Lsi01G020180 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCATGTTGGTGAACATCAGAGCATTCATCTCTAAATTTTTAAGATTTGACATTTAAACAACATTCTAGGAGGACATTTAGCCCGGAAGTCTTCACAATTTCCAATCTGGTGTTTTTAACATTATATTTCTCCAGTTGCTTGCAGATAGCAAGGGCCTTTGGTGCTTCTCATATTATTGCCGTCGATGTTCAGGATGATAAACTGCTAAAAGCGAAGACAAGTGGTGCTACTCATACTATTAATTCTCGTAAAGAAGATGCTATTGAAAAGATAAGAGTATGTACTGTATGCCTTAATAAAAGTTTCCAAGATTCTGCTTAAGAACAAGTTATCGTACGTATCATGGATCATGGGAAACCAGTAATATGCACGGTAGATGGAATCATTATTTTGTTGTGTTTGATTATTATAATCTTTTCTTGGGTTCAATTTGGTATTTTTTTTTTTTTTTTTAACTAAGAGAATACCTTAGTCTCATGCTTTAAATTATTTACGTGTCCTGGTTTTCCTGCATCTCAATACTTCATCTAATTCAAAATTTTTGTATTTTTATAAAAGCTGTGTTTATATTTCAAAGTTTGGGAGAGAGAATTATTGATTCAAATGTATAACATGAGGTGTATTACTAAGTTGACTTGAATATAAGGTGTGGCGTTGGGTCTTCGAAATCCAAGCCTAGACAGAGACATGAAATATAACTAAGGACCAAACATCACTGGATCCCTTTCCAACTCTCTAAACACTCTATTATTCCGCTCATCCCAAAGATCCCACATAATTGCACACACCCCAATGAGCCAAAGTAACGACCTTCTCACGTAAGGGTAGATGGAACCAAATGTTTGAAAGAAATCACTCCAAATAGCTCTCACGAACTCGCAACTCCAAAGAATATTATCCAAGTCTTCTCCGTCCTTCGGTCAAAGAATACAACAAAAGGGATCAACAAAAGGTAAAGAACTTGTCTTTTCTTGGGATCTTTATCCTCCAAAGAGCAGAAAAATAGACTCACTTAAGGGGAAAGGATCTACAAGACTACGCTAGAAAGGATTACACTAGAATCCCTCCGAAGGGTTGGGACTCCATACCCTAAGATCATTTCTCCCTGGTCTAAAGACAATCGCCTCGAGCAAGGCCAAAAGAGATTGGACAAAGAGGGACAAAAACCAAACAAAAAAGACAAGGTGCTCCTTGACCCAACTAAAAAATCGAACACCACACAATTGTTGAAAGAAGACGAATGATAGACTTGGGAATGCCGGGCCACTGGTCTAAAATATCCTTCCTTCCGCCACCACTCAATGAACCAAAAGGGAGAAAGAAGGGAGCTCCTTAGAAATATCCTTCTATAAGTTTGACCTCACAAAGTTTAAATTTAGATCATTCCGGGCTTTTAGGGTATGAAAAGTGAAAGATTCTTTACATTTTTGTTTATGCAACTGGAGGGGTATTTTTTCTGTAATTCCATATTGCTGCAATGTAAGTGACTGAGTTGGTGACAGGAAATAACAGGAGGAATGGGAGTGGACATTGCTGTGGAGGCATTGGGAAGGCCACAGACGTTCATGCAGTGTACTCAAAGTGTGAAGGATGGAGGTAAAGCTGTAATGATTGGACTTGCTCAAGCGGGTTCTGTAGGCGAGATTGATATTAACCGCCTTGTTCGTAGAAAGGTCAGCCTTTTCTTCTTTTGTTTATGCTCTCTCCCTGAGGTAGCATTGATGCACGTTTTCAGCCTTTTCTTCTTTTGTTAATATGTATGCTGGGAGGGGAAAAGTGGGGAATTGTGTGAAGTATTTGGTACATATGTATGCTAGAGGGGCAAAATGGGGAATTGAGTGTAGTTAGTTAGAATGGTGCCTCATATAGGTAACAGAAGAGGGGTACGGAAAGGGTATCGGTTATTTTGGGAAGAGTAGCAATTTTGTTGGAGAGCAGCCCCCCCACGTGAGTTGGCTGGTATCGGTTATAAAGTCGTGTCTCGGAATTGATAATTAATGGAAGGCTAATTATATATTTTAGTTCTTAATGTTTATTCTCAATTTAGTCTTTATTTATTGTTTGAAGAGTACCAATTTCATCCCTTAAGGTTTGAGCATATTTCAATTTAGTCATTCATTGTTGGGGAAGGTTAAAAGTAGCATGATGAATAGAACTGCAGATAAAAAGGTAATCCAAGGTAAGAAAGTTCCTAAATCCAAGGTTAAAAAGATTATTATGTTTAACAAACAAGGCTCCATGAGCTGGAAGTTTTTGCCTCTATTTCTTTATGCACAATATGAACTGAATTTGTTAACAATGCGAGTTGGTGCAGATAAAAGTGATTGGGTCTTATGGAGGAAGAGCAAGGCAGGATCTTCCCAAGTTGGTTAAATTGGCAGAATCAGGAATTTTCAATCTTAGCGATGCGGTTTCTCGAAAGTACAAGTTCGAGGATTCAAACAAAGCATTTCAAGACCTCAATGAAGGAAAAATCATCGGTCGGGCTGTTATAGAGATTGCCTAATTGCTTCGCTGCCCCCAAATCACCACCTTTTAATCTTATGTAACTCTTCACATAAATATTATGTTACTTTCAAATAAGCCCTTATTTTTCTTGTGCCTCAAATGTCGATCTTGTCTTAGGCTTCCAAACACTATTTTCGCCCTTGTGATGTGTACTGTACATATTTAAGAAAAATTTATGAATCAAAGCCTGTTCAACTTTAGTTTGATTTGGAAAATTCTCTCTACC ATGGGCATTTGCTTGCAGATAGCAAGGGCCTTTGGTGCTTCTCATATTATTGCCGTCGATGTTCAGGATGATAAACTGCTAAAAGCGAAGACAAGTGGTGCTACTCATACTATTAATTCTCGTAAAGAAGATGCTATTGAAAAGATAAGAGAAATAACAGGAGGAATGGGAGTGGACATTGCTGTGGAGGCATTGGGAAGGCCACAGACGTTCATGCAGTGTACTCAAAGTGTGAAGGATGGAGGTAAAGCTGTAATGATTGGACTTGCTCAAGCGGGTTCTGTAGGCGAGATTGATATTAACCGCCTTGTTCGTAGAAAGGTAACAGAAGAGGGGTACGGAAAGGGTATCGGTTATTTTGGGAAGAGTAGCAATTTTGTTGGAGAGCAGCCCCCCCACATAAAAGTGATTGGGTCTTATGGAGGAAGAGCAAGGCAGGATCTTCCCAAGTTGGTTAAATTGGCAGAATCAGGAATTTTCAATCTTAGCGATGCGGTTTCTCGAAAGTACAAGTTCGAGGATTCAAACAAAGCATTTCAAGACCTCAATGAAGGAAAAATCATCGGTCGGGCTGTTATAGAGATTGCCTAATTGCTTCGCTGCCCCCAAATCACCACCTTTTAATCTTATGTAACTCTTCACATAAATATTATGTTACTTTCAAATAAGCCCTTATTTTTCTTGTGCCTCAAATGTCGATCTTGTCTTAGGCTTCCAAACACTATTTTCGCCCTTGTGATGTGTACTGTACATATTTAAGAAAAATTTATGAATCAAAGCCTGTTCAACTTTAGTTTGATTTGGAAAATTCTCTCTACC ATGGGCATTTGCTTGCAGATAGCAAGGGCCTTTGGTGCTTCTCATATTATTGCCGTCGATGTTCAGGATGATAAACTGCTAAAAGCGAAGACAAGTGGTGCTACTCATACTATTAATTCTCGTAAAGAAGATGCTATTGAAAAGATAAGAGAAATAACAGGAGGAATGGGAGTGGACATTGCTGTGGAGGCATTGGGAAGGCCACAGACGTTCATGCAGTGTACTCAAAGTGTGAAGGATGGAGGTAAAGCTGTAATGATTGGACTTGCTCAAGCGGGTTCTGTAGGCGAGATTGATATTAACCGCCTTGTTCGTAGAAAGGTAACAGAAGAGGGGTACGGAAAGGGTATCGGTTATTTTGGGAAGAGTAGCAATTTTGTTGGAGAGCAGCCCCCCCACATAAAAGTGATTGGGTCTTATGGAGGAAGAGCAAGGCAGGATCTTCCCAAGTTGGTTAAATTGGCAGAATCAGGAATTTTCAATCTTAGCGATGCGGTTTCTCGAAAGTACAAGTTCGAGGATTCAAACAAAGCATTTCAAGACCTCAATGAAGGAAAAATCATCGGTCGGGCTGTTATAGAGATTGCCTAA MGICLQIARAFGASHIIAVDVQDDKLLKAKTSGATHTINSRKEDAIEKIREITGGMGVDIAVEALGRPQTFMQCTQSVKDGGKAVMIGLAQAGSVGEIDINRLVRRKVTEEGYGKGIGYFGKSSNFVGEQPPHIKVIGSYGGRARQDLPKLVKLAESGIFNLSDAVSRKYKFEDSNKAFQDLNEGKIIGRAVIEIA Homology
BLAST of Lsi01G020180 vs. ExPASy Swiss-Prot
Match: A4YGN0 (Succinate-semialdehyde dehydrogenase (acetylating) OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2) OX=399549 GN=Msed_1424 PE=1 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 8.9e-22 Identity = 65/189 (34.39%), Postives = 101/189 (53.44%), Query Frame = 0
BLAST of Lsi01G020180 vs. ExPASy Swiss-Prot
Match: Q06004 (Sorbitol dehydrogenase OS=Bacillus subtilis (strain 168) OX=224308 GN=gutB PE=1 SV=3) HSP 1 Score: 79.3 bits (194), Expect = 5.2e-14 Identity = 48/121 (39.67%), Postives = 64/121 (52.89%), Query Frame = 0
BLAST of Lsi01G020180 vs. ExPASy Swiss-Prot
Match: P80094 (S-(hydroxymethyl)mycothiol dehydrogenase OS=Amycolatopsis methanolica OX=1814 PE=1 SV=2) HSP 1 Score: 79.3 bits (194), Expect = 5.2e-14 Identity = 52/190 (27.37%), Postives = 89/190 (46.84%), Query Frame = 0
BLAST of Lsi01G020180 vs. ExPASy Swiss-Prot
Match: A7Z4X0 (L-threonine 3-dehydrogenase OS=Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / FZB42) OX=326423 GN=tdh PE=3 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12 Identity = 53/184 (28.80%), Postives = 86/184 (46.74%), Query Frame = 0
BLAST of Lsi01G020180 vs. ExPASy Swiss-Prot
Match: Q7NXH5 (L-threonine 3-dehydrogenase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) OX=243365 GN=tdh PE=3 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 3.8e-12 Identity = 48/192 (25.00%), Postives = 93/192 (48.44%), Query Frame = 0
BLAST of Lsi01G020180 vs. ExPASy TrEMBL
Match: A0A0A0KXY5 (ADH_zinc_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G337910 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 8.2e-79 Identity = 163/195 (83.59%), Postives = 167/195 (85.64%), Query Frame = 0
BLAST of Lsi01G020180 vs. ExPASy TrEMBL
Match: A0A1S3BLX2 (alcohol dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103491279 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 1.8e-78 Identity = 163/193 (84.46%), Postives = 165/193 (85.49%), Query Frame = 0
BLAST of Lsi01G020180 vs. ExPASy TrEMBL
Match: A0A6J1E0R2 (alcohol dehydrogenase 1B OS=Momordica charantia OX=3673 GN=LOC111024875 PE=4 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 4.2e-75 Identity = 155/192 (80.73%), Postives = 161/192 (83.85%), Query Frame = 0
BLAST of Lsi01G020180 vs. ExPASy TrEMBL
Match: A0A6J1HTG6 (alcohol dehydrogenase 1 OS=Cucurbita maxima OX=3661 GN=LOC111466018 PE=4 SV=1) HSP 1 Score: 287.7 bits (735), Expect = 3.6e-74 Identity = 149/193 (77.20%), Postives = 163/193 (84.46%), Query Frame = 0
BLAST of Lsi01G020180 vs. ExPASy TrEMBL
Match: A0A6J1EEI1 (uncharacterized protein LOC111432503 OS=Cucurbita moschata OX=3662 GN=LOC111432503 PE=4 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 2.3e-73 Identity = 148/193 (76.68%), Postives = 162/193 (83.94%), Query Frame = 0
BLAST of Lsi01G020180 vs. NCBI nr
Match: XP_038903768.1 (alcohol dehydrogenase [Benincasa hispida]) HSP 1 Score: 307.8 bits (787), Expect = 6.9e-80 Identity = 165/193 (85.49%), Postives = 167/193 (86.53%), Query Frame = 0
BLAST of Lsi01G020180 vs. NCBI nr
Match: XP_004142661.1 (uncharacterized protein LOC101207246 [Cucumis sativus] >KAE8649602.1 hypothetical protein Csa_012208 [Cucumis sativus]) HSP 1 Score: 304.3 bits (778), Expect = 7.6e-79 Identity = 163/192 (84.90%), Postives = 165/192 (85.94%), Query Frame = 0
BLAST of Lsi01G020180 vs. NCBI nr
Match: XP_008449387.1 (PREDICTED: alcohol dehydrogenase [Cucumis melo]) HSP 1 Score: 302.0 bits (772), Expect = 3.8e-78 Identity = 163/193 (84.46%), Postives = 165/193 (85.49%), Query Frame = 0
BLAST of Lsi01G020180 vs. NCBI nr
Match: XP_022158376.1 (alcohol dehydrogenase 1B [Momordica charantia]) HSP 1 Score: 290.8 bits (743), Expect = 8.7e-75 Identity = 155/192 (80.73%), Postives = 161/192 (83.85%), Query Frame = 0
BLAST of Lsi01G020180 vs. NCBI nr
Match: XP_022966329.1 (alcohol dehydrogenase 1 [Cucurbita maxima]) HSP 1 Score: 287.7 bits (735), Expect = 7.4e-74 Identity = 149/193 (77.20%), Postives = 163/193 (84.46%), Query Frame = 0
BLAST of Lsi01G020180 vs. TAIR 10
Match: AT5G63620.1 (GroES-like zinc-binding alcohol dehydrogenase family protein ) HSP 1 Score: 272.7 bits (696), Expect = 2.3e-73 Identity = 143/192 (74.48%), Postives = 156/192 (81.25%), Query Frame = 0
BLAST of Lsi01G020180 vs. TAIR 10
Match: AT5G63620.2 (GroES-like zinc-binding alcohol dehydrogenase family protein ) HSP 1 Score: 270.0 bits (689), Expect = 1.5e-72 Identity = 142/192 (73.96%), Postives = 155/192 (80.73%), Query Frame = 0
BLAST of Lsi01G020180 vs. TAIR 10
Match: AT1G32780.1 (GroES-like zinc-binding dehydrogenase family protein ) HSP 1 Score: 59.7 bits (143), Expect = 3.0e-09 Identity = 54/193 (27.98%), Postives = 79/193 (40.93%), Query Frame = 0
BLAST of Lsi01G020180 vs. TAIR 10
Match: AT4G22110.1 (GroES-like zinc-binding dehydrogenase family protein ) HSP 1 Score: 59.7 bits (143), Expect = 3.0e-09 Identity = 58/186 (31.18%), Postives = 81/186 (43.55%), Query Frame = 0
BLAST of Lsi01G020180 vs. TAIR 10
Match: AT4G22110.2 (GroES-like zinc-binding dehydrogenase family protein ) HSP 1 Score: 59.7 bits (143), Expect = 3.0e-09 Identity = 58/186 (31.18%), Postives = 81/186 (43.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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