Lsi01G020140 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G020140
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription elongation factor (TFIIS) family protein
Location	chr01: 27510061 .. 27517914 (+)
RNA-Seq Expression	Lsi01G020140
Synteny	Lsi01G020140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGGTTGGATTTAGATGATTTTCGAACCATATTAGATACAGCCGGTGTCGATGTTTGGACTTTCATCGATACAGCTATGGAGGTCGCTTCATTGGATTACGGTAATCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGCCGGAACTGTGAAACGGATCGCAACCATGACGGCCGTTCTAATGGCTGTGAAATCAAACAGAGCTCCGGTGAGGTGAAGGGAGCTTCCCCTTCGACGCTGCAGTTCGTTGTAGTGGAAGGGGATGACGATGGAGTAGACCCATATGCAGGATTGTTTGATGATGAACAGAAGAAGGTTTTGGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGAATTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTTAGAAAATGGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAAACAGCTACACTCTTAGCTGATGGTGTAAAGCTCCTCAAAATGGATATCATCAGGTTCCTGATTTTGCATACTCTCCAAATCCACACAATGGAGGTTCTGGGTCGGATAGAAATAACTCAGAACCGGAACCGAAGGGAAAATCCGTTCCAAGAAGAGATGCTCCGCCTAAACCAGCACAACCAGCTCCAATGTCGTCTTAAACTCCTTAAAATAGACAGAAAGAACAACAGAAAGAAGCAAATTTTGATTCCCACAAGCTTGTATCAGCTAGAAAAAGGTTTCAAGAGAATTATAAAGAAGCTGAAAATGCTAAAAGGCAAAGAACAATCCAAGTCATGGACATCCATGAGATCCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAGGCAGTGGTGGTGGTTCTCAAGGCAGACACTGGTGATATTTGGCAATGCAGTAAAGCAACATCTTCTAAATATCCATACGAGCACAATATAATCCTAACAAACCAAGAAAACATGAAATATATCCCACTGCTAAAGATTTCAAGAAATTTAAAGACAATGTCAACAAAAAGATCAGCGAGTAATCGAGAAAGATAATCCCTGAGTATGTTGAAGAAACCAATAGATTGCAAATATAGATAAACCAAGATCACGAAGAGCAACCTAGATTAAAAAGACCGAACTAGTGTGGGAGGTAGAGATTCTGAATAAACGAGGGAATCGAGACTTCTATTTTTAGAGAACCCACAAAACATATCAAAATGCAGTTGTGATGAGAGTGATGTTGGTAGTCTTCCATGTTCTCACCTTGACCTCCCTCTTGGGAGCAATCCTAAGCCTGTTTCTTTATGGGACCCTGTGGTGGATAAAGTTTGGAAAAGGTTAGTTTTTTGGCAAAAATTGCTTCTTCTATAAAGCTAATAGGCTTATTCTGATCATATATGTCATGAGTGGCGTTCCTGTCTACTTTTCCATTTTTAGAGCCTCGTATGAGGTGTGTAAGAATTTGGAAAGGTGGATGCACGATTTTCTTTGTTAAGGGATTGATGAAGCTAAAGTTAAGGGGTTGTATTTGATTAAATGAGAGGTCATCGAGAGATTGTTTTCCTTGGAGGGTCTTGAAATTGGGAATCTTAGGGTGCGAAACAAAGTTTTGTTTGCCAAATGGACGTGGCATTTTTCCTCTGATCCCAATTCTTTGGGACGTAGGATCATTGCTAGTAAACATGGTCCCCATTCTTTCGAGTGGTTGTTTAAGTGGGTTTAAGGTACTTATTGGAATTTATAGAAAGATATTTCGAAAGAGCTTCCTTCTTTTGTCCATTTGGTTATTGTGTGGTGGGGGAAGGGAGGGACACGTACTTCTGGGACTGGGAAGATTATTGGGTGGGGGAGAGACCTCTTTGTGCTTTTTTCCTTGTCTGTATCATTTGTCGTCCCTCAAAAATTATTTTGTCAGAGATTTTCTCGTGTGGTTTGGGAGCTTTTGTTCCTTTTCTTTCGGGTTCTGGTGCTCTCTTTCCGGTGGGGAGGCGACAGAGGTGGTTGCTTTTCTTTCTTTACTTGAGGGTCACCCCTTTAGAAGAGGGAGGAGGGATGTTAGAGTTTGGAGCCCCGATCCTTTGGGAGAGTTCTCGTGCAAATCTTTTTTTCAGTGTTTTTTTTAAACAGAAACAAAACTTTTCATTGATGAAATGAAAAGAGACTAATGCTCAAAGTACAAGAAACAAAAGAGCAAAGTTACAAACAATACCAAGATTCTTAGGATCAGGAGGTGCACTTAATTATCTCAACTAGGTTGGCACAACCACAACACCCTCATCATGTCCTTACAAAAGAGGTCCATTAGGGTTTAGGGTCAAATTGAGGCAAATGTCTTGAATAGAATAATCAGAAGAAAAAAAAACTTCGATTGGAACTCCAAGAAGAGGCTAGCAGACGAGTTGAACCGAGTCGATCCATCCAATTCAACTTTTTTTCTTGAAATACTCTCTGATTTCGTTGAAACAAAATTTCTGAAATTAAAGCTTTAAAGGTATTAGACCAAAGAATCTAAGTCTTAGAAGAGAGGAGTGGACCAACCAAAATTTGATGCAAGTTCTCTCAAGGTGACTTCCCGAACACCCAAGATAAATTGAAGAATGAAAATATCTTCCACCAACATTTCATTGTGTAAGAACATTCAAATAAGAGGTGTTGTAAGCTCTCTTTTAGTTTTTGATTGATACTTCTCCCTTAGGAGTGTCCGTCATTACGGTTTGTTGGAGGATTAAGATTCTTAAGAAGGTGAGGTTCTTTACTTGGCAAGTCCTTCACGGTCGTGCTAAAACGATGGATCGGGTTGCGAGGAAGTTGCTTTCGCTTTGTTGGGCCCTTTTGTTGTATTCTTTGTCGAAAGGCAGAGGAAGACTTCGACTATATTCTCTGATGCTATGATTTTGCGAGTAGTGTTTTCCACAGAGATGCTAGTGATATGATTGAAGAGTTCCTCCTCTATCCACCTTTTGGGGAGAAGGGGGGGATTTTGTGGGTCTTGTGGGGTAAGCAGAATGGCAGGGTGCTTAGGGGTGTGGGTAGGGAGATTTGATCCCTTGCTCGCTTCCACGTCTCTTTGTGGCTTTCGATTTCGAAGACCTTTTGTAACTATACTATAGGCACTATTTCTCATAGTTGGCGTCTCTTCTTGTAGAAGGACCTCCCCCTTTTGTTGTGGCCTTGTTTTTTTTCATGTCGGTGTATTATTTCATTTTTCTCAATTAAAGTTGTTTTCATTAATGAGGGAAAAAAAACAAACAAAATGCAATTCAGCTACCCCTTCCAAACTTGAAAATTGCTTGAAAAATCAAAACTTCTTTAAAGCAAACAGTTAGTCAAAGTCTCAAGTTCACGGGAATTCCCAAAATGAAGTTCAGCCCTAAGCAAGCCATCCAGCTAGACTTTAAGTGATGATGAATGATTTGGGATTAATTTCACAAGAATAATGGGCGACTTATCTGCTTGATCTTTTTTAACATTTTGAAATAAGGTGTCAAAACTGTGTCAAATAAACCTTTGAATTATGACCAACATGTTCCTCACTACTTGCACTAACCACTATTTCTCCATCTGAATCATAAATAGAATGGTCATTTTTAGCGGGTGAATAGCTAGACAATTAGGAAGTTCTTTTTGGGACCTCTTTTTCTTTGTACATTTTCTTTGAGTTCGTAGAATCTTTTTCATCCTAAAAAACTGATTGTTTAATTTTCTGAATTGTTGCTTTACAAAATTGAGAGTAGATGTAGACTTGGAAGATCCAAGGACAGTAGCAGAAGCACTTGTGCGGTCTAGACATGGTTAGTATGGCTTATGAAGATTTCTTTTTCCAATTCTTGTTCTTCCACCAATTGCACCCTGAGCTTGTCACTAACTTACTTCTATCATGCATTGAGAAATTAATTACTGGTAACTGATTTTACAGCGGTAGAAGGAAATGAGAAGCAGACAGCACTTGATAGGATCTCTAGGATGACAGCGATTGAGGATCTTCAAGCTTCTCATAGCCATCCTTTTGCTCCTCTTTGTATCAAGGTTGGATTTTTATTGGTGAAAGATGCTAAGATCTACAATCATTTTAGCAGAAGACTATTTGATGCCATATTTCCATAATAGGATCCTCGAGATTATTTTGATGCTCAACAAGCAAATGCCATTAAGACATTGGATGATACACGAGCTGGAATGCAACAAACTAAATGCAGTTTGAGCACTACAGAAGCATATTACTCACTGAGGAAATCCATATCTGAGATCAAATCTTCTGGATTGAATCATCCCATAATTAAACCTGAAGTTGCTCTGATGGTAAAAGCACCTGCAGCATTCTCTTGCCAAAAACATGCATTTTTGTTATCTGTATTGAAAACTCTTCTTCTGCTACCAAACTTCTAATTCTTCTTTTGTAGGTTTATAATGGATTAACTCAAAATATTTCTAGTACCAAATATCAACTAGGGAAAAACCCTCAGGAGAGTATTTTGGAGAGTTTACCAAACCCTACTAAGGAGGAACTTCTACATGTGAGTTGGTGCTGCTCTTGCCGTAATATTTGAATATATTTTGATGGTGATTTTCAGGAGATGTTAAAATCACTCAATTTACCATCTCACTAACCTTTATTGGCCATAATAATAATATTTTGGACTTTGAAGTTGGTTTGCTGCCATACATTAGTGTTCGCGAGTCACTTGTTTCTTCAGATATTACCGTTTATTGAGGTATTATTTTAAGCAAAGCTTATTGTTTCCAGCATTGGATCTCGATTCAAGAATTACTCAGGCATTTTTGGTCGTCTTATCCAATCACCACATCATATCTTTATACCAAAGTAAGTTCTGATTCTTTTTTCATTAATAGGACAATCCTTCATTTGATACTTCACATTTTCATATTGAATGTGGATACGTATTATCCAATCACCACATCACATCTTCATCCATTTATTTCTATATTGAATAAGTAGTTCGAGTTCTAGTTCAGTACTTCACATTTTCATGAACTTCAAATGTTCAAGAATCTATTTTGTTATGACTAATTACTGCTCACTGTTGTGCAAAAAATTCACATATCGAATTTAAGATTCACATTGTTTACAAAAAGCCTTCTCTCAGCTTATGCATAGCCGGCTTGGGCTCAATGAAGGAAGGCTCGGATCCTTTAATAGATTTTGATGATATAATTCATGCTCCTTTAATAGGTTCATTCAACAAATTTCTTGATATTCTTGTTAGGAGAAAGTGCTTAATCTTTTTAACATTTTACAGTTCCTGGAGGTTTCTAGCATTAATTTTTGCTACCAAACATAAGTTAACTTTTGGGCATCAATTGTCCCAACTCTTAAGAAGGAAGAGTTGGCAAATAGGCTCAGCTATAATAGCATCGAGCTTTGGCCCTCCTTATATCTTGGTGTTCCCTTAATTGTAGCTCTGGAAAACTGAAAAGCCTCATTTTGGAGCTCAAGGGTGTTGGTTGAATATTTTGCAAGCTAAAGAAATGGGGAAATAAAAACCTTTTCTTCGGTGGGATACTTTGTTTGAGGCGCGAAGTTGGTTATTTTAGTCTATAGGTTATAATAGTCTGTATTTGGGGTGGGAAACTATTTTAGTCTGGGTTATAATAGTCTGTGTTTGTGGTGCAGACCATTTTAGTCTGATGTGGAAATAGTGAACAATGAAACAAAGAGGGAAAGAGAGAATGAGTAGGAAATAGTTAACACAGTAACAAAGAAGGATCTGAACTAGTAGTACTATATTTAATTGTAGTTTAACACTAGAATAAAGAGGGATTTGGAATAGTAATACTGTAGTTAGTTATAGGTTATAATAGTTGGAAACACCAATTATTATAATTGGAGCTCTAAGTATGGAGTGGATTATAATAGCCCTGGCCCAAACACCCTCTTAGATTTTGATACTGGAATGGTTGGTGCATGATTGGCAATGTTGGAATAAAGTTTGAAACTTGGGATGTAGAATCGCCATGAGAACTGATGGGTTGTCTTGCCTCATCATACGAGGGGTGTATTAAGATTGCAAGTACGCAATTAGACAAATGAATTGTCTACTCTTTCACTGTCATTAGAGATGCTTGCTGTGGATGTGATGGAAGCTCGTATTGAAGTTAAGAAGACTTGTTTGTAAGGGTTGTTGACAGTCATGGTTCTTTCTCTCGAGAAGAATCTTCCTATTAGATGTAAGCTTTGACGTCAATATCCAACTAGATTTGATTGTTCACTAATTGTCAAGTGAACAAGGAAACAGTGTAGGACCCGTTGCCTGTTCCAACAAATTAAAGAAGAGTTTTGCATAGGTAGGTAATGAATGGGGCAACTTAGGAAAGGACTCTTAAAAGCTAGAACTGTGATCTGAGAAGGAACTTGGTCCATTTAGGAGGTAGATATGTCAGAAAGCTACTGGCTGCTAGGATGCCCTATCGTTCTCACACGTCACAAGTTCAAGGTCCATGCAATAGAGAAGAGCCACATTTGATTGTTTGAAAAATGTTATTCTTCCCTTCTATCTTCTCTATTCTGGATGAGATTTGACCTGATGAAGTCAATGTGATGCACTTTTGAGTGTCAACTTATATTAAATAATTCATACTGGGCATATATTGCATTTTTGGTATGGATCGCCTGTACTCTTCTTACTTGTTGGTATGTTATTTGCTACGCAGGTGAGCAGATTGAAGGATGCCATGTCAAAAATATATCGACAGTTAGAGGTACAAGACTCTTCCCCACTTCCCCCAGTTTGATATTTTGAACAGAGCATGCAGTAGTGCGGCCTATATATATTATATATATGCCACAATCTGTTGTTGATAGCTTAATGTAGTTTACTTATGTGGATTGTTTTGTAAACATCTTTTTTCTTGCTCATGGTTTTTTTCCTACTTTGTCTTATATATATATGCATTATTGTAGTTTTATGATACCATTTGTATTGAAAACAGGAGATCAAGGAAACTGTGCTAGCAGATTTCCGTCACCAAGTATCTCTTTTGGTTCGTCCAATGCATCAGGTTTGTAGTGTGTTCTCTTTTGAAATTTACACTTGTTTTGAGGAGAAAATGGGGAGAAAAAAAACACCAGAATTATAAGAGTAACTGAAGAGTTGTTGCGATGATACCCTCAAACTTATAAAAACTAATGTATCTAAACCTGACCACAATGATTTGATGGTATTGTTCAATTGCAATAATTATGTGAGTTTAGGGGGATTGCTTCGTAATAACCCCTATAGTTTTTTCTTTATTTTCTTATCCATGGTAGTGAGCATGGTGGATGGAAAAATGACCATATATGTGTGTATAAATGCATGTTTGTAGGCTCTGGATGCTGCTTTTCAGCATCATGACGCTGACTTGCAGAAGAGATCAGTAAAGAGTGGAGAAAGGCCTAACGGATACACTTAGACAATATCAATATAGAACCTTCCTTTCAATTCCCTCACTGAGTTTATCTTCAGATGAAATTTTGCGGTTGACAGCCATCATCATGTGTTGGACAAGTTTTTATTTAGCATTCCTAATCTATTGCCTTTCAGTAGTAAATAATGGTATTTCTTCATTTTATATAATCCATAGTAATTATTTCTCCATATATAGAATAAACATTAGAATTGTATTATCATAGCCACTGACTTTTATATATATTATGGGAAGTTACAAAATATTTTATCTTCTAATCATGCCGTTTATTGTAATTGAAACTTTGTTTTAAGGGCC

mRNA sequence

ATGGTTCGGTTGGATTTAGATGATTTTCGAACCATATTAGATACAGCCGGTGTCGATGTTTGGACTTTCATCGATACAGCTATGGAGGTCGCTTCATTGGATTACGGTAATCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGCCGGAACTGTGAAACGGATCGCAACCATGACGGCCGTTCTAATGGCTGTGAAATCAAACAGAGCTCCGGTGAGGTGAAGGGAGCTTCCCCTTCGACGCTGCAGTTCGTTGTAGTGGAAGGGGATGACGATGGAGTAGACCCATATGCAGGATTGTTTGATGATGAACAGAAGAAGGTTTTGGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGAATTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTTAGAAAATGGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAAACAGCTACACTCTTAGCTGATGGTGTAAAGCTCCTCAAAATGGATATCATCAGGTTCCTGATTTTGCATACTCTCCAAATCCACACAATGGAGGTTCTGGGTCGGATAGAAATAACTCAGAACCGGAACCGAAGGGAAAATCCGTTCCAAGAAGAGATGCTCCGCCTAAACCAGCACAACCAGCTCCAATGTCGTCTTAAACTCCTTAAAATAGACAGAAAGAACAACAGAAAGAAGCAAATTTTGATTCCCACAAGCTTGTATCAGCTAGAAAAAGGTTTCAAGAGAATTATAAAGAAGCTGAAAATGCTAAAAGGCAAAGAACAATCCAAGTCATGGACATCCATGAGATCCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAGGCAGTGGTGGTGGTTCTCAAGGCAGACACTGGTGATATTTGGCAATGCAGTAAAGCAACATCTTCTAAATATCCATACGAGCACAATATAATCCTAACAAACCAAGAAAACATGAAATATATCCCACTGCTAAAGATTTCAAGAAATTTAAAGACAATAGTAGATGTAGACTTGGAAGATCCAAGGACAGTAGCAGAAGCACTTGTGCGGTCTAGACATGCGGTAGAAGGAAATGAGAAGCAGACAGCACTTGATAGGATCTCTAGGATGACAGCGATTGAGGATCTTCAAGCTTCTCATAGCCATCCTTTTGCTCCTCTTTGTATCAAGGATCCTCGAGATTATTTTGATGCTCAACAAGCAAATGCCATTAAGACATTGGATGATACACGAGCTGGAATGCAACAAACTAAATGCAGTTTGAGCACTACAGAAGCATATTACTCACTGAGGAAATCCATATCTGAGATCAAATCTTCTGGATTGAATCATCCCATAATTAAACCTGAAGTTGCTCTGATGCATTGGATCTCGATTCAAGAATTACTCAGGCATTTTTGGTCGTCTTATCCAATCACCACATCATATCTTTATACCAAAGTGAGCAGATTGAAGGATGCCATGTCAAAAATATATCGACAGTTAGAGGAGATCAAGGAAACTGTGCTAGCAGATTTCCGTCACCAAGTATCTCTTTTGGTTCGTCCAATGCATCAGGCTCTGGATGCTGCTTTTCAGCATCATGACGCTGACTTGCAGAAGAGATCAGTAAAGAGTGGAGAAAGGCCTAACGGATACACTTAGACAATATCAATATAGAACCTTCCTTTCAATTCCCTCACTGAGTTTATCTTCAGATGAAATTTTGCGGTTGACAGCCATCATCATGTGTTGGACAAGTTTTTATTTAGCATTCCTAATCTATTGCCTTTCAGTAGTAAATAATGGTATTTCTTCATTTTATATAATCCATAGTAATTATTTCTCCATATATAGAATAAACATTAGAATTGTATTATCATAGCCACTGACTTTTATATATATTATGGGAAGTTACAAAATATTTTATCTTCTAATCATGCCGTTTATTGTAATTGAAACTTTGTTTTAAGGGCC

Coding sequence (CDS)

ATGGTTCGGTTGGATTTAGATGATTTTCGAACCATATTAGATACAGCCGGTGTCGATGTTTGGACTTTCATCGATACAGCTATGGAGGTCGCTTCATTGGATTACGGTAATCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGCCGGAACTGTGAAACGGATCGCAACCATGACGGCCGTTCTAATGGCTGTGAAATCAAACAGAGCTCCGGTGAGGTGAAGGGAGCTTCCCCTTCGACGCTGCAGTTCGTTGTAGTGGAAGGGGATGACGATGGAGTAGACCCATATGCAGGATTGTTTGATGATGAACAGAAGAAGGTTTTGGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGAATTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTTAGAAAATGGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAAACAGCTACACTCTTAGCTGATGGTGTAAAGCTCCTCAAAATGGATATCATCAGGTTCCTGATTTTGCATACTCTCCAAATCCACACAATGGAGGTTCTGGGTCGGATAGAAATAACTCAGAACCGGAACCGAAGGGAAAATCCGTTCCAAGAAGAGATGCTCCGCCTAAACCAGCACAACCAGCTCCAATGTCGTCTTAAACTCCTTAAAATAGACAGAAAGAACAACAGAAAGAAGCAAATTTTGATTCCCACAAGCTTGTATCAGCTAGAAAAAGGTTTCAAGAGAATTATAAAGAAGCTGAAAATGCTAAAAGGCAAAGAACAATCCAAGTCATGGACATCCATGAGATCCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAGGCAGTGGTGGTGGTTCTCAAGGCAGACACTGGTGATATTTGGCAATGCAGTAAAGCAACATCTTCTAAATATCCATACGAGCACAATATAATCCTAACAAACCAAGAAAACATGAAATATATCCCACTGCTAAAGATTTCAAGAAATTTAAAGACAATAGTAGATGTAGACTTGGAAGATCCAAGGACAGTAGCAGAAGCACTTGTGCGGTCTAGACATGCGGTAGAAGGAAATGAGAAGCAGACAGCACTTGATAGGATCTCTAGGATGACAGCGATTGAGGATCTTCAAGCTTCTCATAGCCATCCTTTTGCTCCTCTTTGTATCAAGGATCCTCGAGATTATTTTGATGCTCAACAAGCAAATGCCATTAAGACATTGGATGATACACGAGCTGGAATGCAACAAACTAAATGCAGTTTGAGCACTACAGAAGCATATTACTCACTGAGGAAATCCATATCTGAGATCAAATCTTCTGGATTGAATCATCCCATAATTAAACCTGAAGTTGCTCTGATGCATTGGATCTCGATTCAAGAATTACTCAGGCATTTTTGGTCGTCTTATCCAATCACCACATCATATCTTTATACCAAAGTGAGCAGATTGAAGGATGCCATGTCAAAAATATATCGACAGTTAGAGGAGATCAAGGAAACTGTGCTAGCAGATTTCCGTCACCAAGTATCTCTTTTGGTTCGTCCAATGCATCAGGCTCTGGATGCTGCTTTTCAGCATCATGACGCTGACTTGCAGAAGAGATCAGTAAAGAGTGGAGAAAGGCCTAACGGATACACTTAG

Protein sequence

MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTATLLADGVKLLKMDIIRFLILHTLQIHTMEVLGRIEITQNRNRRENPFQEEMLRLNQHNQLQCRLKLLKIDRKNNRKKQILIPTSLYQLEKGFKRIIKKLKMLKGKEQSKSWTSMRSQSQRMPSSQRTKAVVVVLKADTGDIWQCSKATSSKYPYEHNIILTNQENMKYIPLLKISRNLKTIVDVDLEDPRTVAEALVRSRHAVEGNEKQTALDRISRMTAIEDLQASHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYYSLRKSISEIKSSGLNHPIIKPEVALMHWISIQELLRHFWSSYPITTSYLYTKVSRLKDAMSKIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKSGERPNGYT

Homology

[Close]

BLAST of Lsi01G020140 vs. ExPASy Swiss-Prot
Match: F4KFC7 (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.0e-61
Identity = 128/217 (58.99%), Postives = 156/217 (71.89%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  E-----------TDRNHDGR-SNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGL 123
           +             R ++GR     E +   G    A     +  V   DDD  DP+AGL
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPFAGL 120

Query: 124 FDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSN 183
           FDDEQK ++EIKE+LE P   E++LVELLQNL DMDITFQAL+ETDIGRHVNR+RKH SN
Sbjct: 121 FDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSN 180

Query: 184 DVRRLVKHLVRKWKEIVDEWVRLNQPGE-QTATLLAD 208
           +VRRL K LV+KWKE VDEWV+ NQPG+ +  +L+AD
Sbjct: 181 NVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIAD 216

[Close]

BLAST of Lsi01G020140 vs. ExPASy Swiss-Prot
Match: Q3ECP0 (General transcription and DNA repair factor IIH subunit TFB1-1 OS=Arabidopsis thaliana OX=3702 GN=TFB1-1 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.4e-54
Identity = 122/257 (47.47%), Postives = 160/257 (62.26%), Query Frame = 0


Query: 384 VDVDLEDPRTVAEALVRSRHAVEG------NEKQTALDRISRMTAIEDLQASHSHPFAPL 443
           +DV+ ED R VAEAL R +   +       +  Q  L+R+SR+  +EDLQA  + P APL
Sbjct: 340 IDVESEDTRIVAEALTRVKQVSKADGETTKDANQERLERMSRVAGMEDLQAPQNFPLAPL 399

Query: 444 CIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYYSLRKSISEIKSSGLNHPII 503
            IKDPRDYF++QQ N +      + G+++     +  EAY  L++SI EI+++GL+ P+I
Sbjct: 400 SIKDPRDYFESQQGNVLNVPRGAK-GLKR-----NVHEAYGLLKESILEIRATGLSDPLI 459

Query: 504 KPEVA--------------------------------------LMHWISIQELLRHFWSS 563
           KPEV+                                      L HW SIQELL+HFWSS
Sbjct: 460 KPEVSFEVFSSLTRTIATAKNINGKNPRESFLDRLPKSTKDEVLHHWTSIQELLKHFWSS 519

Query: 564 YPITTSYLYTKVSRLKDAMSKIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHD 597
           YPITT+YL+TKV +LKDAMS  Y +LE +KE+V +D RHQVSLLVRPM QALDAAF H++
Sbjct: 520 YPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLLVRPMQQALDAAFHHYE 579

[Close]

BLAST of Lsi01G020140 vs. ExPASy Swiss-Prot
Match: Q9M322 (General transcription and DNA repair factor IIH subunit TFB1-3 OS=Arabidopsis thaliana OX=3702 GN=TFB1-3 PE=2 SV=2)

HSP 1 Score: 193.0 bits (489), Expect = 9.9e-48
Identity = 120/302 (39.74%), Postives = 168/302 (55.63%), Query Frame = 0


Query: 336 LKADTGDIWQCSKATSSKYPYEHNIILTNQENMKYIPLLKISRNLKTI-----VDVDLED 395
           + AD GD +        +    ++II    + +K   L  ++R+   +     ++V  ED
Sbjct: 282 MDADEGDDYTHLMDHGIQRDGTNDIIEPQNDQLKRSLLQDLNRHAAVVLEGRCINVQSED 341

Query: 396 PRTVAEALVRSRHA------VEGNEKQTALDRISRMTAIEDLQASHSHPFAPLCIKDPRD 455
            R VAEAL R++        +  +  Q  L+R+SR T +EDLQA  + P APL IKDPRD
Sbjct: 342 TRIVAEALTRAKQVSKADGEITKDANQERLERMSRATEMEDLQAPQNFPLAPLSIKDPRD 401

Query: 456 YFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYYSLRKSISEIKSSGLNHPIIKPEVA-- 515
           YF++QQ N +      +A  +      +  EAY  L++SI  I+ +GL+ P+IKPEV+  
Sbjct: 402 YFESQQGNILSEPRGAKASKR------NVHEAYGLLKESILVIRMTGLSDPLIKPEVSFE 461

Query: 516 ------------------------------------LMHWISIQELLRHFWSSYPITTSY 575
                                               + HW SIQEL+RHFWSSYPITT+Y
Sbjct: 462 VFSSLTRTISTAKNILGKNPQESFLDRLPKSTKDEVIHHWTSIQELVRHFWSSYPITTTY 521

Query: 576 LYTKVSRLKDAMSKIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHDADLQKRS 589
           L TKV +LKDAMS  Y  L+ +K++V +D RHQVSLLVRPM QALDAAFQH+++DLQ+R+
Sbjct: 522 LSTKVGKLKDAMSNTYSLLDAMKQSVQSDLRHQVSLLVRPMQQALDAAFQHYESDLQRRT 577

[Close]

BLAST of Lsi01G020140 vs. ExPASy Swiss-Prot
Match: Q9FHK9 (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.6e-16
Identity = 69/215 (32.09%), Postives = 101/215 (46.98%), Query Frame = 0


Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC- 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++     +RC  C 
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCR--VNRCVGCD 66

Query: 66  ----------ETDRNHDGRSNGCEIKQSSGEVKGASP---------------STLQFVVV 125
                     E +R   G   G        EV G S                S   F   
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 EGDDDGVDPYAGLFDDEQKKVLEIKE-QLEIPHQPEDALVELLQNLADMDITFQALKETD 185
           E   D ++ ++ +     K+V  IKE  L    +P   L++ L++L  M +    LK T+
Sbjct: 127 EALSDEIEEFSVV----SKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTE 186

Query: 186 IGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWV 193
           IG+ VN LRKHSS+ +R+L K L+ +WKE+VD+WV
Sbjct: 187 IGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWV 215

[Close]

BLAST of Lsi01G020140 vs. ExPASy Swiss-Prot
Match: F4J4Y5 (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-13
Identity = 60/201 (29.85%), Postives = 98/201 (48.76%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  E-TDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVLEI 123
           +  + +  G     EI    G   G           EG++      A +  DE  ++ +I
Sbjct: 68  DHLELSIAGDEAAVEIVGVGG---GGDRGDSGVATGEGEE------ASVSVDEVMRIRDI 127

Query: 124 KEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVR 183
               +   + +  L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L K L  
Sbjct: 128 LSNKD--DEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTLFA 187

Query: 184 KWKEIVDEWVRLNQPGEQTAT 204
           +WK +VD+W  +N P E   T
Sbjct: 188 EWKRLVDQW--MNTPEEMAGT 193

[Close]

BLAST of Lsi01G020140 vs. ExPASy TrEMBL
Match: A0A5A7SIU9 (Putative mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00130 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 3.8e-111
Identity = 204/208 (98.08%), Postives = 205/208 (98.56%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVL 120
           RNC+TDRNHDGRSNGCEIKQ SGEVKGASPST QFVVVEGDDDG DPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 209
           VRKWKEIVDEWVRLNQPGEQTATLLADG
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 208

[Close]

BLAST of Lsi01G020140 vs. ExPASy TrEMBL
Match: A0A1S3B2G2 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo OX=3656 GN=LOC103485244 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 3.8e-111
Identity = 204/208 (98.08%), Postives = 205/208 (98.56%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVL 120
           RNC+TDRNHDGRSNGCEIKQ SGEVKGASPST QFVVVEGDDDG DPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 209
           VRKWKEIVDEWVRLNQPGEQTATLLADG
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 208

[Close]

BLAST of Lsi01G020140 vs. ExPASy TrEMBL
Match: A0A0A0KHV9 (TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G486670 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 1.0e-108
Identity = 201/208 (96.63%), Postives = 202/208 (97.12%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVL 120
           RNC+TDRNHDGRSNGCEIKQ SGEVK ASPST QFVVVEGDDDG DPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIP QPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 209
           VRKWKEIVDEWVRLNQPGEQTATLLADG
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 208

[Close]

BLAST of Lsi01G020140 vs. ExPASy TrEMBL
Match: A0A6J1ILB4 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita maxima OX=3661 GN=LOC111478070 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 8.3e-106
Identity = 196/208 (94.23%), Postives = 201/208 (96.63%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVL 120
           RNC+TDR +DGRSNGCEIKQS  E K ASPST QFVVVEGDD+GVDPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 209
           VRKWKEIVDEWVRLNQPGEQTATL+ADG
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADG 208

[Close]

BLAST of Lsi01G020140 vs. ExPASy TrEMBL
Match: A0A6J1GFA3 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita moschata OX=3662 GN=LOC111453638 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 1.4e-105
Identity = 195/208 (93.75%), Postives = 201/208 (96.63%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVL 120
           RNC+TDR +DGRSNGCEIKQS  E K ASPST QFVVVEGDD+GVDPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 209
           VRKWKEIVDEWVRLNQPGEQTATL+ADG
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADG 208

[Close]

BLAST of Lsi01G020140 vs. NCBI nr
Match: XP_008440997.1 (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cucumis melo] >KAA0025564.1 putative mediator of RNA polymerase II transcription subunit 26c [Cucumis melo var. makuwa] >TYK12438.1 putative mediator of RNA polymerase II transcription subunit 26c [Cucumis melo var. makuwa])

HSP 1 Score: 412.1 bits (1058), Expect = 7.9e-111
Identity = 204/208 (98.08%), Postives = 205/208 (98.56%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVL 120
           RNC+TDRNHDGRSNGCEIKQ SGEVKGASPST QFVVVEGDDDG DPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 209
           VRKWKEIVDEWVRLNQPGEQTATLLADG
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 208

[Close]

BLAST of Lsi01G020140 vs. NCBI nr
Match: XP_038882890.1 (probable mediator of RNA polymerase II transcription subunit 26c [Benincasa hispida])

HSP 1 Score: 405.6 bits (1041), Expect = 7.4e-109
Identity = 200/208 (96.15%), Postives = 203/208 (97.60%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVL 120
           RNC+TDRNHDGRSNGCEIKQS GEVKGASPST QFV V+GDDDGVDP+ GLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQSPGEVKGASPSTPQFVAVDGDDDGVDPHGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPED LVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDGLVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 209
           VRKWKEIVDEWVRLNQPGEQTATLLADG
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 208

[Close]

BLAST of Lsi01G020140 vs. NCBI nr
Match: KAE8647472.1 (hypothetical protein Csa_003517 [Cucumis sativus])

HSP 1 Score: 404.1 bits (1037), Expect = 2.2e-108
Identity = 201/208 (96.63%), Postives = 202/208 (97.12%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVL 120
           RNC+TDRNHDGRSNGCEIKQ SGEVK ASPST QFVVVEGDDDG DPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIP QPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 209
           VRKWKEIVDEWVRLNQPGEQTATLLADG
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 208

[Close]

BLAST of Lsi01G020140 vs. NCBI nr
Match: XP_004141981.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucumis sativus])

HSP 1 Score: 404.1 bits (1037), Expect = 2.2e-108
Identity = 201/208 (96.63%), Postives = 202/208 (97.12%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVL 120
           RNC+TDRNHDGRSNGCEIKQ SGEVK ASPST QFVVVEGDDDG DPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIP QPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 209
           VRKWKEIVDEWVRLNQPGEQTATLLADG
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 208

[Close]

BLAST of Lsi01G020140 vs. NCBI nr
Match: XP_022977926.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita maxima])

HSP 1 Score: 394.4 bits (1012), Expect = 1.7e-105
Identity = 196/208 (94.23%), Postives = 201/208 (96.63%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCETDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVL 120
           RNC+TDR +DGRSNGCEIKQS  E K ASPST QFVVVEGDD+GVDPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADG 209
           VRKWKEIVDEWVRLNQPGEQTATL+ADG
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADG 208

[Close]

BLAST of Lsi01G020140 vs. TAIR 10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 236.9 bits (603), Expect = 4.2e-62
Identity = 128/217 (58.99%), Postives = 156/217 (71.89%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  E-----------TDRNHDGR-SNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGL 123
           +             R ++GR     E +   G    A     +  V   DDD  DP+AGL
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPFAGL 120

Query: 124 FDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSN 183
           FDDEQK ++EIKE+LE P   E++LVELLQNL DMDITFQAL+ETDIGRHVNR+RKH SN
Sbjct: 121 FDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSN 180

Query: 184 DVRRLVKHLVRKWKEIVDEWVRLNQPGE-QTATLLAD 208
           +VRRL K LV+KWKE VDEWV+ NQPG+ +  +L+AD
Sbjct: 181 NVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIAD 216

[Close]

BLAST of Lsi01G020140 vs. TAIR 10
Match: AT1G55750.1 (BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) )

HSP 1 Score: 214.9 bits (546), Expect = 1.7e-55
Identity = 122/257 (47.47%), Postives = 160/257 (62.26%), Query Frame = 0


Query: 384 VDVDLEDPRTVAEALVRSRHAVEG------NEKQTALDRISRMTAIEDLQASHSHPFAPL 443
           +DV+ ED R VAEAL R +   +       +  Q  L+R+SR+  +EDLQA  + P APL
Sbjct: 340 IDVESEDTRIVAEALTRVKQVSKADGETTKDANQERLERMSRVAGMEDLQAPQNFPLAPL 399

Query: 444 CIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYYSLRKSISEIKSSGLNHPII 503
            IKDPRDYF++QQ N +      + G+++     +  EAY  L++SI EI+++GL+ P+I
Sbjct: 400 SIKDPRDYFESQQGNVLNVPRGAK-GLKR-----NVHEAYGLLKESILEIRATGLSDPLI 459

Query: 504 KPEVA--------------------------------------LMHWISIQELLRHFWSS 563
           KPEV+                                      L HW SIQELL+HFWSS
Sbjct: 460 KPEVSFEVFSSLTRTIATAKNINGKNPRESFLDRLPKSTKDEVLHHWTSIQELLKHFWSS 519

Query: 564 YPITTSYLYTKVSRLKDAMSKIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHD 597
           YPITT+YL+TKV +LKDAMS  Y +LE +KE+V +D RHQVSLLVRPM QALDAAF H++
Sbjct: 520 YPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLLVRPMQQALDAAFHHYE 579

[Close]

BLAST of Lsi01G020140 vs. TAIR 10
Match: AT3G61420.1 (BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) )

HSP 1 Score: 193.0 bits (489), Expect = 7.0e-49
Identity = 120/302 (39.74%), Postives = 168/302 (55.63%), Query Frame = 0


Query: 336 LKADTGDIWQCSKATSSKYPYEHNIILTNQENMKYIPLLKISRNLKTI-----VDVDLED 395
           + AD GD +        +    ++II    + +K   L  ++R+   +     ++V  ED
Sbjct: 282 MDADEGDDYTHLMDHGIQRDGTNDIIEPQNDQLKRSLLQDLNRHAAVVLEGRCINVQSED 341

Query: 396 PRTVAEALVRSRHA------VEGNEKQTALDRISRMTAIEDLQASHSHPFAPLCIKDPRD 455
            R VAEAL R++        +  +  Q  L+R+SR T +EDLQA  + P APL IKDPRD
Sbjct: 342 TRIVAEALTRAKQVSKADGEITKDANQERLERMSRATEMEDLQAPQNFPLAPLSIKDPRD 401

Query: 456 YFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYYSLRKSISEIKSSGLNHPIIKPEVA-- 515
           YF++QQ N +      +A  +      +  EAY  L++SI  I+ +GL+ P+IKPEV+  
Sbjct: 402 YFESQQGNILSEPRGAKASKR------NVHEAYGLLKESILVIRMTGLSDPLIKPEVSFE 461

Query: 516 ------------------------------------LMHWISIQELLRHFWSSYPITTSY 575
                                               + HW SIQEL+RHFWSSYPITT+Y
Sbjct: 462 VFSSLTRTISTAKNILGKNPQESFLDRLPKSTKDEVIHHWTSIQELVRHFWSSYPITTTY 521

Query: 576 LYTKVSRLKDAMSKIYRQLEEIKETVLADFRHQVSLLVRPMHQALDAAFQHHDADLQKRS 589
           L TKV +LKDAMS  Y  L+ +K++V +D RHQVSLLVRPM QALDAAFQH+++DLQ+R+
Sbjct: 522 LSTKVGKLKDAMSNTYSLLDAMKQSVQSDLRHQVSLLVRPMQQALDAAFQHYESDLQRRT 577

[Close]

BLAST of Lsi01G020140 vs. TAIR 10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 87.0 bits (214), Expect = 5.4e-17
Identity = 69/215 (32.09%), Postives = 101/215 (46.98%), Query Frame = 0


Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC- 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++     +RC  C 
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCR--VNRCVGCD 66

Query: 66  ----------ETDRNHDGRSNGCEIKQSSGEVKGASP---------------STLQFVVV 125
                     E +R   G   G        EV G S                S   F   
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 EGDDDGVDPYAGLFDDEQKKVLEIKE-QLEIPHQPEDALVELLQNLADMDITFQALKETD 185
           E   D ++ ++ +     K+V  IKE  L    +P   L++ L++L  M +    LK T+
Sbjct: 127 EALSDEIEEFSVV----SKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTE 186

Query: 186 IGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWV 193
           IG+ VN LRKHSS+ +R+L K L+ +WKE+VD+WV
Sbjct: 187 IGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWV 215

[Close]

BLAST of Lsi01G020140 vs. TAIR 10
Match: AT3G10820.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-14
Identity = 60/201 (29.85%), Postives = 98/201 (48.76%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  E-TDRNHDGRSNGCEIKQSSGEVKGASPSTLQFVVVEGDDDGVDPYAGLFDDEQKKVLEI 123
           +  + +  G     EI    G   G           EG++      A +  DE  ++ +I
Sbjct: 68  DHLELSIAGDEAAVEIVGVGG---GGDRGDSGVATGEGEE------ASVSVDEVMRIRDI 127

Query: 124 KEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVR 183
               +   + +  L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L K L  
Sbjct: 128 LSNKD--DEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTLFA 187

Query: 184 KWKEIVDEWVRLNQPGEQTAT 204
           +WK +VD+W  +N P E   T
Sbjct: 188 EWKRLVDQW--MNTPEEMAGT 193

The following BLAST results are available for this feature:

BLAST of Lsi01G020140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KFC7	6.0e-61	58.99	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]
Q3ECP0	2.4e-54	47.47	General transcription and DNA repair factor IIH subunit TFB1-1 OS=Arabidopsis th...	[more]
Q9M322	9.9e-48	39.74	General transcription and DNA repair factor IIH subunit TFB1-3 OS=Arabidopsis th...	[more]
Q9FHK9	7.6e-16	32.09	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
F4J4Y5	1.6e-13	29.85	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]

BLAST of Lsi01G020140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SIU9	3.8e-111	98.08	Putative mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo...	[more]
A0A1S3B2G2	3.8e-111	98.08	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo...	[more]
A0A0A0KHV9	1.0e-108	96.63	TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4...	[more]
A0A6J1ILB4	8.3e-106	94.23	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita ma...	[more]
A0A6J1GFA3	1.4e-105	93.75	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita mo...	[more]

BLAST of Lsi01G020140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440997.1	7.9e-111	98.08	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cuc...	[more]
XP_038882890.1	7.4e-109	96.15	probable mediator of RNA polymerase II transcription subunit 26c [Benincasa hisp...	[more]
KAE8647472.1	2.2e-108	96.63	hypothetical protein Csa_003517 [Cucumis sativus]	[more]
XP_004141981.1	2.2e-108	96.63	probable mediator of RNA polymerase II transcription subunit 26c [Cucumis sativu...	[more]
XP_022977926.1	1.7e-105	94.23	probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita maxi...	[more]

BLAST of Lsi01G020140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09850.1	4.2e-62	58.99	Transcription elongation factor (TFIIS) family protein	[more]
AT1G55750.1	1.7e-55	47.47	BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS...	[more]
AT3G61420.1	7.0e-49	39.74	BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS...	[more]
AT5G05140.1	5.4e-17	32.09	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.1	1.1e-14	29.85	Transcription elongation factor (TFIIS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 531..551
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 116..189 e-value: 6.62569E-17 score: 73.4966
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 119..190 e-value: 1.7E-9 score: 47.6
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 113..202 e-value: 4.1E-23 score: 82.9
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 117..198
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 139..188 e-value: 1.5E-12 score: 47.3
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 114..191 score: 25.527599
IPR044790	Mediator of RNA polymerase II transcription subunit 26c-like	PANTHER	PTHR47210	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED	coord: 5..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G020140.1	Lsi01G020140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005634	nucleus