Lsi02G000440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G000440
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPectate lyase family protein
Locationchr02: 428058 .. 430143 (-)
RNA-Seq ExpressionLsi02G000440
SyntenyLsi02G000440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTGCAATCAATATATATACTAAAAACAAAAAGTAGTGATTAATTCTCTTTATTTCTAGTGGATCAAAATATTTGATGATGGGATCCATTTATTTATATAAATTAATTATAAGGTTGTGACAAGACAAATTATTATTAAAATGAATTGGATGTGATAATATCAACATTTTGAGTTTGATGAGCAGCGTAATGCCCCGGAGGAGCTTGTTAATGATCTGAGCCACTTGGCATCTGCAACTGGAAACCGTTGTTGGGCGTTGTAATTTGGCTTTACACCTCCTCTTCCCACACCAATTTGTGCAAATGAAGCTCCGTTTTCAAATACGTCTCTTACTGAATGAAACTTCCATTTAGTCTCCTCTACCTTCCCTGTGCTCCATATAATCTGCATTTGCATTAATTAAAAAAAAAAAAAAAAAAACTCAATTTTCAAATCAATATTATTTTATATATATATATATATATATATATATATCCAAATTCAATTTAATTTTAGTATTATTGTTACCTGTTTTGACTTTGATGCGATGAAAAGGTTGGCTTCGCTCTTGACGCTCGGATTCATGCTCCCTCCAATTGCGTATTGCGTCCAACCTTGGTACAAATTGTTCGCCACGTGTGCATACCCATATCGAATCCTACAATATGAGTATATTAATACCAAAAATACTTTATATTAAATGTATTCCGAGCACCACTTATTTTTTTCATCTCATCAGCAAATTTGAGAGGATGAATAAAGATGGATGCATATTAAGATACACTCAAATATTATCCTATTAATATTGTGTTTGATAATTATTTAGCAATGTTAATTATATTTCATTTTCTCAAAAAAAAATGTTAATTATTTCATAATATATATTGGGCTAAATTATATAAAAAAATACCTTTGAACTTTACACTTTGTATAAAAAATATCCTTTAACTTTTAAAAGTTTCAAAATCAACGTTAAACTTTTATAAAGAATTCAAAAGTACTTTTGCGGACAGTTTTGAAAGAAAATCTTTAATGTTTTGTTACAAAAATACACATAAACTTTTAAAAGTGTCAAAAATATATTTAAACTTATAAAATATTTTAAAAAATACCTTTACTACTGGTATATATGAACAAGAATTGTTATTGTCCTCTTCTATAATTTTCTACTTTTTTTCTCTCGGATGTATATATGACAGTAAAGATATTTTTAAATATTTTTTTTAAAAGTTTAAAGGTATTGTTTACATAAAACATTAACCGTTTTCATCCATATAGATAATTTTGATTTTTTTTTTTTTTAATTTGAGGATATTTTAAAACTTAAAAGGTATTTTTAACAAAAACAAAAAATACAGAATTTAAGAATATTTGATACCTTGGCATTCTCTGGTTGCAATTGGGTCCAAAATGGTTATAGACGACAGTGACTCTCATGTTCCGATCTCGGACATAGCCGTCATCGTGACCAAGAAGAATAACCTTGTCTTGGTCTCGGAACCAATTGTTGGAAATGGTGATGTCAGTGGACCCACGGGTGACGTCAAGCAACCCATCCTCGCAGCGGTACAGCGTGTTGTGGTCAACCCACACTTTGGAGGCCGTTACTAAACGAATGGCATCACCATCCACGTGTCCAAGTGAAATGATCTTCGAATTGGGGCCCATGACTTGACCCGCCGCCTGAGCCCTGCAGTGGTGGATAATAAGGCCGTGGATTATGATGTTGGTGGCCTTGAAAACCATCAGACACGCATTCCCGGTGATGTGGACGGTAGCGCCTCGGCCGTCGATGGCGGTGAAGCTGCTAATGAGAAGCGGCTTCTTAAGCACAATATTCATGTCTTTTCGGAATGTGATCCAGACTTTGGGTTTGATCATTGTTGCGCCGTATCTGAGCGTACCTGGGCGTGGGTTTATAGGGTCGTCGCTAGGGTCCGTGACTTGGTAGCGTATGAGATTTCTTCCCATGTTGTTGGTCATTTTTCCAGCGAACCCAACTGAACAAACGGCGAGTTGTTGCCTGTTTCTTCTCCAGTATGGGTTTGATCTCCAGCATCTGTCAATGGCGTTCATCTTCAAGCCATGGGCTTCTGAATAG

mRNA sequence

ATGAAACGTAATGCCCCGGAGGAGCTTGTTAATGATCTGAGCCACTTGGCATCTGCAACTGGAAACCGTTGTTGGGCGTTTATTATTGTTACCTGTTTTGACTTTGATGCGATGAAAAGGTTGGCTTCGCTCTTGACGCTCGGATTCATGCTCCCTCCAATTGCGTATTGCGTCCAACCTTGGTACAAATTGTTCGCCACTGACTCTCATGTTCCGATCTCGGACATAGCCGTCATCGTGACCAAGAAGAATAACCTTGTCTTGGTCTCGGAACCAATTGTTGGAAATGGTGATGTCAGTGGACCCACGGGTGACGTCAAGCAACCCATCCTCGCAGCGGTACAGCGTGTTGTGGTCAACCCACACTTTGGAGGCCTGGTGGATAATAAGGCCGTGGATTATGATGTTGGTGGCCTTGAAAACCATCAGACACGCATTCCCGGTGATGTGGACGGTAGCGCCTCGGCCGTCGATGGCGGTGAAGCTGCTAATGAGAAGCGGCTTCTTAAGCACAATATTCATGTCTTTTCGGAATGTGATCCAGACTTTGGGTTTGATCATTGTTGCGCCGTATCTGAGCGTACCTGGGCGTGGGTTTATAGGGTCGTCGCTAGGGTCCGTGACTTGGTAGCGTATGAGATTTCTTCCCATGTTGTTGCGAACCCAACTGAACAAACGGCGAGTTGTTGCCTGTTTCTTCTCCAGTATGGGTTTGATCTCCAGCATCTGTCAATGGCGTTCATCTTCAAGCCATGGGCTTCTGAATAG

Coding sequence (CDS)

ATGAAACGTAATGCCCCGGAGGAGCTTGTTAATGATCTGAGCCACTTGGCATCTGCAACTGGAAACCGTTGTTGGGCGTTTATTATTGTTACCTGTTTTGACTTTGATGCGATGAAAAGGTTGGCTTCGCTCTTGACGCTCGGATTCATGCTCCCTCCAATTGCGTATTGCGTCCAACCTTGGTACAAATTGTTCGCCACTGACTCTCATGTTCCGATCTCGGACATAGCCGTCATCGTGACCAAGAAGAATAACCTTGTCTTGGTCTCGGAACCAATTGTTGGAAATGGTGATGTCAGTGGACCCACGGGTGACGTCAAGCAACCCATCCTCGCAGCGGTACAGCGTGTTGTGGTCAACCCACACTTTGGAGGCCTGGTGGATAATAAGGCCGTGGATTATGATGTTGGTGGCCTTGAAAACCATCAGACACGCATTCCCGGTGATGTGGACGGTAGCGCCTCGGCCGTCGATGGCGGTGAAGCTGCTAATGAGAAGCGGCTTCTTAAGCACAATATTCATGTCTTTTCGGAATGTGATCCAGACTTTGGGTTTGATCATTGTTGCGCCGTATCTGAGCGTACCTGGGCGTGGGTTTATAGGGTCGTCGCTAGGGTCCGTGACTTGGTAGCGTATGAGATTTCTTCCCATGTTGTTGCGAACCCAACTGAACAAACGGCGAGTTGTTGCCTGTTTCTTCTCCAGTATGGGTTTGATCTCCAGCATCTGTCAATGGCGTTCATCTTCAAGCCATGGGCTTCTGAATAG

Protein sequence

MKRNAPEELVNDLSHLASATGNRCWAFIIVTCFDFDAMKRLASLLTLGFMLPPIAYCVQPWYKLFATDSHVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGGLVDNKAVDYDVGGLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAWVYRVVARVRDLVAYEISSHVVANPTEQTASCCLFLLQYGFDLQHLSMAFIFKPWASE
Homology
BLAST of Lsi02G000440 vs. ExPASy TrEMBL
Match: A0A4Y1QW81 (Exonuclease family protein OS=Prunus dulcis OX=3755 GN=Prudu_004819 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-09
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 139 LENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAW 198
           L++ Q  I  +V+ S S+++G EA NEK  +K N+HV  E DP F FDH   +S+ +   
Sbjct: 158 LKDQQACITSNVNTSTSSINGSEATNEKWFVKPNVHVPPEGDPLFPFDHGNPISQSSRFG 217

Query: 199 VYRVVARVRDLVAYEISSHVVAN 222
           V R V  VRDL+ Y+ISS+VVA+
Sbjct: 218 VQRTVTWVRDLIVYDISSYVVAH 240

BLAST of Lsi02G000440 vs. ExPASy TrEMBL
Match: A0A7I8KE02 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_05006594 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-06
Identity = 52/163 (31.90%), Postives = 73/163 (44.79%), Query Frame = 0

Query: 83  KNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGGLVDNKAVDYDVGGLENH 142
           +++LV+ +E ++G+GD       V +PILA V+R+V           + +D DVG + + 
Sbjct: 2   EHHLVVAAEMVIGDGDRRRAVNSVDEPILAVVERIVTPS-----PSERPMDDDVGHVLHG 61

Query: 143 QTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAWVYRV 202
                GDV G ASAVDG        LL  + HV  E DP  G      V E  W W   +
Sbjct: 62  DAGPAGDVHGGASAVDG--------LL--DGHVVGEDDPK-GLFLNDGVPEGAWFWGDHI 121

Query: 203 VARVRDLVAYEISSHVVANPTEQTASCCLFLLQYGFDLQHLSM 246
              +  +         +  P  Q+ASCC F  Q G   Q  SM
Sbjct: 122 FPFLPPMA-------FLPKPMAQSASCCRFCSQLGSHRQQSSM 141

BLAST of Lsi02G000440 vs. ExPASy TrEMBL
Match: C4IZH1 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 54/186 (29.03%), Postives = 77/186 (41.40%), Query Frame = 0

Query: 60  PWYKLFA---------TDSHVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPI 119
           PW+ L           +D H  +  + V   +++++V+V E  VG+GD  G   DV + +
Sbjct: 142 PWHPLHEASAEVVEGDSDLHDLVLGMLVAGAEEHDIVVVGEVAVGDGDAGGLGDDVDEAV 201

Query: 120 LAAVQRVVVNPHFGG---------------------------------LVDNKAVDYDVG 179
           LA  +  VV PH GG                                 +VD   VD DV 
Sbjct: 202 LAVGEGEVVQPHVGGAEDGDAVAVGDGAPAEVVRRVADVAAVLVGGDDVVDVDVVDDDVV 261

Query: 180 GLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWA 204
                + R  GD    A+AV+G  AA+++ LLK + H   E DP    D   A  ER  A
Sbjct: 262 DELQRELRAVGDAHLHAAAVNGLVAADDELLLKRDDHGLGEGDPQ-RLDLDDAPPERAGA 321

BLAST of Lsi02G000440 vs. ExPASy TrEMBL
Match: A0A444D7Y4 (Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_00043216 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 43/128 (33.59%), Postives = 60/128 (46.88%), Query Frame = 0

Query: 86  LVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGG-------------------- 145
           LV+V E IVG+G+ SG    + +PI A  QR VV+P   G                    
Sbjct: 16  LVVVGEVIVGDGNGSGAHDGINEPIGAVGQRAVVDPDVAGAEDGNAIAVGHGPPSIVGGG 75

Query: 146 -----------LVDNKAVDYDVGGLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIH 183
                      +VD +AVD DVG + +      GDVD  A+ VD  EA +++ LL+ + H
Sbjct: 76  AADHGVPGGLAIVDVEAVDDDVGDVLDGDASAVGDVDVGAAPVDRLEAVHDELLLERDHH 135

BLAST of Lsi02G000440 vs. ExPASy TrEMBL
Match: A0A151TQ30 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008314 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-04
Identity = 46/165 (27.88%), Postives = 68/165 (41.21%), Query Frame = 0

Query: 70  HVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGGLVDN 129
           H P+  + ++V+KK+NLV+V E  VG+GD  GP   V Q + A  +  +V+P   G  D 
Sbjct: 52  HSPVGQVLIVVSKKHNLVVVREVTVGDGDSGGPHDGVDQAVRAVREGAMVDPDLPGAEDG 111

Query: 130 K-------------------------------AVDYDVGGLENHQTRIPGDVDGSASAVD 189
                                            VD DV  +      +P  +   A+ V 
Sbjct: 112 NPVAVRFPSPADVRGAGADVGVPGGGAVVHVDVVDDDVRHVLERDAPVPAHLHVGAAPVH 171

Query: 190 GGEAANEKRLLKHNIHVFSECDPD-FGFDHCCAVSERTWAWVYRV 203
             EA  ++ +L+ + HV +E DP     DH   V ER    V RV
Sbjct: 172 RLEAVEDQLVLQRDRHVAAEHDPQRLVLDH--RVPERPRNGVRRV 214

BLAST of Lsi02G000440 vs. NCBI nr
Match: BBG96110.1 (Exonuclease family protein [Prunus dulcis])

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-09
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 139 LENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAW 198
           L++ Q  I  +V+ S S+++G EA NEK  +K N+HV  E DP F FDH   +S+ +   
Sbjct: 158 LKDQQACITSNVNTSTSSINGSEATNEKWFVKPNVHVPPEGDPLFPFDHGNPISQSSRFG 217

Query: 199 VYRVVARVRDLVAYEISSHVVAN 222
           V R V  VRDL+ Y+ISS+VVA+
Sbjct: 218 VQRTVTWVRDLIVYDISSYVVAH 240

BLAST of Lsi02G000440 vs. NCBI nr
Match: KAF7820188.1 (hypothetical protein G2W53_025643 [Senna tora])

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-08
Identity = 53/162 (32.72%), Postives = 76/162 (46.91%), Query Frame = 0

Query: 70  HVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHF------ 129
           H  I  + V+V +K++LV++ E  + N D   P   + QP+ A  QR VV+P        
Sbjct: 85  HPRIRQVLVVVPQKHHLVVMPEMAIRNRDPRRPHYRIDQPVRAIRQRAVVDPDLARREDG 144

Query: 130 -----------------------GGL--VDNKAVDYDVGGLENHQTRIPGDVDGSASAVD 189
                                  GGL  VD   VD DVG +   +  + GDVD  A+AVD
Sbjct: 145 DPVAVRLAPPPHVRGAGADVGVPGGLAVVDVDVVDDDVGDVLEREAAVAGDVDVGAAAVD 204

Query: 190 GGEAANEKRLLKHNIHVFSECDPDFG-FDHCCAVSERTWAWV 200
           G EA  ++ +L+ + HV  E DP+ G  DH   V+E +W  V
Sbjct: 205 GFEAVEDELVLEGDGHVAGEDDPEGGVLDH--GVAEGSWGGV 244

BLAST of Lsi02G000440 vs. NCBI nr
Match: CAA7395931.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-06
Identity = 52/163 (31.90%), Postives = 73/163 (44.79%), Query Frame = 0

Query: 83  KNNLVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGGLVDNKAVDYDVGGLENH 142
           +++LV+ +E ++G+GD       V +PILA V+R+V           + +D DVG + + 
Sbjct: 2   EHHLVVAAEMVIGDGDRRRAVNSVDEPILAVVERIVTPS-----PSERPMDDDVGHVLHG 61

Query: 143 QTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWAWVYRV 202
                GDV G ASAVDG        LL  + HV  E DP  G      V E  W W   +
Sbjct: 62  DAGPAGDVHGGASAVDG--------LL--DGHVVGEDDPK-GLFLNDGVPEGAWFWGDHI 121

Query: 203 VARVRDLVAYEISSHVVANPTEQTASCCLFLLQYGFDLQHLSM 246
              +  +         +  P  Q+ASCC F  Q G   Q  SM
Sbjct: 122 FPFLPPMA-------FLPKPMAQSASCCRFCSQLGSHRQQSSM 141

BLAST of Lsi02G000440 vs. NCBI nr
Match: ACR34321.1 (unknown [Zea mays])

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-05
Identity = 54/186 (29.03%), Postives = 77/186 (41.40%), Query Frame = 0

Query: 60  PWYKLFA---------TDSHVPISDIAVIVTKKNNLVLVSEPIVGNGDVSGPTGDVKQPI 119
           PW+ L           +D H  +  + V   +++++V+V E  VG+GD  G   DV + +
Sbjct: 142 PWHPLHEASAEVVEGDSDLHDLVLGMLVAGAEEHDIVVVGEVAVGDGDAGGLGDDVDEAV 201

Query: 120 LAAVQRVVVNPHFGG---------------------------------LVDNKAVDYDVG 179
           LA  +  VV PH GG                                 +VD   VD DV 
Sbjct: 202 LAVGEGEVVQPHVGGAEDGDAVAVGDGAPAEVVRRVADVAAVLVGGDDVVDVDVVDDDVV 261

Query: 180 GLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIHVFSECDPDFGFDHCCAVSERTWA 204
                + R  GD    A+AV+G  AA+++ LLK + H   E DP    D   A  ER  A
Sbjct: 262 DELQRELRAVGDAHLHAAAVNGLVAADDELLLKRDDHGLGEGDPQ-RLDLDDAPPERAGA 321

BLAST of Lsi02G000440 vs. NCBI nr
Match: RWV94256.1 (hypothetical protein GW17_00043216, partial [Ensete ventricosum])

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-05
Identity = 43/128 (33.59%), Postives = 60/128 (46.88%), Query Frame = 0

Query: 86  LVLVSEPIVGNGDVSGPTGDVKQPILAAVQRVVVNPHFGG-------------------- 145
           LV+V E IVG+G+ SG    + +PI A  QR VV+P   G                    
Sbjct: 16  LVVVGEVIVGDGNGSGAHDGINEPIGAVGQRAVVDPDVAGAEDGNAIAVGHGPPSIVGGG 75

Query: 146 -----------LVDNKAVDYDVGGLENHQTRIPGDVDGSASAVDGGEAANEKRLLKHNIH 183
                      +VD +AVD DVG + +      GDVD  A+ VD  EA +++ LL+ + H
Sbjct: 76  AADHGVPGGLAIVDVEAVDDDVGDVLDGDASAVGDVDVGAAPVDRLEAVHDELLLERDHH 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4Y1QW811.8e-0945.78Exonuclease family protein OS=Prunus dulcis OX=3755 GN=Prudu_004819 PE=4 SV=1[more]
A0A7I8KE021.9e-0631.90Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_05006594 PE=4 SV... [more]
C4IZH11.6e-0529.03Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
A0A444D7Y41.6e-0533.59Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_0004321... [more]
A0A151TQ301.0e-0427.88Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008314 PE=4 S... [more]
Match NameE-valueIdentityDescription
BBG96110.13.7e-0945.78Exonuclease family protein [Prunus dulcis][more]
KAF7820188.11.4e-0832.72hypothetical protein G2W53_025643 [Senna tora][more]
CAA7395931.13.9e-0631.90unnamed protein product [Spirodela intermedia][more]
ACR34321.13.3e-0529.03unknown [Zea mays][more]
RWV94256.13.3e-0533.59hypothetical protein GW17_00043216, partial [Ensete ventricosum][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G000440.1Lsi02G000440.1mRNA