Lsi01G020170 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G020170
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAlcohol dehydrogenase
Locationchr01: 27562268 .. 27562471 (+)
RNA-Seq ExpressionLsi01G020170
SyntenyLsi01G020170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGTATGGGAGGTCTTGCTGAATATTGTGTCACTCCAGCGCATGGAGTGTCAATTTTACCAAAATCGTTACCATACACAGAGTCGGCAATTCTAGGATGTGCAGTTTTTACTGCATATGGTGCCATGGCCCATGCTGCTGAAGTGCGCCCTGGGGATTCTGTTGCTATTATTGGAATTGGAGGTGTTGGTTCAAGGTAA

mRNA sequence

ATGTATAGTATGGGAGGTCTTGCTGAATATTGTGTCACTCCAGCGCATGGAGTGTCAATTTTACCAAAATCGTTACCATACACAGAGTCGGCAATTCTAGGATGTGCAGTTTTTACTGCATATGGTGCCATGGCCCATGCTGCTGAAGTGCGCCCTGGGGATTCTGTTGCTATTATTGGAATTGGAGGTGTTGGTTCAAGGTAA

Coding sequence (CDS)

ATGTATAGTATGGGAGGTCTTGCTGAATATTGTGTCACTCCAGCGCATGGAGTGTCAATTTTACCAAAATCGTTACCATACACAGAGTCGGCAATTCTAGGATGTGCAGTTTTTACTGCATATGGTGCCATGGCCCATGCTGCTGAAGTGCGCCCTGGGGATTCTGTTGCTATTATTGGAATTGGAGGTGTTGGTTCAAGGTAA

Protein sequence

MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIGIGGVGSR
Homology
BLAST of Lsi01G020170 vs. ExPASy Swiss-Prot
Match: A4YGN0 (Succinate-semialdehyde dehydrogenase (acetylating) OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2) OX=399549 GN=Msed_1424 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-08
Identity = 26/61 (42.62%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 5   GGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIGIGGV 64
           GG AEY +   + ++ +P+ +   + A+LGCA  T YGA++ ++++ PGD+VA+IG+GGV
Sbjct: 135 GGFAEYAIVGENALTRVPEDMDLEKVAVLGCAGLTGYGAIS-SSKIEPGDTVAVIGVGGV 194

Query: 65  G 66
           G
Sbjct: 195 G 194

BLAST of Lsi01G020170 vs. ExPASy Swiss-Prot
Match: Q7U1B9 (Alcohol dehydrogenase B OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=adhB PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.5e-08
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           M  +G  + Y V     V  +  S+P+  + ++GC V T YG+    A+VRPGD VAI+G
Sbjct: 135 MTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVG 194

Query: 61  IGGVG 66
           +GGVG
Sbjct: 195 LGGVG 199

BLAST of Lsi01G020170 vs. ExPASy Swiss-Prot
Match: P9WQC6 (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=adhB PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.5e-08
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           M  +G  + Y V     V  +  S+P+  + ++GC V T YG+    A+VRPGD VAI+G
Sbjct: 135 MTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVG 194

Query: 61  IGGVG 66
           +GGVG
Sbjct: 195 LGGVG 199

BLAST of Lsi01G020170 vs. ExPASy Swiss-Prot
Match: P9WQC7 (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=adhB PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.5e-08
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           M  +G  + Y V     V  +  S+P+  + ++GC V T YG+    A+VRPGD VAI+G
Sbjct: 135 MTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVG 194

Query: 61  IGGVG 66
           +GGVG
Sbjct: 195 LGGVG 199

BLAST of Lsi01G020170 vs. ExPASy Swiss-Prot
Match: O97764 (Zeta-crystallin OS=Bos taurus OX=9913 GN=CRYZ PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 4.7e-07
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 5   GGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIGI-GG 64
           GG AEY +   H V  LP+ L + + A +G   FTAY A+ H+A V+PG+SV + G  GG
Sbjct: 101 GGYAEYALAADHTVYTLPEKLDFKQGAAIGIPYFTAYRALLHSACVKPGESVLVHGASGG 160

Query: 65  VG 66
           VG
Sbjct: 161 VG 162

BLAST of Lsi01G020170 vs. ExPASy TrEMBL
Match: A0A0A0L305 (Oxidoreductase OS=Cucumis sativus OX=3659 GN=Csa_4G337920 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.8e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG
Sbjct: 190 MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 249

Query: 61  IGGVGSR 68
           IGGVGSR
Sbjct: 250 IGGVGSR 256

BLAST of Lsi01G020170 vs. ExPASy TrEMBL
Match: A0A5A7V7N1 (Alcohol dehydrogenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001550 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.6e-28
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEV PGDS+AIIG
Sbjct: 190 MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVCPGDSIAIIG 249

Query: 61  IGGVGSR 68
           IGGVGSR
Sbjct: 250 IGGVGSR 256

BLAST of Lsi01G020170 vs. ExPASy TrEMBL
Match: A0A1S3BLX2 (alcohol dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103491279 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.3e-27
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEV PGDS+AIIG
Sbjct: 190 MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVCPGDSIAIIG 249

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 250 IGGVGS 255

BLAST of Lsi01G020170 vs. ExPASy TrEMBL
Match: A0A6J1E0R2 (alcohol dehydrogenase 1B OS=Momordica charantia OX=3673 GN=LOC111024875 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-27
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPA+GVSILPKSLPYTESAILGCAVFTAYGAMAHAAEV+PGDSVAIIG
Sbjct: 210 MYSMGGLAEYCVTPANGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVQPGDSVAIIG 269

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 270 IGGVGS 275

BLAST of Lsi01G020170 vs. ExPASy TrEMBL
Match: A0A6A1V7A8 (Succinate-semialdehyde dehydrogenase (Acetylating) OS=Morella rubra OX=262757 GN=CJ030_MR1G029160 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-26
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCV PAH +SILP SLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVA+IG
Sbjct: 213 MYSMGGLAEYCVVPAHALSILPNSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAVIG 272

Query: 61  IGGVGSR 68
           +GGVGSR
Sbjct: 273 VGGVGSR 279

BLAST of Lsi01G020170 vs. NCBI nr
Match: XP_004142661.1 (uncharacterized protein LOC101207246 [Cucumis sativus] >KAE8649602.1 hypothetical protein Csa_012208 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 6.1e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG
Sbjct: 190 MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 249

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 250 IGGVGS 255

BLAST of Lsi01G020170 vs. NCBI nr
Match: XP_038903768.1 (alcohol dehydrogenase [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 8.0e-28
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDS+AIIG
Sbjct: 210 MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSIAIIG 269

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 270 IGGVGS 275

BLAST of Lsi01G020170 vs. NCBI nr
Match: KAA0062426.1 (alcohol dehydrogenase [Cucumis melo var. makuwa] >TYK27455.1 alcohol dehydrogenase [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEV PGDS+AIIG
Sbjct: 190 MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVCPGDSIAIIG 249

Query: 61  IGGVGSR 68
           IGGVGSR
Sbjct: 250 IGGVGSR 256

BLAST of Lsi01G020170 vs. NCBI nr
Match: XP_008449387.1 (PREDICTED: alcohol dehydrogenase [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 6.7e-27
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEV PGDS+AIIG
Sbjct: 190 MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVCPGDSIAIIG 249

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 250 IGGVGS 255

BLAST of Lsi01G020170 vs. NCBI nr
Match: XP_022158376.1 (alcohol dehydrogenase 1B [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGGLAEYCVTPA+GVSILPKSLPYTESAILGCAVFTAYGAMAHAAEV+PGDSVAIIG
Sbjct: 210 MYSMGGLAEYCVTPANGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVQPGDSVAIIG 269

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 270 IGGVGS 275

BLAST of Lsi01G020170 vs. TAIR 10
Match: AT5G63620.1 (GroES-like zinc-binding alcohol dehydrogenase family protein )

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-29
Identity = 57/66 (86.36%), Postives = 65/66 (98.48%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGG+AEYCVTPAHG++ LP+SLPY+ESAILGCAVFTAYGAMAHAAE+RPGDS+A+IG
Sbjct: 194 MYSMGGMAEYCVTPAHGLAPLPESLPYSESAILGCAVFTAYGAMAHAAEIRPGDSIAVIG 253

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 254 IGGVGS 259

BLAST of Lsi01G020170 vs. TAIR 10
Match: AT5G63620.2 (GroES-like zinc-binding alcohol dehydrogenase family protein )

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-29
Identity = 57/66 (86.36%), Postives = 65/66 (98.48%), Query Frame = 0

Query: 1   MYSMGGLAEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIG 60
           MYSMGG+AEYCVTPAHG++ LP+SLPY+ESAILGCAVFTAYGAMAHAAE+RPGDS+A+IG
Sbjct: 194 MYSMGGMAEYCVTPAHGLAPLPESLPYSESAILGCAVFTAYGAMAHAAEIRPGDSIAVIG 253

Query: 61  IGGVGS 67
           IGGVGS
Sbjct: 254 IGGVGS 259

BLAST of Lsi01G020170 vs. TAIR 10
Match: AT5G43940.1 (GroES-like zinc-binding dehydrogenase family protein )

HSP 1 Score: 41.6 bits (96), Expect = 2.9e-04
Identity = 22/58 (37.93%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 8   AEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIGIGGVG 66
           ++Y V     V+ +  + P  +  +LGC V T  GA+ + A+V PG +VAI G+G VG
Sbjct: 150 SQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVG 207

BLAST of Lsi01G020170 vs. TAIR 10
Match: AT5G43940.2 (GroES-like zinc-binding dehydrogenase family protein )

HSP 1 Score: 41.6 bits (96), Expect = 2.9e-04
Identity = 22/58 (37.93%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 8   AEYCVTPAHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIGIGGVG 66
           ++Y V     V+ +  + P  +  +LGC V T  GA+ + A+V PG +VAI G+G VG
Sbjct: 162 SQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVG 219

BLAST of Lsi01G020170 vs. TAIR 10
Match: AT1G22430.1 (GroES-like zinc-binding dehydrogenase family protein )

HSP 1 Score: 41.2 bits (95), Expect = 3.8e-04
Identity = 25/63 (39.68%), Postives = 35/63 (55.56%), Query Frame = 0

Query: 4   MGGLAEYCVTP-AHGVSILPKSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAIIGIG 63
           +   +EY V   AH V I P+ +P  ++A+L C V T  GA    A V  G ++AI G+G
Sbjct: 154 VSSFSEYTVVDIAHLVKISPE-IPVDKAALLSCGVSTGIGAAWKVANVEEGSTIAIFGLG 213

Query: 64  GVG 66
            VG
Sbjct: 214 AVG 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A4YGN04.3e-0842.62Succinate-semialdehyde dehydrogenase (acetylating) OS=Metallosphaera sedula (str... [more]
Q7U1B99.5e-0841.54Alcohol dehydrogenase B OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)... [more]
P9WQC69.5e-0841.54Alcohol dehydrogenase B OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh... [more]
P9WQC79.5e-0841.54Alcohol dehydrogenase B OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv... [more]
O977644.7e-0746.77Zeta-crystallin OS=Bos taurus OX=9913 GN=CRYZ PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0L3057.8e-29100.00Oxidoreductase OS=Cucumis sativus OX=3659 GN=Csa_4G337920 PE=4 SV=1[more]
A0A5A7V7N18.6e-2897.01Alcohol dehydrogenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32... [more]
A0A1S3BLX23.3e-2796.97alcohol dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103491279 PE=4 SV=1[more]
A0A6J1E0R25.6e-2796.97alcohol dehydrogenase 1B OS=Momordica charantia OX=3673 GN=LOC111024875 PE=4 SV=... [more]
A0A6A1V7A82.1e-2691.04Succinate-semialdehyde dehydrogenase (Acetylating) OS=Morella rubra OX=262757 GN... [more]
Match NameE-valueIdentityDescription
XP_004142661.16.1e-28100.00uncharacterized protein LOC101207246 [Cucumis sativus] >KAE8649602.1 hypothetica... [more]
XP_038903768.18.0e-2898.48alcohol dehydrogenase [Benincasa hispida][more]
KAA0062426.11.8e-2797.01alcohol dehydrogenase [Cucumis melo var. makuwa] >TYK27455.1 alcohol dehydrogena... [more]
XP_008449387.16.7e-2796.97PREDICTED: alcohol dehydrogenase [Cucumis melo][more]
XP_022158376.11.1e-2696.97alcohol dehydrogenase 1B [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT5G63620.15.9e-2986.36GroES-like zinc-binding alcohol dehydrogenase family protein [more]
AT5G63620.25.9e-2986.36GroES-like zinc-binding alcohol dehydrogenase family protein [more]
AT5G43940.12.9e-0437.93GroES-like zinc-binding dehydrogenase family protein [more]
AT5G43940.22.9e-0437.93GroES-like zinc-binding dehydrogenase family protein [more]
AT1G22430.13.8e-0439.68GroES-like zinc-binding dehydrogenase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.180.10coord: 1..67
e-value: 8.5E-19
score: 69.6
NoneNo IPR availablePANTHERPTHR43350:SF2NAD-DEPENDENT ALCOHOL DEHYDROGENASEcoord: 4..66
NoneNo IPR availablePANTHERPTHR43350NAD-DEPENDENT ALCOHOL DEHYDROGENASEcoord: 4..66
IPR011032GroES-like superfamilySUPERFAMILY50129GroES-likecoord: 3..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G020170.1Lsi01G020170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010033 response to organic substance
cellular_component GO:0005739 mitochondrion
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008270 zinc ion binding