Lsi02G000470 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G000470
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RRM domain-containing protein
Location	chr02: 444584 .. 447809 (+)
RNA-Seq Expression	Lsi02G000470
Synteny	Lsi02G000470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCTTTTGGGTGAAACGCCGGAGAAGACGAAAATGACCGTCGGATTGCACTTCACAGTCACAGCAGCTCCAAAACCGTTCTTTCAGTTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGCATTCAAAGCATTCAATCCCAATTGGCTTACGGTTCTACGCCACGCCCCTTCTTCTCTGTGAGGAAGACCCACTCAATTTCAGACTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGATACACGCCTTCAACTAGGCTCTACGTCAGTGGTTGATTTTCTCTCTTAATTGTGTATTTAGGCGTAATTTTGCTAACTATGTCTGTGGAGACAATTTGGATTTATTGAATGATTCCAACTTCACGCGTGCAGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGGAATGCTTTCAAAAGCTTTGGCCAACTTGAAGAAGGTCGTCGACTAGTTCTCGTGTATTCTGAACGTCTAATTTTGTCACAATAGTTGATGCTTGGCGCTAACTGTTATCACTTTTTATAAATTTCAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTACTGAAGAAGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGGTAATTTAAACGCTCTACCTTTGCAATCGATGCTCTGTCTATTATTTTCCAAATGAGTGTAGTTTTCATAATGCATATTGTTTTCTTATGTGTTATATATTATATTATCCTCTTAATCGCCAAAATCCACTTAACATGCTATTTTCTTATTCACTGTGATTTTGTAATGCATATGACTCGCTGTCTAGAAGTATATCTCATTTAGTCATCATCTCTAGCTGAAGACAGTAGATCCATCTATTAGAACCCTAAATAACTAATCCAGAAATTACGAAATTTAATTCCATTAACTGCCATCTTGAGCAAGCCTTTCAGTATTTATGATATAAAATCATAGAAATCAGAATCCTCCAGTTTAGGCATTACACAAAGCAGCAAGAAACCTTGAAATCCTCTATAAATTAGTTAGAGAATAGATATCTTATCTAGATAGGAGAAGTTGGAATTAATAGATTTAAGGTAGCATGAAGAGGATATAAGGTAGCGTTCATCCAGTTATTCTTAATCTTGCTGTCTTTCCCAGCTGTGGAACATTAAAACTGTTATACCGTCAAACGAAAAAATGAACTGCGTCAGTGGATAGTTAATAGTTGAATGCTGATCTAAGCATTTGCTATTATGATAACTTTGTTTTATTACATTGGTGAACGTGTATATATCAGCAGGTAGATTAACATTGTTAGGAGGAACAAAGGCAATTAATTGAACCTGCCCTCTACATTCAAAACCTTGGATGGAACTCACCAGAGATTTGTACATGATCTTATAATATTAAAGAGGCATCGTCTCTTCCCCTGTCTCCTGAGCCAAGTAAAACTTACCAGCAGGCAGTAACTCCACCTGAAAGATCTCCTTCACGGCTTGGACAAGATTTGGATCTTGTCCTTGTCTTCTATGTGGTATGCAAGAAACTAAGCCAATCCCTTTTGGAGCTACCTCTAAATCCAAATCCAATGACAATGAGAATCCCATTTCATTTTGAATAGGTAATTCAATCTTCACCGAAGCTAACATCATCTCTATCACGAGCCTAATTCACTCCCTTTTCCTTTCCTTGTCAAAGCTCTCCTATTTACAATCACTTACCTAAGAAACTAACTAGTTCCAACTAACTCTGGCTAAGGGCAAAAGTGTTTAAAGTGAAAGCACGAGTGTTTTTTAAATCTTCAGAATGATTATTATTATTTAACTAAATACTATGAAAATTTTGAAAAATATTTTAAAGTAATTTTTCATCCTTCTAAAAGTGATTCCAACTCACTACCACTGGTGGTCATTCTCGTCTTTGCCCTTCATATTATAGTAAACCATGTGGAAGGCTTAGGAGGCCTATCAAATACTGCTTAAACCAAAATATCAAACGTTTCTTGAATATTCGGCATGTTCTACATAATTAATTGTAACAAATTTCAGTATAATTCCATATGGACTTGGAAAAGAATTGATTAGAGAAATATCATGGTTAAACCCTAATTGCTGGCTTGAATTGTCATAAAATGATCACTGTTTAATGATCTTGTTATATGAAAGGATTTATTTTTAATTAAACTCAAAACAACACTAGATTCAATAAATTCACGTTTTTAGCAAAAATATTTGTGTTTCCAAGTTCCATAACTGGCCATATTGCTGTTAAATATGAGGCACTTTTTGGCCTCGAGGCTTCCTCCAATTTGTAGTGACAACTATGTTTGACGAAGTTAACAGTCAAAGAACTTATTCCCAGGTTTATTTGATGGATATACTCTCCCCACCTCTTCTCATTGGAAAGCATGAATTGATATGATATTCTCTTCTTGGATTCCATGGATAAAATTCCGATGCCACCTCAAGAGAAAAAGGCTACTTTTAAAATCAAGTTTATAGCTATGAGGGTCTGATCTATGCTAATTGATTATGGGGGGCTTTTTATATATATTTTTAATAAAATAAAAAGAGAATCTTTGATGATCTTGTTGTCTTAAATTTATTGGTGCATGTTATTTTCAATCATGGTAGCATCATGGGCTAATAGGGGAAACTTTGGTTTAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAATCCAGATCGGAGCTTCGCCTTGGCCTTAAAGAAAACTCTGGCTAATTGCTATTAAATAGGGAGTCATTGTTTCCCTCAAAAGTCAGATTCATTTATAAAAGAGCCGTAACGTATTTTAGGAATATATATAATATACACATTGATGGGCTCTCTGGTTGTTATTGGTCTGAGAAAGCTTGATCTTGATTGTATGATTATGATATAGTTAAAGCGTATTTCAGGAGCAGCGTTTTCTCTTGAAATTGAATGATATTAATATTGGGGATTGGTCAAGTGGATCACCTAACCAAATATGAACTTCTGAGACATGGGCTATGGTCAAAGATCACAGGTTGGAAGAAGAATATGAATGCTTAAATCCTGAGATGCGCAGATTTTTAGAAATAATAAGAGGATTTTAAGGGGTGTCCATACCAGACATGTACCCGTGAGAGAGAGAGTGACATCATTTGAAACAAACAAGGAGAGCCCTCCCG

mRNA sequence

CGGCTTTTGGGTGAAACGCCGGAGAAGACGAAAATGACCGTCGGATTGCACTTCACAGTCACAGCAGCTCCAAAACCGTTCTTTCAGTTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGCATTCAAAGCATTCAATCCCAATTGGCTTACGGTTCTACGCCACGCCCCTTCTTCTCTGTGAGGAAGACCCACTCAATTTCAGACTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGATACACGCCTTCAACTAGGCTCTACTGGTTGATTTTCTCTCTTAATTGTGTATTTAGGCGTAATTTTGCTAACTATGTCTGTGGAGACAATTTGGATTTATTGAATGATTCCAACTTCACGCGTGCAGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGGAATGCTTTCAAAAGCTTTGGCCAACTTGAAGAAGGTCGTCGACTAGTTCTCGTGTATTCTGAACTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTACTGAAGAAGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAATCCAGATCGGAGCTTCGCCTTGGCCTTAAAGAAAACTCTGGCTAATTGCTATTAAATAGGGAGTCATTGTTTCCCTCAAAAGTCAGATTCATTTATAAAAGAGCCGTAACGTATTTTAGGAATATATATAATATACACATTGATGGGCTCTCTGGTTGTTATTGGTCTGAGAAAGCTTGATCTTGATTGTATGATTATGATATAGTTAAAGCGTATTTCAGGAGCAGCGTTTTCTCTTGAAATTGAATGATATTAATATTGGGGATTGGTCAAGTGGATCACCTAACCAAATATGAACTTCTGAGACATGGGCTATGGTCAAAGATCACAGGTTGGAAGAAGAATATGAATGCTTAAATCCTGAGATGCGCAGATTTTTAGAAATAATAAGAGGATTTTAAGGGGTGTCCATACCAGACATGTACCCGTGAGAGAGAGAGTGACATCATTTGAAACAAACAAGGAGAGCCCTCCCG

Coding sequence (CDS)

CGGCTTTTGGGTGAAACGCCGGAGAAGACGAAAATGACCGTCGGATTGCACTTCACAGTCACAGCAGCTCCAAAACCGTTCTTTCAGTTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGCATTCAAAGCATTCAATCCCAATTGGCTTACGGTTCTACGCCACGCCCCTTCTTCTCTGTGAGGAAGACCCACTCAATTTCAGACTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGATACACGCCTTCAACTAGGCTCTACTGGTTGATTTTCTCTCTTAATTGTGTATTTAGGCGTAATTTTGCTAACTATGTCTGTGGAGACAATTTGGATTTATTGAATGATTCCAACTTCACGCGTGCAGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGGAATGCTTTCAAAAGCTTTGGCCAACTTGAAGAAGGTCGTCGACTAGTTCTCGTGTATTCTGAACTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTACTGAAGAAGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAATCCAGATCGGAGCTTCGCCTTGGCCTTAAAGAAAACTCTGGCTAA

Protein sequence

RLLGETPEKTKMTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHSISDSPLFSVACVSSSPSPSPRRYTPSTRLYWLIFSLNCVFRRNFANYVCGDNLDLLNDSNFTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRLGLKENSG

Homology

[Close]

BLAST of Lsi02G000470 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.5e-25
Identity = 57/88 (64.77%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 135 AGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATEEES 194
           +GLSFRTTE++LR+ F+ FG L            +N+VMDKVANRP+GFAFLRY TEEE+
Sbjct: 82  SGLSFRTTEDTLRDTFEQFGNL----------IHMNMVMDKVANRPKGFAFLRYETEEEA 141

Query: 195 QKAIEGMHGKFLDGRVIFVEVAKSRSEL 223
            KAI+GMHGKFLDGRVIFVE AK+RS++
Sbjct: 142 MKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of Lsi02G000470 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.1e-14
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 130 SNFTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYA 189
           +N   +GLS RTT E LR AF  FG++ + +          +V D+V+   +GF F+RYA
Sbjct: 56  TNLFVSGLSKRTTSEGLRTAFAQFGEVADAK----------VVTDRVSGYSKGFGFVRYA 115

Query: 190 TEEESQKAIEGMHGKFLDGRVIFVEVAKSRSE 222
           T E+S K I GM GKFLDG VIF E A+ R +
Sbjct: 116 TLEDSAKGIAGMDGKFLDGWVIFAEYARPREQ 137

[Close]

BLAST of Lsi02G000470 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-12
Identity = 37/89 (41.57%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 136 GLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATEEESQ 195
           GLSF T+E++LR AF+ FG+L           E+ ++MD+++ R +G+AF+ Y TEE   
Sbjct: 305 GLSFYTSEKTLRAAFEPFGEL----------VEVKIIMDRISKRSKGYAFVEYTTEEAGG 364

Query: 196 KAIEGMHGKFLDGRVIFVEVAKSRSELRL 225
            A++ M+G+ ++G +I V+VAK+RS  RL
Sbjct: 365 AALKAMNGQIINGWMIVVDVAKTRSRDRL 383

[Close]

BLAST of Lsi02G000470 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-12
Identity = 36/84 (42.86%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 136 GLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATEEESQ 195
           GLSF T+E++LR AF+ FG+L           E+ ++MDK++ R +G+AFL Y TEE + 
Sbjct: 288 GLSFYTSEKTLRAAFEGFGEL----------VEVKIIMDKISKRSKGYAFLEYTTEEAAG 347

Query: 196 KAIEGMHGKFLDGRVIFVEVAKSR 220
            A++ M+GK ++G +I V+VAK++
Sbjct: 348 TALKEMNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Lsi02G000470 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-12
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 136 GLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATEEESQ 195
           GLSF T+E++LR AF+ FG+L           E+ ++MDK++ R +G+AF+ Y TEE   
Sbjct: 301 GLSFYTSEKTLRAAFEPFGEL----------VEVKIIMDKISKRSKGYAFIEYTTEEAGG 360

Query: 196 KAIEGMHGKFLDGRVIFVEVAKSRSELR 224
            A++ M+G+ ++G +I V+VAK RS  R
Sbjct: 361 AALKAMNGQIINGWMIVVDVAKHRSRDR 378

[Close]

BLAST of Lsi02G000470 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 2.2e-70
Identity = 153/219 (69.86%), Postives = 161/219 (73.52%), Query Frame = 0


Query: 12  MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 71
           MT GL FTVTAAPKPFF  QTTHHNNIRSTETHMR QS QS+LAY STP PFFS RKT S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 72  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYWLIFSLNCVFRRNFANYVCGDNLDLLNDSN 131
           IS+SPLFSVACVSS  SPSPRRY+PSTRLY                              
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLY------------------------------ 120

Query: 132 FTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATE 191
              +GLSFRTTEESLRNAFKSFGQL           E+NLVMD+VANRPRGFAFLRYA+E
Sbjct: 121 --VSGLSFRTTEESLRNAFKSFGQL----------VEVNLVMDRVANRPRGFAFLRYASE 175

Query: 192 EESQKAIEGMHGKFLDGRVIFVEVAKSRSELRLGLKENS 231
           EESQKAIEGMHGKFLDGRVIFVE+AK RSELR GLKENS
Sbjct: 181 EESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENS 175

[Close]

BLAST of Lsi02G000470 vs. ExPASy TrEMBL
Match: A0A6J1GCJ4 (organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452900 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.8e-69
Identity = 155/230 (67.39%), Postives = 166/230 (72.17%), Query Frame = 0


Query: 1   RLLGETPEKTKMTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTP 60
           RL  E PEKTKMT GL F  +AAP PFFQ Q+  +N+IRST T MRIQSIQS+LAY +TP
Sbjct: 18  RLSAEAPEKTKMTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTP 77

Query: 61  RPFFSVRKTHSISDSPLFSVACVSSSPSPSPRRYTPSTRLYWLIFSLNCVFRRNFANYVC 120
            PFFSV+KT SISDSPLFSV CVSSSPSPSPRRY+PSTRLY                   
Sbjct: 78  PPFFSVKKTRSISDSPLFSVTCVSSSPSPSPRRYSPSTRLY------------------- 137

Query: 121 GDNLDLLNDSNFTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRP 180
                         +GLSFRTTEESLRNAF SFGQL           E+NLVMDKVANRP
Sbjct: 138 -------------VSGLSFRTTEESLRNAFTSFGQL----------VEVNLVMDKVANRP 197

Query: 181 RGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRLGLKENS 231
           RGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKS+ ELR GLKENS
Sbjct: 198 RGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENS 203

[Close]

BLAST of Lsi02G000470 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 9.1e-69
Identity = 153/221 (69.23%), Postives = 163/221 (73.76%), Query Frame = 0


Query: 12  MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 71
           MT GL FTVTAAPKPFFQ QTTHH++I STET MRI+SIQS+LAY STP PFFS RKT S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 72  ISDSPLFSVACVSSSP--SPSPRRYTPSTRLYWLIFSLNCVFRRNFANYVCGDNLDLLND 131
           ISDS LFSVACVSSSP  S SPRRYTPSTRLY                            
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLY---------------------------- 120

Query: 132 SNFTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYA 191
                +GLSFRTTEESLRNAFKSFGQL           E+NLVMD++ANRPRGFAFLRYA
Sbjct: 121 ----ISGLSFRTTEESLRNAFKSFGQL----------VEVNLVMDRLANRPRGFAFLRYA 179

Query: 192 TEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRLGLKENS 231
           +EEESQKAIEGMHGKFLDGRVIFVEVAKSRSELR GL+ENS
Sbjct: 181 SEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENS 179

[Close]

BLAST of Lsi02G000470 vs. ExPASy TrEMBL
Match: A0A6J1KDG6 (organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492861 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 9.4e-66
Identity = 148/219 (67.58%), Postives = 158/219 (72.15%), Query Frame = 0


Query: 12  MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 71
           MT GL F  +A P PFFQ Q+T +NNIRST T MRIQSIQS+LAY +TP PFFSV+KT S
Sbjct: 1   MTAGLLF--SAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRS 60

Query: 72  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYWLIFSLNCVFRRNFANYVCGDNLDLLNDSN 131
           ISDSPLFSV CVSSSPSPSPRRY+PSTRLY                              
Sbjct: 61  ISDSPLFSVTCVSSSPSPSPRRYSPSTRLY------------------------------ 120

Query: 132 FTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATE 191
              +GLSFRTTEESLRNAF SFGQL           E+NLVMDKVANRPRGFAFLRYATE
Sbjct: 121 --VSGLSFRTTEESLRNAFTSFGQL----------VEVNLVMDKVANRPRGFAFLRYATE 175

Query: 192 EESQKAIEGMHGKFLDGRVIFVEVAKSRSELRLGLKENS 231
           EESQKAIEGMHGKFLDGRVIFVEVAKS+ ELR GLKENS
Sbjct: 181 EESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENS 175

[Close]

BLAST of Lsi02G000470 vs. ExPASy TrEMBL
Match: A0A5A7SXY0 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00550 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 3.2e-58
Identity = 132/195 (67.69%), Postives = 139/195 (71.28%), Query Frame = 0


Query: 12  MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 71
           MT GL FTVTAAPKPFFQ QTTHHNNIRSTETHMR QS QS+LAY STP PFFS RKT S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 72  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYWLIFSLNCVFRRNFANYVCGDNLDLLNDSN 131
           IS+SPLFSVACVSS  SPSPRRY+PSTRLY                              
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLY------------------------------ 120

Query: 132 FTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATE 191
              +GLSFRTTEESLRNAFKSFGQL           E+NLVMD+VANRPRGFAFLRYA+E
Sbjct: 121 --VSGLSFRTTEESLRNAFKSFGQL----------VEVNLVMDRVANRPRGFAFLRYASE 151

Query: 192 EESQKAIEGMHGKFL 207
           EESQKAIEGMHGK L
Sbjct: 181 EESQKAIEGMHGKAL 151

[Close]

BLAST of Lsi02G000470 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 293.5 bits (750), Expect = 1.6e-75
Identity = 161/219 (73.52%), Postives = 165/219 (75.34%), Query Frame = 0


Query: 12  MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 71
           MT GL FTV AAPKPFFQFQ THHNNIRSTETH RI SI+SQLAY STP PFFSVRKTHS
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 72  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYWLIFSLNCVFRRNFANYVCGDNLDLLNDSN 131
           ISDSPLFS+AC SSSPSPSPRRYTPSTRLY                              
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLY------------------------------ 120

Query: 132 FTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATE 191
              +GLSFRTTEESLRNAFKSFGQL           E+NLVMDKVANRPRGFAFLRYATE
Sbjct: 121 --VSGLSFRTTEESLRNAFKSFGQL----------VEVNLVMDKVANRPRGFAFLRYATE 177

Query: 192 EESQKAIEGMHGKFLDGRVIFVEVAKSRSELRLGLKENS 231
           EESQKAIEGMHGKFLDGRVIFVEVAKSRSELR GLKENS
Sbjct: 181 EESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENS 177

[Close]

BLAST of Lsi02G000470 vs. NCBI nr
Match: XP_008439477.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 275.4 bits (703), Expect = 4.5e-70
Identity = 153/219 (69.86%), Postives = 161/219 (73.52%), Query Frame = 0


Query: 12  MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 71
           MT GL FTVTAAPKPFF  QTTHHNNIRSTETHMR QS QS+LAY STP PFFS RKT S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 72  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYWLIFSLNCVFRRNFANYVCGDNLDLLNDSN 131
           IS+SPLFSVACVSS  SPSPRRY+PSTRLY                              
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLY------------------------------ 120

Query: 132 FTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATE 191
              +GLSFRTTEESLRNAFKSFGQL           E+NLVMD+VANRPRGFAFLRYA+E
Sbjct: 121 --VSGLSFRTTEESLRNAFKSFGQL----------VEVNLVMDRVANRPRGFAFLRYASE 175

Query: 192 EESQKAIEGMHGKFLDGRVIFVEVAKSRSELRLGLKENS 231
           EESQKAIEGMHGKFLDGRVIFVE+AK RSELR GLKENS
Sbjct: 181 EESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENS 175

[Close]

BLAST of Lsi02G000470 vs. NCBI nr
Match: XP_022949592.1 (organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 272.3 bits (695), Expect = 3.8e-69
Identity = 155/230 (67.39%), Postives = 166/230 (72.17%), Query Frame = 0


Query: 1   RLLGETPEKTKMTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTP 60
           RL  E PEKTKMT GL F  +AAP PFFQ Q+  +N+IRST T MRIQSIQS+LAY +TP
Sbjct: 18  RLSAEAPEKTKMTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTP 77

Query: 61  RPFFSVRKTHSISDSPLFSVACVSSSPSPSPRRYTPSTRLYWLIFSLNCVFRRNFANYVC 120
            PFFSV+KT SISDSPLFSV CVSSSPSPSPRRY+PSTRLY                   
Sbjct: 78  PPFFSVKKTRSISDSPLFSVTCVSSSPSPSPRRYSPSTRLY------------------- 137

Query: 121 GDNLDLLNDSNFTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRP 180
                         +GLSFRTTEESLRNAF SFGQL           E+NLVMDKVANRP
Sbjct: 138 -------------VSGLSFRTTEESLRNAFTSFGQL----------VEVNLVMDKVANRP 197

Query: 181 RGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRLGLKENS 231
           RGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKS+ ELR GLKENS
Sbjct: 198 RGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENS 203

[Close]

BLAST of Lsi02G000470 vs. NCBI nr
Match: XP_011649648.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 1.9e-68
Identity = 153/221 (69.23%), Postives = 163/221 (73.76%), Query Frame = 0


Query: 12  MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 71
           MT GL FTVTAAPKPFFQ QTTHH++I STET MRI+SIQS+LAY STP PFFS RKT S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 72  ISDSPLFSVACVSSSP--SPSPRRYTPSTRLYWLIFSLNCVFRRNFANYVCGDNLDLLND 131
           ISDS LFSVACVSSSP  S SPRRYTPSTRLY                            
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLY---------------------------- 120

Query: 132 SNFTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYA 191
                +GLSFRTTEESLRNAFKSFGQL           E+NLVMD++ANRPRGFAFLRYA
Sbjct: 121 ----ISGLSFRTTEESLRNAFKSFGQL----------VEVNLVMDRLANRPRGFAFLRYA 179

Query: 192 TEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRLGLKENS 231
           +EEESQKAIEGMHGKFLDGRVIFVEVAKSRSELR GL+ENS
Sbjct: 181 SEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENS 179

[Close]

BLAST of Lsi02G000470 vs. NCBI nr
Match: KAG6607420.1 (Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037088.1 Organelle RRM domain-containing protein 6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.2 bits (687), Expect = 3.2e-68
Identity = 154/230 (66.96%), Postives = 165/230 (71.74%), Query Frame = 0


Query: 1   RLLGETPEKTKMTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTP 60
           RL  E PEKTKMT GL F  +AAP PFFQ Q+  +N+IRST T MRIQSIQS+LAY +TP
Sbjct: 18  RLSAEAPEKTKMTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTP 77

Query: 61  RPFFSVRKTHSISDSPLFSVACVSSSPSPSPRRYTPSTRLYWLIFSLNCVFRRNFANYVC 120
            PFFSV+KT SISDSPL SV CVSSSPSPSPRRY+PSTRLY                   
Sbjct: 78  LPFFSVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLY------------------- 137

Query: 121 GDNLDLLNDSNFTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRP 180
                         +GLSFRTTEESLRNAF SFGQL           E+NLVMDKVANRP
Sbjct: 138 -------------VSGLSFRTTEESLRNAFTSFGQL----------VEVNLVMDKVANRP 197

Query: 181 RGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRLGLKENS 231
           RGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKS+ ELR GLKENS
Sbjct: 198 RGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENS 203

[Close]

BLAST of Lsi02G000470 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 116.7 bits (291), Expect = 2.5e-26
Identity = 57/88 (64.77%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 135 AGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATEEES 194
           +GLSFRTTE++LR+ F+ FG L            +N+VMDKVANRP+GFAFLRY TEEE+
Sbjct: 82  SGLSFRTTEDTLRDTFEQFGNL----------IHMNMVMDKVANRPKGFAFLRYETEEEA 141

Query: 195 QKAIEGMHGKFLDGRVIFVEVAKSRSEL 223
            KAI+GMHGKFLDGRVIFVE AK+RS++
Sbjct: 142 MKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of Lsi02G000470 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-16
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 137 LSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATEEESQK 196
           LS  TT++SLR  F  FGQ++E R          L+ D    RP+GF F+ + +E++++K
Sbjct: 14  LSAYTTDQSLRQLFSPFGQIKEAR----------LIRDSETQRPKGFGFITFDSEDDARK 73

Query: 197 AIEGMHGKFLDGRVIFVEVAKSRSELRLGLKEN 230
           A++ + GK +DGR+IFVEVAK+  E+R G+  N
Sbjct: 74  ALKSLDGKIVDGRLIFVEVAKNAEEVRAGINSN 96

[Close]

BLAST of Lsi02G000470 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-15
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 130 SNFTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYA 189
           +N   +GLS RTT E LR AF  FG++ + +          +V D+V+   +GF F+RYA
Sbjct: 56  TNLFVSGLSKRTTSEGLRTAFAQFGEVADAK----------VVTDRVSGYSKGFGFVRYA 115

Query: 190 TEEESQKAIEGMHGKFLDGRVIFVEVAKSRSE 222
           T E+S K I GM GKFLDG VIF E A+ R +
Sbjct: 116 TLEDSAKGIAGMDGKFLDGWVIFAEYARPREQ 137

[Close]

BLAST of Lsi02G000470 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-13
Identity = 36/84 (42.86%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 136 GLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVANRPRGFAFLRYATEEESQ 195
           GLSF T+E++LR AF+ FG+L           E+ ++MDK++ R +G+AFL Y TEE + 
Sbjct: 288 GLSFYTSEKTLRAAFEGFGEL----------VEVKIIMDKISKRSKGYAFLEYTTEEAAG 347

Query: 196 KAIEGMHGKFLDGRVIFVEVAKSR 220
            A++ M+GK ++G +I V+VAK++
Sbjct: 348 TALKEMNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Lsi02G000470 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-12
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 119 VCGDNLDLLNDSNFTRAGLSFRTTEESLRNAFKSFGQLEEGRRLVLVYSELNLVMDKVAN 178
           +C      L       +GLS  TT E L++AF SFGQL + R          ++ D+ + 
Sbjct: 23  LCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDAR----------VITDRDSG 82

Query: 179 RPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELR 224
           R +GF F+ YAT E+++KA   M+ KFLDG VIFV+ A+ R   R
Sbjct: 83  RSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRR 117

The following BLAST results are available for this feature:

BLAST of Lsi02G000470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	3.5e-25	64.77	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	8.1e-14	45.65	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
C0HFE5	1.2e-12	41.57	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
Q8L440	2.0e-12	42.86	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
Q6YWP9	2.0e-12	42.05	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]

BLAST of Lsi02G000470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AYF6	2.2e-70	69.86	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A6J1GCJ4	1.8e-69	67.39	organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata O...	[more]
A0A0A0LQB8	9.1e-69	69.23	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]
A0A6J1KDG6	9.4e-66	67.58	organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxim...	[more]
A0A5A7SXY0	3.2e-58	67.69	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]

BLAST of Lsi02G000470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895072.1	1.6e-75	73.52	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h...	[more]
XP_008439477.1	4.5e-70	69.86	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu...	[more]
XP_022949592.1	3.8e-69	67.39	organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata]	[more]
XP_011649648.1	1.9e-68	69.23	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sat...	[more]
KAG6607420.1	3.2e-68	66.96	Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita arg...	[more]

BLAST of Lsi02G000470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	2.5e-26	64.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	4.0e-16	41.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	5.7e-15	45.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	1.4e-13	42.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	1.6e-12	39.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 135..214 e-value: 1.2E-9 score: 48.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 136..211 e-value: 7.1E-11 score: 41.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 130..218 score: 14.50465
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 132..223 e-value: 2.8E-20 score: 74.8
None	No IPR available	PANTHER	PTHR48029	NUCLEOLAR PROTEIN 8	coord: 25..229
None	No IPR available	PANTHER	PTHR48029:SF4	ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC	coord: 25..229
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 136..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G000470.1	Lsi02G000470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding