Lsi01G020340 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G020340
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 28062153 .. 28062608 (-)
RNA-Seq ExpressionLsi01G020340
SyntenyLsi01G020340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAGTGGGTAAGCTTGAAATGCTAATGGTTCCTGATTCATACCAATCTGATGAAGAATATGCAGATTTGAACTCCAAAGCTCCAAGTCTTTTCCAATGGTCGATAAGAAGGAATAATGTTGATGTTGATAATTATATGATTAATAATGATAATGAGAATAAGGTTGATGTTGATGTTGATGTTGATGTTGATGAAGGTGATGAAGAAGCAAAAGAGGTTGATTTAGAAGAAAAGAATGAAGAGTTGTATATGGTGTGGTTTGATGCATTTTTGGCGAAACATGGGTTTGACAAAGATTATTTGGATCAATCTTCTCTACAACAAATCCACAAAACTTGGCTCCAAAAAAAGCTTACTTCTGCTCACTTCCGTTTCAAGGAGGCTGAAATTGATCTCAAATTCATCAATTTTAGATATGCTATTTGCAAACGATGGCTTTCTTCCTTATGA

mRNA sequence

ATGGAGGAAGTGGGTAAGCTTGAAATGCTAATGGTTCCTGATTCATACCAATCTGATGAAGAATATGCAGATTTGAACTCCAAAGCTCCAAGTCTTTTCCAATGGTCGATAAGAAGGAATAATGTTGATGTTGATAATTATATGATTAATAATGATAATGAGAATAAGGTTGATGTTGATGTTGATGTTGATGTTGATGAAGGTGATGAAGAAGCAAAAGAGGTTGATTTAGAAGAAAAGAATGAAGAGTTGTATATGGTGTGGTTTGATGCATTTTTGGCGAAACATGGGTTTGACAAAGATTATTTGGATCAATCTTCTCTACAACAAATCCACAAAACTTGGCTCCAAAAAAAGCTTACTTCTGCTCACTTCCGTTTCAAGGAGGCTGAAATTGATCTCAAATTCATCAATTTTAGATATGCTATTTGCAAACGATGGCTTTCTTCCTTATGA

Coding sequence (CDS)

ATGGAGGAAGTGGGTAAGCTTGAAATGCTAATGGTTCCTGATTCATACCAATCTGATGAAGAATATGCAGATTTGAACTCCAAAGCTCCAAGTCTTTTCCAATGGTCGATAAGAAGGAATAATGTTGATGTTGATAATTATATGATTAATAATGATAATGAGAATAAGGTTGATGTTGATGTTGATGTTGATGTTGATGAAGGTGATGAAGAAGCAAAAGAGGTTGATTTAGAAGAAAAGAATGAAGAGTTGTATATGGTGTGGTTTGATGCATTTTTGGCGAAACATGGGTTTGACAAAGATTATTTGGATCAATCTTCTCTACAACAAATCCACAAAACTTGGCTCCAAAAAAAGCTTACTTCTGCTCACTTCCGTTTCAAGGAGGCTGAAATTGATCTCAAATTCATCAATTTTAGATATGCTATTTGCAAACGATGGCTTTCTTCCTTATGA

Protein sequence

MEEVGKLEMLMVPDSYQSDEEYADLNSKAPSLFQWSIRRNNVDVDNYMINNDNENKVDVDVDVDVDEGDEEAKEVDLEEKNEELYMVWFDAFLAKHGFDKDYLDQSSLQQIHKTWLQKKLTSAHFRFKEAEIDLKFINFRYAICKRWLSSL
Homology
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BLAST of Lsi01G020340 vs. NCBI nr
Match: KAG6607616.1 (hypothetical protein SDJN03_00958, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-13
Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = 0 

Query: 1   MEEVGKLEMLMVPDSYQSDEEYADLNSKAPSLFQWSIRRNNVDVDNYMINNDNENKVDVD 60
           MEE+G +E L+V DSY S EE             + I RNN    +  + +       + 
Sbjct: 189 MEELGNIEDLVVADSYDSQEEQE----------CYFIIRNNTATSSLSLPSHPPQATTLP 248

Query: 61  VDVD------VDEGDEEAKEVDLEEKNEE------LYMVWFDAFLAKHGFDKDYLD--QS 120
              D       ++  E+ +E++ EE  EE       Y  WF  F++KHG D  +LD   S
Sbjct: 249 PSSDQNSYKRAEQEQEQEQELEEEEPEEEEACCFKFYEEWFHEFVSKHGLDMKHLDVNHS 308

Query: 121 SLQQIHKTWLQKKLTSAHFRFKEAEIDLKFINFRYAICKRWLSSL 152
            +Q++ K W+++++ +A  R KEAEID+  IN RYAICK+WLSSL
Sbjct: 309 LVQELEKLWVKRQVAAAQMRSKEAEIDINLINTRYAICKQWLSSL 343

The following BLAST results are available for this feature:
BLAST of Lsi01G020340 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G020340 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G020340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607616.12.5e-1335.76hypothetical protein SDJN03_00958, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lsi01G020340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G020340.1Lsi01G020340.1mRNA