Lsi02G001480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G001480
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGTPase IMAP family member 1, putative
Locationchr02: 1222829 .. 1224894 (+)
RNA-Seq ExpressionLsi02G001480
SyntenyLsi02G001480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAAGTTCTAAAAATGTAAATTATATAATAATGGGCTATCCTATTCCAACTTAATTTATATTATAGTATGTGATAATAAAAAGGTTTAATTTATATATTTTGTTTTGGTTTCAGGGCAAATTTTTTTTTTAATGACCAATTAAGTTAATAGAAATGACGAAAGACAACGCAGGCTAATTACTAATTAGTTAACATTTTGAAGAGATTTGGGTTAGTTCAAACTCAAGGTGATGTGGAAATGGCTAATCACAATCGAGCTTGTTTAATTATACTTTAGAAATGCAATGGAGCAGGCCAAATTGGGTTATTATTAGGGCTTTTTAATAACAAACTCGGAATGAAAGACACCCAATTATCGCTTTTTTCGTCTCTTTTTAAAAATAAAGAAATAAGGAACCAATTATCAAATTTTCATTATAAAATCTGCTGACTATATATGACCAATTGCAATATGTTAACTATTTATATTTTATTTAATAATTTTGATGTAATTTTAGTATTTTTTTATTTATATTCTTTTTATGGTATTTTAAGTAGGATTATTTATGTTTTTTATCATGAACTATGATGCATTAGGATTTCTTTTATTGAGAGACTATTTAAAGTTTGACCATTGAGAGACTTTTTTTTTTTTTTTTTAATAACAGAATACTAGAGGGAGGGATCAGGAGGTGCACCGGGACATCTCAACCAGGTTGACACCTCCTTAGCACCCTCATCATGCCTTGATACTAATAGCGATATCATTCATATAACAAAAAGTTTGTACAAAGAGCTAGAGGATAGCTCTGTAACAAGAGGAGGTTGGTCAGGAAAATGGGCTAAAAAAACAATTCCAATTTGGGAATGATAATTTTTCTTTTAAGTTGATGACGTCATCAACTCAACATTTGCAATTCTTGATCTAGGGTTGCATGCGAAAGCATTTAGGTAAGATTGATCAACTTGCTTGTAGCCTTGAGTAGAGAATTAGTTCTCCTTATGTCTTGGATCAAAAGCTAATCTAAATCTAATTCTTCTCTTTAGATTGACATCAAATTGATTTGAGAGTTTTAGAATTTTATATTAAAGAGATAAATGAGTTCCTAATTTTTCGAATCGGTAGGATTTTTCATATCAGAATTTGTGAGACAAGATTGTTGAGATACTTTGTTACAAAATGAAGTGAATCTAAATTAATATGACCAAAGCAGATTCTAGAAAGAAAAAACAAATCTTATTAATTCGAGTCATATTAATATTTAATTGAGATAATCCACGCCAATGTTGACCCATTTTAAAGGAACGGTTAAACCAAAAACATCACCACCCCAACTTTATAATATTCTTATTATTATCTTCCAAACAAAGTTAAATTTATTTAATCGAATATTTTACAATTGAAAGTAATAATTGGTTACTTCTCATTAAAAAGCATATTAATAATCCACATTGAACAACTCGTTTTTGATTTGCCATTTACACATACGACCCTTCCAAAGGGTAATTTAACAAACAAAAATGTCCAAATTACTTTACACTAAGTTAAATTATAAAACTTATAATTTAAACTATCACATGCTATTATATAAACTTAGCAATTTGAGGGAGAGGGAACTCACAATTAATAGTATTACCATTCTCACCTTGAAAATCATGATCATTCTTATTAGAAGAATTATAAGTGCTATCAACAACTTTTTTAGGCTAATTACAAACTTCTTTAACACTTCAATATTATTCCAATCCCAATCCAATGACCTAGAAACGGAACCTCGTCACGAGCCGTTGGGCTCATGGCCGCGAACCGCGGCGGAGATAGTAATGCAGTGGGAAAAATTGATGGTTACATTTTGTGTAGGCTCAGCCATTGCCATAGCCACCGTATCTCTTCAAATTGAAACCAGGCTCTCTTTAATGTTTCATTTTCTGTCAGTTGTGTTAATGGGTTGCTTTGTTTTTATAGCCTCAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTATTGTTTTGGTGGGTTTTGGTTTGTTACTGCCTTCTTCATTGCCATTGCCATTCCTTATACATTT

mRNA sequence

ATGGATAAAAAATGCAATGGAGCAGGCCAAATTGGGCTAATTACAAACTTCTTTAACACTTCAATATTATTCCAATCCCAATCCAATGACCTAGAAACGGAACCTCGTCACGAGCCGTTGGGCTCATGGCCGCGAACCGCGGCGGAGATAGTAATGCAGTGGGAAAAATTGATGGTTACATTTTGTGTAGGCTCAGCCATTGCCATAGCCACCGTATCTCTTCAAATTGAAACCAGGCTCTCTTTAATGTTTCATTTTCTGTCAGTTGTGTTAATGGGTTGCTTTGTTTTTATAGCCTCAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTATTGTTTTGGTGGGTTTTGGTTTGTTACTGCCTTCTTCATTGCCATTGCCATTCCTTATACATTT

Coding sequence (CDS)

ATGGATAAAAAATGCAATGGAGCAGGCCAAATTGGGCTAATTACAAACTTCTTTAACACTTCAATATTATTCCAATCCCAATCCAATGACCTAGAAACGGAACCTCGTCACGAGCCGTTGGGCTCATGGCCGCGAACCGCGGCGGAGATAGTAATGCAGTGGGAAAAATTGATGGTTACATTTTGTGTAGGCTCAGCCATTGCCATAGCCACCGTATCTCTTCAAATTGAAACCAGGCTCTCTTTAATGTTTCATTTTCTGTCAGTTGTGTTAATGGGTTGCTTTGTTTTTATAGCCTCAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTATTGTTTTGGTGGGTTTTGGTTTGTTACTGCCTTCTTCATTGCCATTGCCATTCCTTATACATTT

Protein sequence

MDKKCNGAGQIGLITNFFNTSILFQSQSNDLETEPRHEPLGSWPRTAAEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYTF
Homology
BLAST of Lsi02G001480 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 0

Query: 48  AEIVMQWEKLMVTFCVGSAIAIATVSLQIET--RLSLMFHFLSVVLMGCFVFIASAKVIN 107
           AE+V +W++++V  CV SAI IATVS+QIET  +L   F FLS+V++ CF F+  AK+  
Sbjct: 41  AEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTK 100

Query: 108 VKQQRVSQILYCFGGFWFVTAFFIAIAIPY 136
              + VS+ILYC GGF  VTAFFIA AIP+
Sbjct: 101 PIFKTVSKILYCVGGFLGVTAFFIATAIPF 130

BLAST of Lsi02G001480 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-12
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 0

Query: 47  AAEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINV 106
           AAE+V +W+ +++ FCV SAI IATVS+ I+T L   F  LS+ ++ CFV +  A++IN 
Sbjct: 26  AAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINS 85

Query: 107 KQQRVSQILYCFGGFWFVTAFFIAIAIPY 136
             + +S+ILYC GG  + ++ FIA AIPY
Sbjct: 86  IFETLSKILYCVGGLLYASSCFIATAIPY 114

BLAST of Lsi02G001480 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.9e-11
Identity = 41/88 (46.59%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 48  AEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINVK 107
           AE+V + +++++ FC+ SAI IATVS+Q +T+L   F FLS+ ++ CF+ +  A++I+  
Sbjct: 28  AEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFARMISSI 87

Query: 108 QQRVSQILYCFGGFWFVTAFFIAIAIPY 136
            + +S+ILYCFGGF   T  FIA AIPY
Sbjct: 88  FKTLSKILYCFGGFLCATCCFIATAIPY 115

BLAST of Lsi02G001480 vs. ExPASy TrEMBL
Match: A0A7N2R866 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.3e-10
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 0

Query: 52  MQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINVKQQRV 111
           M+W ++++ FC+ SA+ IA +S+Q+ T+L  +FH  S+ ++  F  +  +K IN K  R 
Sbjct: 80  MEWAEIVIAFCLASAVDIAILSVQVHTQLPALFHLFSLAILLAFASVVVSKFINPKFLRA 139

Query: 112 SQILYCFGGFWFVTAFFIAIAIPYTF 138
           +Q+L  FG F+ VTAFFIAI IP+ F
Sbjct: 140 AQVLEKFGVFFTVTAFFIAITIPFPF 165

BLAST of Lsi02G001480 vs. ExPASy TrEMBL
Match: A0A7N2M5A3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = 0

Query: 38  EPLGSWPRTAAEIV--------MQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSV 97
           +P G+ P  AA +V        M W ++M+ FC+ SAI IA VS+Q+  +LS  FH LS+
Sbjct: 55  DPGGAAPAEAAGLVVVHRHQIHMDWTEIMIGFCLASAIDIALVSVQVHAQLSATFHLLSL 114

Query: 98  VLMGCFVFIASAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPY 136
             +  F     ++ I  K    +Q+L   G F+ VTAFFIAIAIP+
Sbjct: 115 AFLFAFACFFVSEFIESKFLVTAQVLQKLGVFFTVTAFFIAIAIPF 160

BLAST of Lsi02G001480 vs. NCBI nr
Match: KAG6584385.1 (hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 0

Query: 44  PRTAAEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKV 103
           P +A E++MQWE +MVTFC+G+AIAIATVS+QI+T+LS MF FLS  LMGCF F  SAK+
Sbjct: 52  PVSAVEMLMQWENMMVTFCMGTAIAIATVSVQIQTKLSPMFQFLSGALMGCFCFTTSAKL 111

Query: 104 INVKQQRVSQILYCFGGFWFVTAFFIAIAIPYTF 138
           I  K QRVS ILY  GGF FVTAFFIAIAIPY F
Sbjct: 112 I--KHQRVSLILYFLGGFCFVTAFFIAIAIPYAF 143

BLAST of Lsi02G001480 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-15
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 0

Query: 47  AAEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINV 106
           AAE+V +W+ ++V FCV SAIAIATVS+QIE +L  +F+FLS+ L+ CF F+A  K+   
Sbjct: 36  AAEMVEEWKDMIVAFCVSSAIAIATVSVQIEKKLPRVFNFLSLTLLLCFGFVAFGKMTKS 95

Query: 107 KQQRVSQILYCFGGFWFVTAFFIAIAIPY 136
             +RVS+ILYC GG   VTA FIA AIPY
Sbjct: 96  ILKRVSRILYCVGGVLGVTALFIASAIPY 124

BLAST of Lsi02G001480 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 7.3e-12
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 0

Query: 47  AAEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINV 106
           AAE+V +W+ +++ FCV SAI IATVS+ I+T L   F  LS+ ++ CFV +  A++IN 
Sbjct: 12  AAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINS 71

Query: 107 KQQRVSQILYCFGGFWFVTAFFIAIAIPY 136
             + +S+ILYC GG  + ++ FIA AIPY
Sbjct: 72  IFETLSKILYCVGGLLYASSCFIATAIPY 100

BLAST of Lsi02G001480 vs. NCBI nr
Match: KAF3947053.1 (hypothetical protein CMV_026760 [Castanea mollissima])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-07
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 53  QWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINVKQQRVS 112
           +W +L VTFC+ SAI IA VS+Q+ ++LS  FH LS+ ++  F     +K I  K    +
Sbjct: 59  EWTELTVTFCLASAIDIALVSVQVNSQLSTAFHLLSLTILLAFASFVVSKFIKFKFLVSA 118

Query: 113 QILYCFGGFWFVTAFFIAIAIPY 136
           Q+L  FG F+ +TAFF+AI IP+
Sbjct: 119 QVLENFGVFFTMTAFFMAITIPF 141

BLAST of Lsi02G001480 vs. NCBI nr
Match: KAF3947054.1 (hypothetical protein CMV_026761 [Castanea mollissima])

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-07
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 0

Query: 38  EPLGSWPRTAA--------EIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSV 97
           +P G+ P  AA        +I M W ++M+ FC+ SAI IA VS+Q++ +LS  FH LS+
Sbjct: 55  DPGGAAPVEAAVSVVVHRHQIQMDWTEIMIGFCLASAIDIALVSVQVQAQLSATFHLLSL 114

Query: 98  VLMGCFVFIASAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPY 136
            ++  F     ++ I  K    +Q+L   G F+ VTAFF+AI IP+
Sbjct: 115 AILFAFACFFVSEFIKSKFLVTAQVLQKLGIFFTVTAFFMAITIPF 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQB61.1e-1354.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1[more]
A0A0A0LSX43.6e-1247.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1[more]
A0A0A0LCY23.9e-1146.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1[more]
A0A7N2R8663.3e-1043.02Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A7N2M5A32.4e-0840.57Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6584385.11.1e-2370.21hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572911.12.4e-1557.30hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652531.17.3e-1247.19hypothetical protein Csa_013077, partial [Cucumis sativus][more]
KAF3947053.11.9e-0744.58hypothetical protein CMV_026760 [Castanea mollissima][more]
KAF3947054.12.4e-0738.68hypothetical protein CMV_026761 [Castanea mollissima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34741:SF2IMAP FAMILY MEMBER 1, PUTATIVE-RELATEDcoord: 44..136
NoneNo IPR availablePANTHERPTHR34741IMAP FAMILY MEMBER 1, PUTATIVE-RELATEDcoord: 44..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G001480.1Lsi02G001480.1mRNA