Lsi01G020210 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G020210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	50S ribosomal protein L18
Location	chr01: 27642100 .. 27642444 (+)
RNA-Seq Expression	Lsi01G020210
Synteny	Lsi01G020210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAAGTGATCCACTCTGAAACAGCCACTGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTTCAAAGATTGGAAAATTGTTGGGAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCCGTGAGGGAAGCAGGTATTAAGCTACTTTGA

mRNA sequence

ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAAGTGATCCACTCTGAAACAGCCACTGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTTCAAAGATTGGAAAATTGTTGGGAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCCGTGAGGGAAGCAGGTATTAAGCTACTTTGA

Coding sequence (CDS)

ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAAGTGATCCACTCTGAAACAGCCACTGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTTCAAAGATTGGAAAATTGTTGGGAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCCGTGAGGGAAGCAGGTATTAAGCTACTTTGA

Protein sequence

MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL

Homology

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BLAST of Lsi01G020210 vs. ExPASy Swiss-Prot
Match: A8IAP8 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rplR PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-10
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLK 80
           L +H T+K + AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   K
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ AV V  +    YHG+VKA+ +  RE G++
Sbjct: 89  GVTAV-VFDRGAYIYHGRVKALAEGAREGGLQ 119

[Close]

BLAST of Lsi01G020210 vs. ExPASy Swiss-Prot
Match: P52863 (50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-10
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLK 80
           L +H T + V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+  V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVETVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of Lsi01G020210 vs. ExPASy Swiss-Prot
Match: B7VLE1 (50S ribosomal protein L18 OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rplR PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLK 80
           L +H T + V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVISANGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAVAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ +V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVASVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of Lsi01G020210 vs. ExPASy Swiss-Prot
Match: B8EBI9 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS223) OX=407976 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLK 80
           L +H T + + AQVI+ E A V +AAS+ EKA++  ++ST +V AA  +GK + ER + K
Sbjct: 26  LVVHRTPRHIYAQVINPE-AQVLAAASTVEKAVKELLKSTGNVDAAKAVGKFVAERAIEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ +V    +   KYHG+V A+ D+ REAG+K
Sbjct: 86  GVTSVAFD-RSGFKYHGRVAALADAAREAGLK 115

[Close]

BLAST of Lsi01G020210 vs. ExPASy Swiss-Prot
Match: A3DA56 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) OX=325240 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLK 80
           L +H T + + AQVI+ E A V +AAS+ EKA++  ++ST +V AA  +GK + ER + K
Sbjct: 26  LVVHRTPRHIYAQVINPE-AQVLAAASTVEKAVKELLKSTGNVDAAKAVGKFVAERAIEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ +V    +   KYHG+V A+ D+ REAG+K
Sbjct: 86  GVTSVAFD-RSGFKYHGRVAALADAAREAGLK 115

[Close]

BLAST of Lsi01G020210 vs. ExPASy TrEMBL
Match: A0A5D3DYC1 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00840 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Lsi01G020210 vs. ExPASy TrEMBL
Match: A0A1S3CHJ0 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103500999 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Lsi01G020210 vs. ExPASy TrEMBL
Match: A0A6J1HE21 (uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC111462025 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 110/114 (96.49%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Lsi01G020210 vs. ExPASy TrEMBL
Match: A0A6J1I0R8 (uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.7e-50
Identity = 109/114 (95.61%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEK LRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Lsi01G020210 vs. ExPASy TrEMBL
Match: A0A0A0L0Z6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437000 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.0e-49
Identity = 108/114 (94.74%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Lsi01G020210 vs. NCBI nr
Match: KAG6590442.1 (hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023978.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.4 bits (529), Expect = 3.3e-50
Identity = 110/114 (96.49%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Lsi01G020210 vs. NCBI nr
Match: XP_008462699.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >KAA0046517.1 50S ribosomal protein L18 [Cucumis melo var. makuwa] >TYK28743.1 50S ribosomal protein L18 [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 3.3e-50
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Lsi01G020210 vs. NCBI nr
Match: XP_022961444.1 (uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 uncharacterized protein LOC111462025 [Cucurbita moschata])

HSP 1 Score: 208.0 bits (528), Expect = 4.3e-50
Identity = 110/114 (96.49%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Lsi01G020210 vs. NCBI nr
Match: XP_022968817.1 (uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968820.1 uncharacterized protein LOC111467940 [Cucurbita maxima])

HSP 1 Score: 206.8 bits (525), Expect = 9.6e-50
Identity = 109/114 (95.61%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEK LRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Lsi01G020210 vs. NCBI nr
Match: XP_023515963.1 (uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49
Identity = 108/114 (94.74%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPRLTQYLKPY+LKMHFTNK+VSAQVIHS+TATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYILKMHFTNKYVSAQVIHSKTATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Lsi01G020210 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 174.9 bits (442), Expect = 3.8e-44
Identity = 91/114 (79.82%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPP V+PPRL  YLKPYVLKMHFTNKFV AQVIHS TATVA +ASSQEKALR +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAASKIGK+LGERLL+K IPAV + +K+EQ+YHGKVKAV+DSVREAG+KLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

[Close]

BLAST of Lsi01G020210 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 33/101 (32.67%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 11  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIG 70
           R   Y++P++L + F+ KF+ A+V+H  T+ V S A++  + +R+++ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI 112
           KL+ ER +   + AV    ++ ++  GK+  V+D+++E GI
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]

BLAST of Lsi01G020210 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 29/101 (28.71%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 11  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIG 70
           R   Y++P+ L +  + +FVSA + H  T    + A +  K +++ + S  D+ A   IG
Sbjct: 82  RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 141

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI 112
           ++L ER     +       + + K+ GK++AVV S+ + GI
Sbjct: 142 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of Lsi01G020210 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 29/101 (28.71%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 11  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIG 70
           R   Y++P+ L +  + +FVSA + H  T    + A +  K +++ + S  D+ A   IG
Sbjct: 127 RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 186

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI 112
           ++L ER     +       + + K+ GK++AVV S+ + GI
Sbjct: 187 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of Lsi01G020210 vs. TAIR 10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04
Identity = 32/111 (28.83%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 16  LKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAASKIGKLL 75
           LK YVL++  + K+++A V+      + + AS+ E  +++S+E  R  +  AA+ +G++L
Sbjct: 4   LKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVL 63

Query: 76  GERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVVDSVREAGIKLL 115
             RL ++G+       +   +K+E +  G     KV AV++S+R  G+ L+
Sbjct: 64  AMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLI 114

The following BLAST results are available for this feature:

BLAST of Lsi01G020210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8IAP8	4.5e-10	44.57	50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5...	[more]
P52863	5.9e-10	44.57	50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1	[more]
B7VLE1	1.0e-09	43.48	50S ribosomal protein L18 OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rplR ...	[more]
B8EBI9	1.3e-09	43.48	50S ribosomal protein L18 OS=Shewanella baltica (strain OS223) OX=407976 GN=rplR...	[more]
A3DA56	1.3e-09	43.48	50S ribosomal protein L18 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) O...	[more]

BLAST of Lsi01G020210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYC1	1.6e-50	96.49	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CHJ0	1.6e-50	96.49	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103500999 PE=4 SV=1	[more]
A0A6J1HE21	2.1e-50	96.49	uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC1114620...	[more]
A0A6J1I0R8	4.7e-50	95.61	uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940...	[more]
A0A0A0L0Z6	1.0e-49	94.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437000 PE=4 SV=1	[more]

BLAST of Lsi01G020210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590442.1	3.3e-50	96.49	hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008462699.1	3.3e-50	96.49	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >KAA0046517.1 50S ribosomal ...	[more]
XP_022961444.1	4.3e-50	96.49	uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 unchar...	[more]
XP_022968817.1	9.6e-50	95.61	uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharac...	[more]
XP_023515963.1	1.3e-49	94.74	uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi01G020210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27820.1	3.8e-44	79.82	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	1.6e-10	32.67	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	2.8e-07	28.71	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	2.8e-07	28.71	Ribosomal L18p/L5e family protein	[more]
AT3G45020.1	1.0e-04	28.83	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 20..113 e-value: 4.2E-17 score: 62.6
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..114
None	No IPR available	GENE3D	3.30.420.100		coord: 11..113 e-value: 4.0E-24 score: 87.3
None	No IPR available	PANTHER	PTHR12899:SF6	OS03G0694800 PROTEIN	coord: 1..114
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 11..111 e-value: 3.96616E-27 score: 94.1439
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 13..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G020210.1	Lsi01G020210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome