Lsi01G019960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G019960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-CH-type domain-containing protein
Locationchr01: 26729036 .. 26731971 (+)
RNA-Seq ExpressionLsi01G019960
SyntenyLsi01G019960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAAGTTAAATGGGAGGAGATTCCCAAAAAGTATTATACTCGCAAAGGATGCTGAAGTTTTAGCAATGCCTTTCAGCCACCTGAATGCTCCTTCCATATTCTACTTCTTAATGGTTGAAATTCTCAAAACATATTTGCATGAGTTTGCTTTGGTGGTTTTTGATGACATTTTCTTTTCGTTGCAATTTACTGGAGTACAAGAAACACCTGAAGCTAGTTCTGTAGACTATGCAAGACTGGTAGGTCAATGGAAATAATATAAACATGTTGTTTTTTTTTTTTTTTTTTTTTCCCAAACAAGCTCTAAATTTTCTTGCCCACCACATATCGAGGGAGAGTGTTAAAGGTGATCTAAATAAGACCATAACCAACGGAAGCATAGCTCAACTAGTAAATTCCCACCTCAAATGTATTATCGAACTAAAAAAAAAAATGAAAAAGAAAAGAAAAACTAAGCTATATTGATAAGTAACCCTCGACGCGTTGGATCTAGCAACCATGTTGACAAACAAGACCTTTAGAACTCAACCGCAAAAGACCCCAAATCAAGATGATCTCAGCCCCTAAGAATGGCTAGATGACGGATTACTTAGACGATCATCAAAACCACGAATCGGACAAAGCTTGCGGCTCCCATCGACTCTTGATCTTCGAATCACTCCACAAGCAAGATCGATCAAGTCCAGCTTGAATGATTCTGAACATGCAATCTAAACACCATAGAATTGTAAAGGAAACTTAGCTCAAGGCTAAAAGAAAGCTCAAAGGCTCTTTTTACTAAATTTTTCCAAAATCTCCCTTTTTTGACAAATTACATTACATTATATAAGCCTCAAAATATAACCCTAGACATTCTATGAGGCATTCAAAGAGTAATTGATGACCATTACAACTCATGATCTAAATGTAACATAAAACACATAAAATGACTTAAAAACTGAAAATTACATTTAATTATTACCATAAATCCGAAAATATTCATTTTTAATCAACAACCCATCAATTTGTAACCATCTTTGAGTTGTGAAGCCCCACTTGAAGTCCTTGTTCCATAAATGAAGCTTGATTCTTCATAAATTTCACTTGATTTCTCATAATTGCAAGTTCTCTTGAAGGTGAATTTGAACAACATATAGTGTGCATTCTTGGCGTCGTTCTTAAAGTTCATATGCCACGATTTAGGTTCCTCCGTTCATATCATATATGTTTCTTGCTATTATCACCTATGAGTCTTCACAAGATTTAGAGTGTAGGGCTTAACTAGGTATTATCGTGGAAGGTTATGGAAATCTAACTTGGCCTCTCATTGAGCAAGTAGAAAGATAATTTTGCTGGATTGCTTTATCTGAAGAAGCTTTCCCGGGGATAGTGGCTGTTCATGTTTATATAGAAACGGTAACAGGGAAGGGGCAGGACCTATTATTGTTAGGTAGTGCTAGTGGATAGTGGATACATGCCCCCCCCCTTAGGATCTAGGCGCATGCCTGTATTCCTAGTTAGGTAGGAGCTGGGAGAGTAGGAGAGGCTGTGACTCACTGCTTTTGGATAAGTAAAAGGTAAATTTTATTATTCTTGTACAACTGTTTTAGAGGACGATTTATCAATGTTCCCATTTCCCATTTTTTATTTCTTGTTTTTGACTAATATATGCTATTGGTAACTGTTCCTCATCTTTTGTTTTTCATTTTGAAGAAACATTTCAAAATTTATATATAAATTTTTTAATGGGAAAAACCCAAAACCCAAACCGAATAAAATGGGATAAAACAGCAGCCTTCAAGAGAAAAGTTCCAAAAGAAAACCAAAGAACATCCACGAGCTCATTTAACAAAACAGGAAAAAAACGTAAAAAGGAACAAAAGAACTTCTCTCAACAACTAAAATCCTACCCCTAACCAAACCCAAACCAAGCAAATAACTAAAAGAATGACAGCAAAACTTAAAAACTTCAAGCACTGATGGAATTGTAAAATCTTGCAACAGAAAACAGAATTTAGATGGCGTACCAAAACATGCTCATAGCCTCCAACCTTGTTTTAGGCGGTCAAATTCTTGACTTTTATTTATTTATTTTTTTAGACAACTTCATTGATCATATTAGATTACGAAAGGGGAGAGCTCCAATTCAAGGGAGCTACAAAAAACTTCTCCAATTGGATATTATGAGGTAAAGCGATAGTATAGAAGGATGGGAGGAGATTTAGACCAAGAAGCCATTAATAAAAAGAAAATGAGCAAATGATGAATCCCTATCTTAAAAAGATCCATCGATTTCTTCAATGTTGATATTGTATGCGTGTGTACAACTGTACATAGGTTCACATTGGAAGGGTTGTGTACTCATTGGAAGGGCCCCATCGTTTTATGGCTAGATATTGAGATGCATGTGTTATTTATATATTAACATTTTTTTTCACATTGGCATTAATCATTTTACGTATGAAAATTTGGGAAACTTCAATGCTCAGATTCCAAACTTCTATTCTTTCCATATCTGCAGTTTGTGCTTACCAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCATCAAGGACACACGCTGCTCATACGACGTAACTGGGTACATTCTGTACATTCTATTTGGTTGTTTTTCCGTTCTCCACTTCAAGGCGATCTCACAAAATATACAAGTGTTTGATACTTCTTTAAGGTACTGAAATCATGATATATATCCTGTAGGGTTTTGATTTTATGTTGTATTTTAGGTTGTATGAGTGTAAATTTGAGATTGGGAAAGGTATATAAGTATCCAGACAAGATACAAGATACCCTTTAGCTGTATTTCATTGACACCAGAGCCGAGTATTTTTTATTATTTGTTAAAAGGATCTTCAATTCTTTTAAAATTTTAGTAAATTGTTCTCATTTTTG

mRNA sequence

ATGTTCAAGTTAAATGGGAGGAGATTCCCAAAAAGTATTATACTCGCAAAGGATGCTGAAGTTTTAGCAATGCCTTTCAGCCACCTGAATGCTCCTTCCATATTCTACTTCTTAATGGTTGAAATTCTCAAAACATATTTGCATGAGTTTGCTTTGGTGGTTTTTGATGACATTTTCTTTTCGTTGCAATTTACTGGAGTACAAGAAACACCTGAAGCTAGTTCTGTAGACTATGCAAGACTGTTTGTGCTTACCAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCATCAAGGACACACGCTGCTCATACGACGTAACTGGGTACATTCTGTACATTCTATTTGGTTGTTTTTCCGTTCTCCACTTCAAGGCGATCTCACAAAATATACAAGTGTTTGATACTTCTTTAAGGTACTGAAATCATGATATATATCCTGTAGGGTTTTGATTTTATGTTGTATTTTAGGTTGTATGAGTGTAAATTTGAGATTGGGAAAGGTATATAAGTATCCAGACAAGATACAAGATACCCTTTAGCTGTATTTCATTGACACCAGAGCCGAGTATTTTTTATTATTTGTTAAAAGGATCTTCAATTCTTTTAAAATTTTAGTAAATTGTTCTCATTTTTG

Coding sequence (CDS)

ATGTTCAAGTTAAATGGGAGGAGATTCCCAAAAAGTATTATACTCGCAAAGGATGCTGAAGTTTTAGCAATGCCTTTCAGCCACCTGAATGCTCCTTCCATATTCTACTTCTTAATGGTTGAAATTCTCAAAACATATTTGCATGAGTTTGCTTTGGTGGTTTTTGATGACATTTTCTTTTCGTTGCAATTTACTGGAGTACAAGAAACACCTGAAGCTAGTTCTGTAGACTATGCAAGACTGTTTGTGCTTACCAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCATCAAGGACACACGCTGCTCATACGACGTAA

Protein sequence

MFKLNGRRFPKSIILAKDAEVLAMPFSHLNAPSIFYFLMVEILKTYLHEFALVVFDDIFFSLQFTGVQETPEASSVDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
Homology
[Close]
BLAST of Lsi01G019960 vs. ExPASy TrEMBL
Match: A0A1S3B510 (uncharacterized protein LOC103486085 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486085 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.3e-14
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
Sbjct: 324 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 367

[Close]
BLAST of Lsi01G019960 vs. ExPASy TrEMBL
Match: A0A1S3E9Y4 (uncharacterized protein LOC101504710 OS=Cicer arietinum OX=3827 GN=LOC101504710 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Sbjct: 324 VIFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 367

[Close]
BLAST of Lsi01G019960 vs. ExPASy TrEMBL
Match: A0A6J1EKV8 (uncharacterized protein LOC111435487 OS=Cucurbita moschata OX=3662 GN=LOC111435487 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Sbjct: 325 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 368

[Close]
BLAST of Lsi01G019960 vs. ExPASy TrEMBL
Match: A0A2Z6M5J3 (RING-CH-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_70550 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Sbjct: 314 VIFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 357

[Close]
BLAST of Lsi01G019960 vs. ExPASy TrEMBL
Match: A0A6J1HRV4 (uncharacterized protein LOC111467221 OS=Cucurbita maxima OX=3661 GN=LOC111467221 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Sbjct: 326 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 369

[Close]
BLAST of Lsi01G019960 vs. NCBI nr
Match: XP_011653898.1 (uncharacterized protein LOC101218157 [Cucumis sativus] >KAE8649727.1 hypothetical protein Csa_011959 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
Sbjct: 324 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 367

[Close]
BLAST of Lsi01G019960 vs. NCBI nr
Match: XP_038881492.1 (uncharacterized protein LOC120073014 isoform X1 [Benincasa hispida] >XP_038881493.1 uncharacterized protein LOC120073014 isoform X1 [Benincasa hispida])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
Sbjct: 319 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 362

[Close]
BLAST of Lsi01G019960 vs. NCBI nr
Match: XP_008442137.1 (PREDICTED: uncharacterized protein LOC103486085 isoform X1 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
Sbjct: 324 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 367

[Close]
BLAST of Lsi01G019960 vs. NCBI nr
Match: GAU25403.1 (hypothetical protein TSUD_70550 [Trifolium subterraneum])

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-13
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Sbjct: 314 VIFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 357

[Close]
BLAST of Lsi01G019960 vs. NCBI nr
Match: XP_022928641.1 (uncharacterized protein LOC111435487 [Cucurbita moschata] >XP_022928642.1 uncharacterized protein LOC111435487 [Cucurbita moschata])

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-13
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Sbjct: 325 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 368

[Close]
BLAST of Lsi01G019960 vs. TAIR 10
Match: AT5G08750.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R  VLTRI+YGPARYWAILFVFWFLVFGIWASR+HA+H++
Sbjct: 319 VIFFRFVVLTRIRYGPARYWAILFVFWFLVFGIWASRSHASHSS 362

[Close]
BLAST of Lsi01G019960 vs. TAIR 10
Match: AT5G08750.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R  VLTRI+YGPARYWAILFVFWFLVFGIWASR+HA+H++
Sbjct: 319 VIFFRFVVLTRIRYGPARYWAILFVFWFLVFGIWASRSHASHSS 362

[Close]
BLAST of Lsi01G019960 vs. TAIR 10
Match: AT5G08750.3 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R  VLTRI+YGPARYWAILFVFWFLVFGIWASR+HA+H++
Sbjct: 326 VIFFRFVVLTRIRYGPARYWAILFVFWFLVFGIWASRSHASHSS 369

[Close]
BLAST of Lsi01G019960 vs. TAIR 10
Match: AT5G63780.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R  VLTRI+YGPARYWAILF+FWFLVFGIWASR++A+H +
Sbjct: 323 VIFFRFVVLTRIRYGPARYWAILFIFWFLVFGIWASRSNASHNS 366

The following BLAST results are available for this feature:
BLAST of Lsi01G019960 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G019960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B5107.3e-1490.91uncharacterized protein LOC103486085 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3E9Y41.6e-1388.64uncharacterized protein LOC101504710 OS=Cicer arietinum OX=3827 GN=LOC101504710 ... [more]
A0A6J1EKV81.6e-1388.64uncharacterized protein LOC111435487 OS=Cucurbita moschata OX=3662 GN=LOC1114354... [more]
A0A2Z6M5J31.6e-1388.64RING-CH-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD... [more]
A0A6J1HRV41.6e-1388.64uncharacterized protein LOC111467221 OS=Cucurbita maxima OX=3661 GN=LOC111467221... [more]
BLAST of Lsi01G019960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653898.11.5e-1390.91uncharacterized protein LOC101218157 [Cucumis sativus] >KAE8649727.1 hypothetica... [more]
XP_038881492.11.5e-1390.91uncharacterized protein LOC120073014 isoform X1 [Benincasa hispida] >XP_03888149... [more]
XP_008442137.11.5e-1390.91PREDICTED: uncharacterized protein LOC103486085 isoform X1 [Cucumis melo][more]
GAU25403.13.4e-1388.64hypothetical protein TSUD_70550 [Trifolium subterraneum][more]
XP_022928641.13.4e-1388.64uncharacterized protein LOC111435487 [Cucurbita moschata] >XP_022928642.1 unchar... [more]
BLAST of Lsi01G019960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G08750.11.1e-1477.27RING/FYVE/PHD zinc finger superfamily protein [more]
AT5G08750.21.1e-1477.27RING/FYVE/PHD zinc finger superfamily protein [more]
AT5G08750.31.1e-1477.27RING/FYVE/PHD zinc finger superfamily protein [more]
AT5G63780.11.2e-1372.73RING/FYVE/PHD zinc finger superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 3..70
e-value: 1.7E-5
score: 26.7
NoneNo IPR availablePANTHERPTHR46214:SF14BNAA06G22890D PROTEINcoord: 76..114
NoneNo IPR availablePANTHERPTHR46214ZINC FINGER, RING-CH-TYPEcoord: 76..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G019960.1Lsi01G019960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008270 zinc ion binding