Lsi02G001030 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G001030
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLYR motif-containing protein 4
Locationchr02: 843964 .. 844230 (+)
RNA-Seq ExpressionLsi02G001030
SyntenyLsi02G001030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTCCATCTAGGTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGCACCATTGATGCCTTCCGAGAAAATCAGAGCCTCTCCGACGCTTCATCCATCTCCTCCGCCTACGCCGGCGGAAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGGCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCGACCTTTGA

mRNA sequence

ATGGCAACTCCATCTAGGTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGCACCATTGATGCCTTCCGAGAAAATCAGAGCCTCTCCGACGCTTCATCCATCTCCTCCGCCTACGCCGGCGGAAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGGCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCGACCTTTGA

Coding sequence (CDS)

ATGGCAACTCCATCTAGGTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGCACCATTGATGCCTTCCGAGAAAATCAGAGCCTCTCCGACGCTTCATCCATCTCCTCCGCCTACGCCGGCGGAAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGGCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCGACCTTTGA

Protein sequence

MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGKAQLEVAKRQGLVYSLYAPKVKSIMDVDL
Homology
BLAST of Lsi02G001030 vs. ExPASy Swiss-Prot
Match: B5FZA8 (LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-11
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MA  SR+++L L+R+LLR +++F  YN R Y  RR  DAFREN++++D+  I       K
Sbjct: 1  MAASSRAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAK 60

Query: 61 AQLEVAKRQGLVYSLYA 78
          A LEV +RQG +  +YA
Sbjct: 61 ANLEVIQRQGTIDHMYA 77

BLAST of Lsi02G001030 vs. ExPASy Swiss-Prot
Match: Q9HD34 (LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MA  SR+++LSL+R++LR +++F  YN R Y  RR  DAFREN+++ D   I +     K
Sbjct: 1  MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60

Query: 61 AQLEVAKRQGLVYSLYA 78
            L V +RQ  +  LY+
Sbjct: 61 RDLGVIRRQVHIGQLYS 77

BLAST of Lsi02G001030 vs. ExPASy Swiss-Prot
Match: Q8K215 (LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-08
Identity = 30/77 (38.96%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MA  SR+++L L+R+++R ++ F  YN R Y  RR  DAFREN+++ D   I +     K
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQGLVYSLYA 78
            LE+ +RQ  +  LY+
Sbjct: 61 RDLEIIRRQVHIGQLYS 77

BLAST of Lsi02G001030 vs. ExPASy Swiss-Prot
Match: B5XD90 (LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-07
Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 7  SEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGKAQLEVA 66
          +++LSL+R L++ + +FP YN R Y  RR  DAFR N+S+ D   +      G+  L++ 
Sbjct: 6  AQVLSLYRKLMKESNKFPSYNYRTYALRRVQDAFRANRSVEDPKMVEQLLNQGRDNLDMI 65

Query: 67 KRQGLVYSLYAPKVKSIMD 86
          +RQ  +  +Y P  K+I++
Sbjct: 66 RRQVAIGKMY-PTQKTIVE 83

BLAST of Lsi02G001030 vs. ExPASy Swiss-Prot
Match: Q0VCG0 (LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-07
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MA  SR+++L L+R++LR +++F  YN R Y  RR  DAFREN+++ D   I +     K
Sbjct: 1  MAASSRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQGLVYSLYA 78
            L + +RQ  +  +Y+
Sbjct: 61 RDLGIIRRQVHIGQMYS 77

BLAST of Lsi02G001030 vs. ExPASy TrEMBL
Match: A0A6J1C8A4 (LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.2e-34
Identity = 82/88 (93.18%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MATPSRSEILSLFRSLLRTARQF DYNIREYTKRR IDAFREN+SLSD SSISSAYAGGK
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQGLVYSLYAPKVKSIMDVDL 89
          AQLEVAKRQ LVYSLYAPKVKSIMDV L
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVKL 88

BLAST of Lsi02G001030 vs. ExPASy TrEMBL
Match: A0A0A0LST7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.1e-33
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MATPS SEILSLFRSLLRTARQFPDYNIREY KRRTID+FRENQ+LSDASSISS YAGG+
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQGLVYSLYAPKVKSIMDVD 88
          AQLEVAKRQ +VYSLYAPKVKSIMDV+
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVN 87

BLAST of Lsi02G001030 vs. ExPASy TrEMBL
Match: A0A251UU63 (Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0157171 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.8e-29
Identity = 67/86 (77.91%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MATPSRSEIL+LFRSLLR+ARQFPDYNIREYTKRRTIDAFR N++LS+ SSI++A++ G+
Sbjct: 1  MATPSRSEILTLFRSLLRSARQFPDYNIREYTKRRTIDAFRHNKTLSEPSSIAAAFSDGQ 60

Query: 61 AQLEVAKRQGLVYSLYAPKVKSIMDV 87
          +QL+VAKRQ +VYSLYAPK+KSIMD+
Sbjct: 61 SQLQVAKRQAVVYSLYAPKIKSIMDI 86

BLAST of Lsi02G001030 vs. ExPASy TrEMBL
Match: A0A2J6KBZ0 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X22101 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.6e-28
Identity = 64/84 (76.19%), Postives = 80/84 (95.24%), Query Frame = 0

Query: 3  TPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGKAQ 62
          TPSR+EI++LFRSLLR+ARQFPDYNIREYTKRRTIDAFR+N++LS+ SSI++A+  GK+Q
Sbjct: 7  TPSRTEIIALFRSLLRSARQFPDYNIREYTKRRTIDAFRDNKTLSEPSSIAAAFTDGKSQ 66

Query: 63 LEVAKRQGLVYSLYAPKVKSIMDV 87
          L+VAKRQ +VYSLYAPK+KSIMD+
Sbjct: 67 LQVAKRQAVVYSLYAPKIKSIMDI 90

BLAST of Lsi02G001030 vs. ExPASy TrEMBL
Match: A0A1S3XFP4 (LYR motif-containing protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107764517 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 63/87 (72.41%), Postives = 80/87 (91.95%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MA+PSR E+L+LFRSLL+TARQFPDYNIREYTKRRTID FR+N+ LSD S +++A++ G+
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDGFRQNKDLSDPSKVAAAFSEGR 60

Query: 61 AQLEVAKRQGLVYSLYAPKVKSIMDVD 88
          AQLEVAKRQ +VYSLYAPKVKS+M+++
Sbjct: 61 AQLEVAKRQAVVYSLYAPKVKSVMELN 87

BLAST of Lsi02G001030 vs. NCBI nr
Match: XP_038894896.1 (LYR motif-containing protein 4 [Benincasa hispida])

HSP 1 Score: 161.8 bits (408), Expect = 2.7e-36
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MATPSRSE+LSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK
Sbjct: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60

Query: 61 AQLEVAKRQGLVYSLYAPKVKSIMDVDL 89
          AQLEVAKRQ LVYSLYAPKVKSIMDV+L
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVNL 88

BLAST of Lsi02G001030 vs. NCBI nr
Match: KAG6607477.1 (LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037133.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.5 bits (389), Expect = 4.4e-34
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MA PSRSEIL+LFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSD SSISS YAGGK
Sbjct: 1  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGK 60

Query: 61 AQLEVAKRQGLVYSLYAPKVKSIMDVD 88
          AQLEVAKRQ LVYSLYAPKVKSIMDV+
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 87

BLAST of Lsi02G001030 vs. NCBI nr
Match: XP_022137452.1 (LYR motif-containing protein 4 [Momordica charantia])

HSP 1 Score: 152.9 bits (385), Expect = 1.3e-33
Identity = 82/88 (93.18%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MATPSRSEILSLFRSLLRTARQF DYNIREYTKRR IDAFREN+SLSD SSISSAYAGGK
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQGLVYSLYAPKVKSIMDVDL 89
          AQLEVAKRQ LVYSLYAPKVKSIMDV L
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVKL 88

BLAST of Lsi02G001030 vs. NCBI nr
Match: KGN64034.1 (hypothetical protein Csa_014098 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 6.3e-33
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MATPS SEILSLFRSLLRTARQFPDYNIREY KRRTID+FRENQ+LSDASSISS YAGG+
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQGLVYSLYAPKVKSIMDVD 88
          AQLEVAKRQ +VYSLYAPKVKSIMDV+
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVN 87

BLAST of Lsi02G001030 vs. NCBI nr
Match: KAF5807263.1 (putative complex 1 LYR protein [Helianthus annuus])

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 67/86 (77.91%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MATPSRSEIL+LFRSLLR+ARQFPDYNIREYTKRRTIDAFR N++LS+ SSI++A++ G+
Sbjct: 1  MATPSRSEILTLFRSLLRSARQFPDYNIREYTKRRTIDAFRHNKTLSEPSSIAAAFSDGQ 60

Query: 61 AQLEVAKRQGLVYSLYAPKVKSIMDV 87
          +QL+VAKRQ +VYSLYAPK+KSIMD+
Sbjct: 61 SQLQVAKRQAVVYSLYAPKIKSIMDI 86

BLAST of Lsi02G001030 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 97.4 bits (241), Expect = 5.9e-21
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 0

Query: 5  SRSEILSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGKAQLE 64
          S SE+LSL R+LLR  RQFPDYNIREY+KRRT+D FR N++L+D S ++ AYA  K QL 
Sbjct: 3  SSSEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLF 62

Query: 65 VAKRQGLVYSLYAPKVKSIMDVDL 89
          VA+R   VY  Y PK K+IM+V L
Sbjct: 63 VAERVLKVYLAYPPKTKNIMEVKL 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
B5FZA84.1e-1145.45LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=... [more]
Q9HD342.5e-0841.56LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1[more]
Q8K2154.3e-0838.96LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1[more]
B5XD902.1e-0735.44LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1[more]
Q0VCG02.8e-0737.66LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1C8A46.2e-3493.18LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE... [more]
A0A0A0LST73.1e-3389.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1[more]
A0A251UU637.8e-2977.91Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g015... [more]
A0A2J6KBZ08.6e-2876.19Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X22101 PE=4 SV=1[more]
A0A1S3XFP41.1e-2772.41LYR motif-containing protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107764517 PE=4... [more]
Match NameE-valueIdentityDescription
XP_038894896.12.7e-3696.59LYR motif-containing protein 4 [Benincasa hispida][more]
KAG6607477.14.4e-3493.10LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] ... [more]
XP_022137452.11.3e-3393.18LYR motif-containing protein 4 [Momordica charantia][more]
KGN64034.16.3e-3389.66hypothetical protein Csa_014098 [Cucumis sativus][more]
KAF5807263.11.6e-2877.91putative complex 1 LYR protein [Helianthus annuus][more]
Match NameE-valueIdentityDescription
AT5G61220.15.9e-2160.71LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 8..64
e-value: 8.9E-19
score: 67.3
NoneNo IPR availablePANTHERPTHR47158OS08G0239000 PROTEINcoord: 1..86
NoneNo IPR availablePANTHERPTHR47158:SF1OS08G0239000 PROTEINcoord: 1..86
NoneNo IPR availableCDDcd20264Complex1_LYR_LYRM4coord: 8..76
e-value: 4.62325E-22
score: 79.1005

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G001030.1Lsi02G001030.1mRNA