Lsi02G000170 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G000170
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane 9 superfamily member
Locationchr02: 237281 .. 238127 (-)
RNA-Seq ExpressionLsi02G000170
SyntenyLsi02G000170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACTAGAATATTTAGATTGCATTTACGTGCTAGTATTGGCAAGGTTGGATGAGATGGCAGTTTATGTAGCTTTTTGAACATCTTTCTGAGGGTTATAGAACTGTTGAAATGTGCTTCCAATAATTTTGTCTATATGTCTAGCCGCTCTGGTGACTTGGAATATAAAGCCATGCTTAATTTGTTAAACTCCCTCTGTCTTCATTCTTTTGCAGATCTTTTCTTTGCGGTGGGTCAACTGGCTTATTTATCTATGCGTATTGTTTGTACTACTACTACGCCCGCTCAGATATGTCTGGGTTTATGCAAACATCATTTTTCTTCGGCTACATGGCTTGTGTCTGCTATGGCTTCTTCCTGATGCTCGGAGCTATTGGTTTTCGAGCAGCTTTGCTTTTTGTGCGTCACATATACCGGTCCATCAAGTGCGAGTAGTCCTGGGTACCCATCACTCAATACTGAGAAGACGAATTATGTTTCTTTAACTTTTCATATTCGTAGGTTTCTATGTAGAAAAGTTACCTGCAGCAGTCCTTTTTTTTGTTCTTTTTGGTGATATGTCTTGGAAAGGGAACAGCAATTTCTTTAGATATTTTGCTCTAAGAGCAGAGCAGCAGCATGGTGGCAGGATGGATGACCGTGCCAGGCACGAACTTGGGGAACGGAGTTTGTACCATTACATTAGTTGCAACACTTTTGTTTTAATCTGAACTTTGTCCAATACATTATTATTGTTCTTCCTCTCAAGTGTCTAACACCCTTTTATGATGAAATACTCGTCCGGTCCAGGAATTCAACGTCCATTGTTCCTCAATTTTTATTTAAACCAGAAATAAGTTCACTCG

mRNA sequence

ATGAATACTAGAATATTTAGATTGCATTTACGTGCTAGTATTGGCAAGATCTTTTCTTTGCGGTGGGTCAACTGGCTTATTTATCTATGCGTATTGTTTGTACTACTACTACGCCCGCTCAGATATGTCTGGGTTTATGCAAACATCATTTTTCTTCGGCTACATGGCTTGTGTCTGCTATGGCTTCTTCCTGATGCTCGGAGCTATTGGTTTTCGAGCAGCTTTGCTTTTTGTGCGTCACATATACCGGTCCATCAAGTGCGAGTAGTCCTGGGTACCCATCACTCAATACTGAGAAGACGAATTATGTTTCTTTAACTTTTCATATTCGTAGGTTTCTATGTAGAAAAGTTACCTGCAGCAGTCCTTTTTTTTGTTCTTTTTGGTGATATGTCTTGGAAAGGGAACAGCAATTTCTTTAGATATTTTGCTCTAAGAGCAGAGCAGCAGCATGGTGGCAGGATGGATGACCGTGCCAGGCACGAACTTGGGGAACGGAGTTTGTACCATTACATTAGTTGCAACACTTTTGTTTTAATCTGAACTTTGTCCAATACATTATTATTGTTCTTCCTCTCAAGTGTCTAACACCCTTTTATGATGAAATACTCGTCCGGTCCAGGAATTCAACGTCCATTGTTCCTCAATTTTTATTTAAACCAGAAATAAGTTCACTCG

Coding sequence (CDS)

ATGAATACTAGAATATTTAGATTGCATTTACGTGCTAGTATTGGCAAGATCTTTTCTTTGCGGTGGGTCAACTGGCTTATTTATCTATGCGTATTGTTTGTACTACTACTACGCCCGCTCAGATATGTCTGGGTTTATGCAAACATCATTTTTCTTCGGCTACATGGCTTGTGTCTGCTATGGCTTCTTCCTGATGCTCGGAGCTATTGGTTTTCGAGCAGCTTTGCTTTTTGTGCGTCACATATACCGGTCCATCAAGTGCGAGTAGTCCTGGGTACCCATCACTCAATACTGAGAAGACGAATTATGTTTCTTTAA

Protein sequence

MNTRIFRLHLRASIGKIFSLRWVNWLIYLCVLFVLLLRPLRYVWVYANIIFLRLHGLCLLWLLPDARSYWFSSSFAFCASHIPVHQVRVVLGTHHSILRRRIMFL
Homology
BLAST of Lsi02G000170 vs. ExPASy TrEMBL
Match: A0A5N5N3L5 (Transmembrane 9 superfamily member OS=Salix brachista OX=2182728 GN=DKX38_005773 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 17  IFSLRWVNWLIYLCVLFVLLLRPLRYVWVYANIIFLRLHGLCLLWLLPDARSYWFSSSFA 76
           +F L W+NWL+ L +L VLLL  +RYVW++AN+IFL LHG+ LLW LP A  +WF     
Sbjct: 530 VFPLWWINWLVRLRLLLVLLLFKIRYVWLHANLIFLWLHGMRLLWFLPHAWLHWFPFFLV 589

Query: 77  FCASHIPVHQVRVVLGTH 95
            C  ++P+ QVRV  G+H
Sbjct: 590 LCPPYLPLDQVRV--GSH 605

BLAST of Lsi02G000170 vs. ExPASy TrEMBL
Match: A0A5N5N0L4 (Transmembrane 9 superfamily member OS=Salix brachista OX=2182728 GN=DKX38_005774 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.0e-11
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 17  IFSLRWVNWLIYLCVLFVLLLRPLRYVWVYANIIFLRLHGLCLLWLLPDARSYWFSSSFA 76
           +F LRW+NW+++L +L VLLL  +RYV ++AN+IFL LHG+ LLW LP A  +WFS    
Sbjct: 525 VFPLRWINWIVHLWLLPVLLLCKIRYVRLHANLIFLWLHGMRLLWFLPHAWLHWFSGFLV 584

Query: 77  FCASHIPVHQVRV 90
           F   H+P +QVR+
Sbjct: 585 FRPPHLPFYQVRI 597

BLAST of Lsi02G000170 vs. ExPASy TrEMBL
Match: A0A7J9BD90 (Transmembrane 9 superfamily member OS=Gossypium gossypioides OX=34282 GN=Gogos_018235 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-10
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 17  IFSLRWVNWLIYLCVLFVLLLRPLRYVWVYANIIFLRLHGLCLLWLLPDARSYWFSSSFA 76
           +F L W+NW +YLC+L VLLL  +RYVW YAN++ L LHG+ LL +LP A    F     
Sbjct: 463 VFPLWWINWSLYLCLLLVLLLCTIRYVWFYANLVLLWLHGVHLLRILPHAGDSGFPCLAI 522

Query: 77  FCASHIPVHQV 88
            CASHI V+QV
Sbjct: 523 LCASHIQVYQV 533

BLAST of Lsi02G000170 vs. ExPASy TrEMBL
Match: A0A0A9TK16 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.5e-07
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 23  VNWLIYLCVLFVLLLRPLRYVWVYANIIFLRLHGLCLLWLLPDARSYWFSSSFAFCASHI 82
           ++W I+L +L +LL RP+R+V ++A+++ LRLH L LLWLLP A         A CA+H+
Sbjct: 49  LHWYIHLLLLHLLLPRPVRHVRLHADVLLLRLHDLRLLWLLPHAGHRRLPCITAICAAHL 108

Query: 83  PVHQVRV 90
           PVHQVRV
Sbjct: 109 PVHQVRV 115

BLAST of Lsi02G000170 vs. ExPASy TrEMBL
Match: A9NKA2 (Uncharacterized protein OS=Picea sitchensis OX=3332 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 27/63 (42.86%), Postives = 44/63 (69.84%), Query Frame = 0

Query: 23 VNWLIYLCVLFVLLLRPLRYVWVYANIIFLRLHGLCLLWLLPDARSYWFSSSFAFCASHI 82
          +NW + + +L +LLL  + Y W++A++I L +HGL +LWLLP+A + W    F FC+ +I
Sbjct: 4  INWFVCVWILLLLLLCTIGYDWLHASVILLWIHGLHMLWLLPNAGNCWIPVFFTFCSPYI 63

Query: 83 PVH 86
          P+H
Sbjct: 64 PIH 66

BLAST of Lsi02G000170 vs. NCBI nr
Match: KAB5560816.1 (hypothetical protein DKX38_005773 [Salix brachista])

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-11
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 17  IFSLRWVNWLIYLCVLFVLLLRPLRYVWVYANIIFLRLHGLCLLWLLPDARSYWFSSSFA 76
           +F L W+NWL+ L +L VLLL  +RYVW++AN+IFL LHG+ LLW LP A  +WF     
Sbjct: 530 VFPLWWINWLVRLRLLLVLLLFKIRYVWLHANLIFLWLHGMRLLWFLPHAWLHWFPFFLV 589

Query: 77  FCASHIPVHQVRVVLGTH 95
            C  ++P+ QVRV  G+H
Sbjct: 590 LCPPYLPLDQVRV--GSH 605

BLAST of Lsi02G000170 vs. NCBI nr
Match: KAB5560817.1 (hypothetical protein DKX38_005774 [Salix brachista])

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-11
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 17  IFSLRWVNWLIYLCVLFVLLLRPLRYVWVYANIIFLRLHGLCLLWLLPDARSYWFSSSFA 76
           +F LRW+NW+++L +L VLLL  +RYV ++AN+IFL LHG+ LLW LP A  +WFS    
Sbjct: 525 VFPLRWINWIVHLWLLPVLLLCKIRYVRLHANLIFLWLHGMRLLWFLPHAWLHWFSGFLV 584

Query: 77  FCASHIPVHQVRV 90
           F   H+P +QVR+
Sbjct: 585 FRPPHLPFYQVRI 597

BLAST of Lsi02G000170 vs. NCBI nr
Match: MBA0734305.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 17  IFSLRWVNWLIYLCVLFVLLLRPLRYVWVYANIIFLRLHGLCLLWLLPDARSYWFSSSFA 76
           +F L W+NW +YLC+L VLLL  +RYVW YAN++ L LHG+ LL +LP A    F     
Sbjct: 463 VFPLWWINWSLYLCLLLVLLLCTIRYVWFYANLVLLWLHGVHLLRILPHAGDSGFPCLAI 522

Query: 77  FCASHIPVHQV 88
            CASHI V+QV
Sbjct: 523 LCASHIQVYQV 533

BLAST of Lsi02G000170 vs. NCBI nr
Match: RWW51199.1 (hypothetical protein BHE74_00042481 [Ensete ventricosum] >RZS17481.1 hypothetical protein BHM03_00049625 [Ensete ventricosum])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 0

Query: 20 LRWVNWLIYLCVLFVLLLRPLRYVWVYANIIFLRLHGLCLLWLLPDARSYWFSSSFAFCA 79
          +R +NW I + +L +LLL  LR+V VYA+I    +HGL LLW+LP+A   W    FA CA
Sbjct: 1  MRRINWPICIWILLLLLLCTLRHVRVYADIFLFWVHGLHLLWVLPNAWDGWLPCCFALCA 60

Query: 80 SHIPVHQV 88
           HI +HQV
Sbjct: 61 PHISIHQV 68

BLAST of Lsi02G000170 vs. NCBI nr
Match: CAG7899780.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 17  IFSLRWVNWLIYLCVLFVLLLRPLRYVWVYANIIFLRLHGLCLLWLLPDARSYWFSSSFA 76
           I  +RWV+  +YL +L +LLLR +R+VW++ANI+ LR+HGL LL +L +AR         
Sbjct: 356 IIPMRWVDRFVYLRLLLILLLRTIRHVWIHANIVLLRVHGLHLLRVLLNARDCRLPRCTF 415

Query: 77  FCASHIPVHQVRVVLGT 94
             +SH+PV+Q+R +L +
Sbjct: 416 LRSSHLPVYQMRKMLSS 432

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5N5N3L51.4e-1151.28Transmembrane 9 superfamily member OS=Salix brachista OX=2182728 GN=DKX38_005773... [more]
A0A5N5N0L43.0e-1152.05Transmembrane 9 superfamily member OS=Salix brachista OX=2182728 GN=DKX38_005774... [more]
A0A7J9BD907.4e-1053.52Transmembrane 9 superfamily member OS=Gossypium gossypioides OX=34282 GN=Gogos_0... [more]
A0A0A9TK164.5e-0750.75Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A9NKA22.2e-0642.86Uncharacterized protein OS=Picea sitchensis OX=3332 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
KAB5560816.12.8e-1151.28hypothetical protein DKX38_005773 [Salix brachista][more]
KAB5560817.16.2e-1152.05hypothetical protein DKX38_005774 [Salix brachista][more]
MBA0734305.11.5e-0953.52hypothetical protein [Gossypium gossypioides][more]
RWW51199.11.2e-0650.00hypothetical protein BHE74_00042481 [Ensete ventricosum] >RZS17481.1 hypothetica... [more]
CAG7899780.11.6e-0644.16unnamed protein product [Brassica rapa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G000170.1Lsi02G000170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0098588 bounding membrane of organelle
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane