Lsi02G000650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G000650
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr02: 574595 .. 574932 (+)
RNA-Seq ExpressionLsi02G000650
SyntenyLsi02G000650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTTTTGTTATCCAAATAAGTCAGCAATGGATCAATCTTGTCATGCCTGCCATATGCTTTGATCACATAACTTTTCAGGTATATGCTTGTGAAGTTGTACAGTATTATGTTTAGTTATTATCCGATAGTTTGATTTGCTGTGTTGATTATGGATTTGCTACAATCTTGTGGATGCAGTGTTTACTAGATTTCCAACCCAGTTTCTGTGGAGTGAAAGGAAAGGAAAAGACAAATGGGATCCACCATAGCAATGAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCAGCTTATATTTCTCTCTGTACCATTACTTAATTACCTGA

mRNA sequence

ATGAATCAATGGATCAATCTTGTCATGCCTGCCATATGCTTTGATCACATAACTTTTCAGTGTTTACTAGATTTCCAACCCAGTTTCTGTGGAGTGAAAGGAAAGGAAAAGACAAATGGGATCCACCATAGCAATGAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCAGCTTATATTTCTCTCTGTACCATTACTTAATTACCTGA

Coding sequence (CDS)

ATGAATCAATGGATCAATCTTGTCATGCCTGCCATATGCTTTGATCACATAACTTTTCAGTGTTTACTAGATTTCCAACCCAGTTTCTGTGGAGTGAAAGGAAAGGAAAAGACAAATGGGATCCACCATAGCAATGAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCAGCTTATATTTCTCTCTGTACCATTACTTAATTACCTGA

Protein sequence

MNQWINLVMPAICFDHITFQCLLDFQPSFCGVKGKEKTNGIHHSNEMVAEFNAANPTCSSLYFSLYHYLIT
Homology
[Close]
BLAST of Lsi02G000650 vs. ExPASy TrEMBL
Match: A0A0A0LTA5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033070 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.1e-28
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 9  MPAICFDHITFQCLLDFQPSFCGVKGKEKTNGIHHSNEMVAEFNAANPTCSSLYFSLYHY 68
          MPAICFDHI FQCLLDFQPSFCGVKGKEKTNGIHHS++MVAEFNAANPTCSSLYFSLYH+
Sbjct: 1  MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHH 60

Query: 69 LIT 72
          LIT
Sbjct: 61 LIT 63

[Close]
BLAST of Lsi02G000650 vs. NCBI nr
Match: KGN63987.1 (hypothetical protein Csa_014108 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 9  MPAICFDHITFQCLLDFQPSFCGVKGKEKTNGIHHSNEMVAEFNAANPTCSSLYFSLYHY 68
          MPAICFDHI FQCLLDFQPSFCGVKGKEKTNGIHHS++MVAEFNAANPTCSSLYFSLYH+
Sbjct: 1  MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHH 60

Query: 69 LIT 72
          LIT
Sbjct: 61 LIT 63

[Close]
BLAST of Lsi02G000650 vs. NCBI nr
Match: KAG6584453.1 (hypothetical protein SDJN03_20385, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 26 QPSFCGVKGKEKTNGIHHSNEMVAEFNAANPTCSSLYFSL 66
          QPSFCGV+ KEKTNGIHHS+EMVAEFNAANPTCS+LYF L
Sbjct: 7  QPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTLYFPL 46

The following BLAST results are available for this feature:
BLAST of Lsi02G000650 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi02G000650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTA59.1e-2893.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033070 PE=4 SV=1[more]
BLAST of Lsi02G000650 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63987.11.9e-2793.65hypothetical protein Csa_014108 [Cucumis sativus][more]
KAG6584453.11.9e-1187.50hypothetical protein SDJN03_20385, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lsi02G000650 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G000650.1Lsi02G000650.1mRNA