Lsi02G000760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G000760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Disulfide bond formation protein B 2, putative
Location	chr02: 659986 .. 661530 (-)
RNA-Seq Expression	Lsi02G000760
Synteny	Lsi02G000760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCACTTCCCAAGTTTTCATCTTTCATTTTCCAAAGAGAATCCTAAGCTTTAATTAAAAACCCTGTCAAAATTAACATACAAACAAACCATCTCCATATAAAATGTTCTTGTTACTATCACTTTCTTTTTGACTTTGTGTCTTACAATCTTATAAATTGCCTTCTAGCTAAACCATCCATCAAACACATTTTCTTTTTTCCCCCCCTATACCCATCAGCTCTGGGATTTCTTATATAAATACCTTCATTCTCTTCTTCTGCTTTGAAGCAGAGCAGCAAGTTTCATCATCAATGGCAGCAGCCACTCATTTCCTTCGTTTACTTGTCATATTCTTGGGACTTCATAACCTTCTCTCTTCCAATGCTGTCCCAACTTCAAGTAAGCCTCTCAAATCAATCTCTTTTCTCTTCTTTTTTCTTTTTTTTCTTTTTTTTTTCTTTCTTCTTCTTGCAAAATGAAACTAAACACTTCTGATCTGATTCTGTAGGAAGTGTCAGCCTCTTGCATGGATCTCATCCATCTCTTCATGTTTCAAGCAACACCCACATGGTATATTACATTATCCATCAACCTCAATCTCATTATCCCTACAAGGTTTTAGCTTTCGTGTTAATTTAACATAACATCAGAGCATGAAATTATGTGTTGAATCTCCGTATTGTCCTTTCTTCTCGATGCGTTAAGAAATCAACAATCAAAGATGAACAAACAACATACAATAATAGAGAATCGAGACACATATATACGTGGTTCAGTAACAGTGTGTTAGTTATGTCCATGGAGAGGGAGAGATCAGTTTTATTAGAGAGAAATTTTAAGGTTATAGAGTCAGAAGTAACCTCAATAGGGCTAGAGAGTTTATATAACACATTCCTCTAAACTCTAGGGCCAAAATTATAAATAGTGTAAATAACGAATACAACTTAGGTTTCGAGAGCATTGCCTCCGTATTTAGTCGTTCTAAACACCAAATAATAGATTCAAGATATTTCAACAACTAGCAATAACCATAAGGTTTTGAAAATGGGAGTGTTACAGGAATAAATTTATCGTAACTTATCTGTTTATGTCGTTGAGATTTAAACATGGAAGGTTTCTTGTTTATGCAGGTGACTGCAACAGAGAAAGAAGTGAGCCATGGAAGAATGGTTGTGGCATTAAATGACTATCCAGGGTCAGGAGCCAACAATCGTCACACACCAAGGCCACAATTTAGGGGATGTGCTGATTGTTGATTAGATTTTACATTACATATTTTGGGGATTGGTTGGGCTTTATATTTATATGATATATTGGTTTGAAAATATCTATCTATCTATGATTATATTATATGCATTATATGGGGAATATGGAAGCAGGGTTTGAGCTTCTTCATCACTCTATTAAGCTGTTGAAAAGCTGAGGAAAGAGATGGGTAGAGAAATTTATGAGATTAGGTGAAAAATGAGTACCAAAAATGTGTACTTTTGTAAAACAAAGAGACACTATTCAGTAATATATAATTTTGAGGGCTGTAATTAAAGCCATTGCAACTGTTTATTAAA

mRNA sequence

CCCACTTCCCAAGTTTTCATCTTTCATTTTCCAAAGAGAATCCTAAGCTTTAATTAAAAACCCTGTCAAAATTAACATACAAACAAACCATCTCCATATAAAATGTTCTTGTTACTATCACTTTCTTTTTGACTTTGTGTCTTACAATCTTATAAATTGCCTTCTAGCTAAACCATCCATCAAACACATTTTCTTTTTTCCCCCCCTATACCCATCAGCTCTGGGATTTCTTATATAAATACCTTCATTCTCTTCTTCTGCTTTGAAGCAGAGCAGCAAGTTTCATCATCAATGGCAGCAGCCACTCATTTCCTTCGTTTACTTGTCATATTCTTGGGACTTCATAACCTTCTCTCTTCCAATGCTGTCCCAACTTCAAGAAGTGTCAGCCTCTTGCATGGATCTCATCCATCTCTTCATGTTTCAAGCAACACCCACATGGTGACTGCAACAGAGAAAGAAGTGAGCCATGGAAGAATGGTTGTGGCATTAAATGACTATCCAGGGTCAGGAGCCAACAATCGTCACACACCAAGGCCACAATTTAGGGGATGTGCTGATTGTTGATTAGATTTTACATTACATATTTTGGGGATTGGTTGGGCTTTATATTTATATGATATATTGGTTTGAAAATATCTATCTATCTATGATTATATTATATGCATTATATGGGGAATATGGAAGCAGGGTTTGAGCTTCTTCATCACTCTATTAAGCTGTTGAAAAGCTGAGGAAAGAGATGGGTAGAGAAATTTATGAGATTAGGTGAAAAATGAGTACCAAAAATGTGTACTTTTGTAAAACAAAGAGACACTATTCAGTAATATATAATTTTGAGGGCTGTAATTAAAGCCATTGCAACTGTTTATTAAA

Coding sequence (CDS)

ATGGCAGCAGCCACTCATTTCCTTCGTTTACTTGTCATATTCTTGGGACTTCATAACCTTCTCTCTTCCAATGCTGTCCCAACTTCAAGAAGTGTCAGCCTCTTGCATGGATCTCATCCATCTCTTCATGTTTCAAGCAACACCCACATGGTGACTGCAACAGAGAAAGAAGTGAGCCATGGAAGAATGGTTGTGGCATTAAATGACTATCCAGGGTCAGGAGCCAACAATCGTCACACACCAAGGCCACAATTTAGGGGATGTGCTGATTGTTGA

Protein sequence

MAAATHFLRLLVIFLGLHNLLSSNAVPTSRSVSLLHGSHPSLHVSSNTHMVTATEKEVSHGRMVVALNDYPGSGANNRHTPRPQFRGCADC

Homology

[Close]

BLAST of Lsi02G000760 vs. ExPASy TrEMBL
Match: A0A5D3BKK4 (Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00920 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MAAATHFLRLLVIFLGLHNLLSSNAVPTSRSVSLLHGSHPSLHVSSNTHMVTATEKEVSH 60
          MAAA+HFLRLLVIFLGL+NLL SNAVPTSRSVSLLHGS P LHVSS+THMVT TE+E SH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 92
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lsi02G000760 vs. ExPASy TrEMBL
Match: A0A1S3B758 (uncharacterized protein LOC103486492 OS=Cucumis melo OX=3656 GN=LOC103486492 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MAAATHFLRLLVIFLGLHNLLSSNAVPTSRSVSLLHGSHPSLHVSSNTHMVTATEKEVSH 60
          MAAA+HFLRLLVIFLGL+NLL SNAVPTSRSVSLLHGS P LHVSS+THMVT TE+E SH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 92
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lsi02G000760 vs. ExPASy TrEMBL
Match: A0A5A7T3C3 (Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00820 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.6e-37
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MAAATHFLRLLVIFLGLHNLLSSNAVPTSRSVSLLHGSHPSLHVSSNTHMVTATEKEVSH 60
          MAAA+HFLRLLVIFLGL+NLL SNAVPTSRSVSLLHGS P LHVS++THMVT TE+E SH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSTDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 92
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lsi02G000760 vs. ExPASy TrEMBL
Match: A0A0A0LQ59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033240 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.2e-36
Identity = 81/91 (89.01%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MAAATHFLRLLVIFLGLHNLLSSNAVPTSRSVSLLHGSHPSLHVSSNTHMVTATEKEVSH 60
          MAAA+HFLRLLVIFLGL+NLL SNAVPTSRSVSLLHGS P  HVSSNT MVT TE+E SH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 92
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lsi02G000760 vs. ExPASy TrEMBL
Match: A0A6J1KDD0 (uncharacterized protein LOC111492835 OS=Cucurbita maxima OX=3661 GN=LOC111492835 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 3  AATHFLRLLVIFLGLHNLLSSNAVPTSRSVSLLHGSHPSLHVSSNTHMVTATEKEVSHGR 62
          A T+FL LLV+FLG+ NLL SNAVPTSRSVSLLHGS   LHVSS+THMV+AT+KE SHGR
Sbjct: 2  ATTNFLCLLVVFLGVSNLLCSNAVPTSRSVSLLHGSDQFLHVSSDTHMVSATKKEQSHGR 61

Query: 63 MVVALNDYPGSGANNRHTPRPQFRGCADC 92
          M V LNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 62 MSVELNDYPGSGANNRHTPRPQFRGCADC 90

[Close]

BLAST of Lsi02G000760 vs. NCBI nr
Match: XP_008442734.1 (PREDICTED: uncharacterized protein LOC103486492 [Cucumis melo] >TYJ98895.1 putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 3.4e-37
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MAAATHFLRLLVIFLGLHNLLSSNAVPTSRSVSLLHGSHPSLHVSSNTHMVTATEKEVSH 60
          MAAA+HFLRLLVIFLGL+NLL SNAVPTSRSVSLLHGS P LHVSS+THMVT TE+E SH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 92
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lsi02G000760 vs. NCBI nr
Match: KAA0036087.1 (putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 7.5e-37
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MAAATHFLRLLVIFLGLHNLLSSNAVPTSRSVSLLHGSHPSLHVSSNTHMVTATEKEVSH 60
          MAAA+HFLRLLVIFLGL+NLL SNAVPTSRSVSLLHGS P LHVS++THMVT TE+E SH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSTDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 92
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lsi02G000760 vs. NCBI nr
Match: XP_038895124.1 (uncharacterized protein LOC120083435 [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 1.7e-36
Identity = 83/91 (91.21%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MAAATHFLRLLVIFLGLHNLLSSNAVPTSRSVSLLHGSHPSLHVSSNTHMVTATEKEVSH 60
          MAAATHFLRLLVIFLGL +LL SNAVPTSRSVSLL GSHP L VSSNTHMVTATE+EVS 
Sbjct: 1  MAAATHFLRLLVIFLGLCSLLCSNAVPTSRSVSLLRGSHPFLLVSSNTHMVTATEEEVSR 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 92
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lsi02G000760 vs. NCBI nr
Match: XP_011649815.1 (uncharacterized protein LOC101218201 [Cucumis sativus] >KGN64005.1 hypothetical protein Csa_014107 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 81/91 (89.01%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MAAATHFLRLLVIFLGLHNLLSSNAVPTSRSVSLLHGSHPSLHVSSNTHMVTATEKEVSH 60
          MAAA+HFLRLLVIFLGL+NLL SNAVPTSRSVSLLHGS P  HVSSNT MVT TE+E SH
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFPHVSSNTLMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 92
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lsi02G000760 vs. NCBI nr
Match: KAG6607449.1 (hypothetical protein SDJN03_00791, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037107.1 hypothetical protein SDJN02_00728 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 3.2e-32
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 3  AATHFLRLLVIFLGLHNLLSSNAVPTSRSVSLLHGSHPSLHVSSNTHMVTATEKEVSHGR 62
          A+T+FL LLV+FLG+ NLL SNAVPTSRSVSLLHGS   LHVSS+THMV+AT+KE SHGR
Sbjct: 2  ASTNFLCLLVVFLGVSNLLCSNAVPTSRSVSLLHGSDQFLHVSSDTHMVSATKKEESHGR 61

Query: 63 MVVALNDYPGSGANNRHTPRPQFRGCADC 92
          M V LNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 62 MAVELNDYPGSGANNRHTPRPQFRGCADC 90

[Close]

BLAST of Lsi02G000760 vs. TAIR 10
Match: AT3G47510.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 5.6e-06
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 55 EKEVSHGRMVVALNDYPGSGANNRHTPRPQFRGC-ADC 92
          +KEV   RMV+ LNDYPGSGANNRH PR   RGC  DC
Sbjct: 51 KKEVEE-RMVMELNDYPGSGANNRHLPRQ--RGCVVDC 85

[Close]

BLAST of Lsi02G000760 vs. TAIR 10
Match: AT1G74458.1 (unknown protein; LOCATED IN: endomembrane system; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 6.8e-04
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 0


Query: 67 LNDYPGSGANNRHTPRPQFRGCADC 92
          +NDYPGSGANNRHTP      C+DC
Sbjct: 75 INDYPGSGANNRHTPH-----CSDC 94

The following BLAST results are available for this feature:

BLAST of Lsi02G000760 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G000760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BKK4	1.6e-37	90.11	Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3B758	1.6e-37	90.11	uncharacterized protein LOC103486492 OS=Cucumis melo OX=3656 GN=LOC103486492 PE=...	[more]
A0A5A7T3C3	3.6e-37	89.01	Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A0A0LQ59	5.2e-36	89.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033240 PE=4 SV=1	[more]
A0A6J1KDD0	3.5e-32	82.02	uncharacterized protein LOC111492835 OS=Cucurbita maxima OX=3661 GN=LOC111492835...	[more]

BLAST of Lsi02G000760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442734.1	3.4e-37	90.11	PREDICTED: uncharacterized protein LOC103486492 [Cucumis melo] >TYJ98895.1 putat...	[more]
KAA0036087.1	7.5e-37	89.01	putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa]	[more]
XP_038895124.1	1.7e-36	91.21	uncharacterized protein LOC120083435 [Benincasa hispida]	[more]
XP_011649815.1	1.1e-35	89.01	uncharacterized protein LOC101218201 [Cucumis sativus] >KGN64005.1 hypothetical ...	[more]
KAG6607449.1	3.2e-32	82.02	hypothetical protein SDJN03_00791, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi02G000760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47510.1	5.6e-06	68.42	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G74458.1	6.8e-04	68.00	unknown protein; LOCATED IN: endomembrane system; Has 9 Blast hits to 9 proteins...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..91
None	No IPR available	PANTHER	PTHR33474	TRANSMEMBRANE PROTEIN	coord: 2..86
None	No IPR available	PANTHER	PTHR33474:SF2	TRANSMEMBRANE PROTEIN	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G000760.1	Lsi02G000760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane