAAAAGGAAGAATGGAATTATGTGATTGA

Coding sequence (CDS)

ATGGCCACCGCGTCATCGCCACCATTGTTACCTGACCTGCAGCAAACACCGGCCTCCGTCAGCGGCGGCGGCGCCTGGCATTCCTCTGGTTCTATTGGGCCATTCTTTGTGGTGATCTCTGTTTTAACTCTGCTTTCGATTATGTCTTGCTTTCTGGGCGGAATTTGCAGCCGCAGATATGAAGAAACGCCGTCACAGGGAAGAAATTTGTTGGGATTTTTGAAGAGGAAGTTGGAGAGGCCTTGTGTTGAAGACGTTGAGGTCGGTGTAAAAGGAAGAATGGAATTATGTGATTGA

Protein sequence

MATASSPPLLPDLQQTPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEETPSQGRNLLGFLKRKLERPCVEDVEVGVKGRMELCD

Homology

[Close]

BLAST of Lsi02G001540 vs. ExPASy TrEMBL
Match: A0A6J1C6U1 (uncharacterized protein LOC111008787 OS=Momordica charantia OX=3673 GN=LOC111008787 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.0e-25
Identity = 68/92 (73.91%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 1  MATASSPPLLPDLQQTPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRY 60
          MATASS PLLPD QQTPA    GG   SSGSIGPFF VISVLTLLSI+SCFLG ICSR  
Sbjct: 1  MATASSSPLLPDQQQTPA----GGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGS 60

Query: 61 EETPSQGRNLLGFLKRKLERPCVEDVEVGVKG 93
          EETP Q RN L  LK +L+R CV+DVEVGVKG
Sbjct: 61 EETPLQSRNCLRSLKGQLQRRCVKDVEVGVKG 88

[Close]

BLAST of Lsi02G001540 vs. ExPASy TrEMBL
Match: A0A072VIN4 (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25486805 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   MATASSPPLL-PDLQQTPASVS--GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICS 60
           MA+A+S  LL P  QQ+  ++S     AW SSGSIGPFF VI VLT+L+++SC+L  +C+
Sbjct: 1   MASAASSALLQPQQQQSGETISSPSSSAWKSSGSIGPFFAVIIVLTILAVLSCYLTRMCN 60

Query: 61  RRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGRMELCD 99
           RR E TP +   GR   G++KR+  R    DVEV GV  ++ +CD
Sbjct: 61  RR-EPTPLESIKGRGCFGWVKRRCRRCMSRDVEVGGVGAKVMVCD 104

[Close]

BLAST of Lsi02G001540 vs. ExPASy TrEMBL
Match: A0A396JCL6 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0307561 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   MATASSPPLL-PDLQQTPASVS--GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICS 60
           MA+A+S  LL P  QQ+  ++S     AW SSGSIGPFF VI VLT+L+++SC+L  +C+
Sbjct: 20  MASAASSALLQPQQQQSGETISSPSSSAWKSSGSIGPFFAVIIVLTILAVLSCYLTRMCN 79

Query: 61  RRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGRMELCD 99
           RR E TP +   GR   G++KR+  R    DVEV GV  ++ +CD
Sbjct: 80  RR-EPTPLESIKGRGCFGWVKRRCRRCMSRDVEVGGVGAKVMVCD 123

[Close]

BLAST of Lsi02G001540 vs. ExPASy TrEMBL
Match: A0A1S3EJH0 (uncharacterized protein LOC101512774 OS=Cicer arietinum OX=3827 GN=LOC101512774 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.7e-12
Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 0


Query: 1   MATASSPPLLPDLQQ-------TPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLG 60
           MATA+S  LL   QQ          S S   AW SSGSI PFF VI +LT+L+++SC+L 
Sbjct: 1   MATAASSSLLQPQQQQANSGEVVSTSSSSSSAWQSSGSIAPFFAVIIILTILAVLSCYLS 60

Query: 61  GICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGRMELCD 99
            +C+RR E TP +   GR  LG+LKR+       DVEV GV  ++ +CD
Sbjct: 61  RMCNRR-ELTPLESIKGRGCLGWLKRRCRECMCRDVEVGGVGAKVMVCD 108

[Close]

BLAST of Lsi02G001540 vs. ExPASy TrEMBL
Match: A0A2N9HK44 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39992 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.4e-12
Identity = 57/112 (50.89%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 1   MATASSPPLLPDLQQTPA--------SVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFL 60
           MAT SS   LP  QQ PA        +V     W SSGSIGPFF V+SVL LLSI+SC L
Sbjct: 1   MATTSSS--LPTAQQQPAGGTLTNPEAVQNTSVWQSSGSIGPFFAVMSVLILLSILSCML 60

Query: 61  GGICSRRYEETPS-----QGRNLLGFLKRKLERPCVE--DVEVGVKGRMELC 98
           G IC+R   ET S     +GR  LG++KRK  R C+   DVEVG+K  M +C
Sbjct: 61  GKICTR---ETVSPLESIKGRGCLGWVKRKFRR-CMPGGDVEVGIK-MMAIC 105

[Close]

BLAST of Lsi02G001540 vs. NCBI nr
Match: XP_022137289.1 (uncharacterized protein LOC111008787 [Momordica charantia])

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-25
Identity = 68/92 (73.91%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 1  MATASSPPLLPDLQQTPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRY 60
          MATASS PLLPD QQTPA    GG   SSGSIGPFF VISVLTLLSI+SCFLG ICSR  
Sbjct: 1  MATASSSPLLPDQQQTPA----GGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGS 60

Query: 61 EETPSQGRNLLGFLKRKLERPCVEDVEVGVKG 93
          EETP Q RN L  LK +L+R CV+DVEVGVKG
Sbjct: 61 EETPLQSRNCLRSLKGQLQRRCVKDVEVGVKG 88

[Close]

BLAST of Lsi02G001540 vs. NCBI nr
Match: XP_013463985.2 (uncharacterized protein LOC25486805 [Medicago truncatula] >RHN74195.1 hypothetical protein MtrunA17_Chr2g0307561 [Medicago truncatula])

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-12
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   MATASSPPLL-PDLQQTPASVS--GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICS 60
           MA+A+S  LL P  QQ+  ++S     AW SSGSIGPFF VI VLT+L+++SC+L  +C+
Sbjct: 20  MASAASSALLQPQQQQSGETISSPSSSAWKSSGSIGPFFAVIIVLTILAVLSCYLTRMCN 79

Query: 61  RRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGRMELCD 99
           RR E TP +   GR   G++KR+  R    DVEV GV  ++ +CD
Sbjct: 80  RR-EPTPLESIKGRGCFGWVKRRCRRCMSRDVEVGGVGAKVMVCD 123

[Close]

BLAST of Lsi02G001540 vs. NCBI nr
Match: KEH38020.1 (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-12
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   MATASSPPLL-PDLQQTPASVS--GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICS 60
           MA+A+S  LL P  QQ+  ++S     AW SSGSIGPFF VI VLT+L+++SC+L  +C+
Sbjct: 1   MASAASSALLQPQQQQSGETISSPSSSAWKSSGSIGPFFAVIIVLTILAVLSCYLTRMCN 60

Query: 61  RRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGRMELCD 99
           RR E TP +   GR   G++KR+  R    DVEV GV  ++ +CD
Sbjct: 61  RR-EPTPLESIKGRGCFGWVKRRCRRCMSRDVEVGGVGAKVMVCD 104

[Close]

BLAST of Lsi02G001540 vs. NCBI nr
Match: XP_012575091.1 (uncharacterized protein LOC101512774 [Cicer arietinum])

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 0


Query: 1   MATASSPPLLPDLQQ-------TPASVSGGGAWHSSGSIGPFFVVISVLTLLSIMSCFLG 60
           MATA+S  LL   QQ          S S   AW SSGSI PFF VI +LT+L+++SC+L 
Sbjct: 1   MATAASSSLLQPQQQQANSGEVVSTSSSSSSAWQSSGSIAPFFAVIIILTILAVLSCYLS 60

Query: 61  GICSRRYEETPSQ---GRNLLGFLKRKLERPCVEDVEV-GVKGRMELCD 99
            +C+RR E TP +   GR  LG+LKR+       DVEV GV  ++ +CD
Sbjct: 61  RMCNRR-ELTPLESIKGRGCLGWLKRRCRECMCRDVEVGGVGAKVMVCD 108

[Close]

BLAST of Lsi02G001540 vs. NCBI nr
Match: KAF2298856.1 (hypothetical protein GH714_028346 [Hevea brasiliensis])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 7   PPLLPDLQQ--TPASVS-GGGAWHSSGSIGPFFVVISVLTLLSIMSCFLGGICSRRYEET 66
           PP   ++QQ   P +VS    AWHSSGSIGPFF VISVL +L+I+SCF+G ICSRR    
Sbjct: 14  PPADGEIQQPSVPVAVSASSSAWHSSGSIGPFFGVISVLAVLAILSCFVGRICSRRAVAP 73

Query: 67  PSQG---RNLLGFLKRKLERPCVEDVEVG 90
           P      R  LG++KR+       DVEVG
Sbjct: 74  PPDNIKHRGYLGWMKRRSRWCWGGDVEVG 102

[Close]

BLAST of Lsi02G001540 vs. TAIR 10
Match: AT1G74055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 44/119 (36.97%), Postives = 57/119 (47.90%), Query Frame = 0


Query: 1   MATASSPPLLPDLQQTPASVSGGGA------------------WHSSGSIGPFFVVISVL 60
           MA++SS   L  +QQ P    GG                     +SS SIGPFF VISVL
Sbjct: 3   MASSSSSSSLFPIQQQPQQQLGGNEITPMATNANLIAAPNAPNHYSSSSIGPFFAVISVL 62

Query: 61  TLLSIMSCFLGGICSRRYEET----------PSQGRNLLGFLKRKLERPCVEDVEVGVK 92
            +L+++SCFLG  C+R  + T            +   LLG+L+RK  R    DVE G K
Sbjct: 63  IILAVLSCFLGRFCARSRQRTGLVAEVNPLEMIKSGGLLGWLRRKWRRCLAGDVEAGAK 121

The following BLAST results are available for this feature:

BLAST of Lsi02G001540 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G001540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6U1	2.0e-25	73.91	uncharacterized protein LOC111008787 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A072VIN4	3.3e-12	47.62	Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25486805 PE=4 ...	[more]
A0A396JCL6	3.3e-12	47.62	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0307561 ...	[more]
A0A1S3EJH0	5.7e-12	45.87	uncharacterized protein LOC101512774 OS=Cicer arietinum OX=3827 GN=LOC101512774 ...	[more]
A0A2N9HK44	7.4e-12	50.89	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39992 PE=4 SV=1	[more]

BLAST of Lsi02G001540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137289.1	4.1e-25	73.91	uncharacterized protein LOC111008787 [Momordica charantia]	[more]
XP_013463985.2	6.9e-12	47.62	uncharacterized protein LOC25486805 [Medicago truncatula] >RHN74195.1 hypothetic...	[more]
KEH38020.1	6.9e-12	47.62	transmembrane protein, putative [Medicago truncatula]	[more]
XP_012575091.1	1.2e-11	45.87	uncharacterized protein LOC101512774 [Cicer arietinum]	[more]
KAF2298856.1	1.3e-10	51.69	hypothetical protein GH714_028346 [Hevea brasiliensis]	[more]

BLAST of Lsi02G001540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74055.1	1.1e-10	36.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR33429:SF23	OS02G0709350 PROTEIN	coord: 1..91
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G001540.1	Lsi02G001540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane