Lsi01G019620 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTATGAGCCAAATTAGATTGTTTAGAAGAAGCATTATTGTCAATAGCAAAGATCTAATACAACTGACATCTGTGCGAACATTCGCTGCTGGAGGCAAATCAAAGAAGGGGTCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGAAATTCTAAGTAAAGAGGTCAAGTCTACTACTGTTGTTTGTGCCAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCCCCCCTAAGCGAATTACGAAGGAAGAATACCAAAACCCTTCCCTACGCAGATCTCAGACGCTTTGCTAAATTAGATAATCGAGCAAAGATCAAGGAAAACAATTCTATGAAGGCCAAGAATTGA ATGAGTATGAGCCAAATTAGATTGTTTAGAAGAAGCATTATTGTCAATAGCAAAGATCTAATACAACTGACATCTGTGCGAACATTCGCTGCTGGAGGCAAATCAAAGAAGGGGTCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGAAATTCTAAGTAAAGAGGTCAAGTCTACTACTGTTGTTTGTGCCAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCCCCCCTAAGCGAATTACGAAGGAAGAATACCAAAACCCTTCCCTACGCAGATCTCAGACGCTTTGCTAAATTAGATAATCGAGCAAAGATCAAGGAAAACAATTCTATGAAGGCCAAGAATTGA ATGAGTATGAGCCAAATTAGATTGTTTAGAAGAAGCATTATTGTCAATAGCAAAGATCTAATACAACTGACATCTGTGCGAACATTCGCTGCTGGAGGCAAATCAAAGAAGGGGTCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGAAATTCTAAGTAAAGAGGTCAAGTCTACTACTGTTGTTTGTGCCAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCCCCCCTAAGCGAATTACGAAGGAAGAATACCAAAACCCTTCCCTACGCAGATCTCAGACGCTTTGCTAAATTAGATAATCGAGCAAAGATCAAGGAAAACAATTCTATGAAGGCCAAGAATTGA MSMSQIRLFRRSIIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKEILSKEVKSTTVVCANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNTKTLPYADLRRFAKLDNRAKIKENNSMKAKN Homology
BLAST of Lsi01G019620 vs. ExPASy Swiss-Prot
Match: Q9CPW3 (39S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 9.7e-04 Identity = 33/96 (34.38%), Postives = 50/96 (52.08%), Query Frame = 0
BLAST of Lsi01G019620 vs. ExPASy TrEMBL
Match: A0A5D3CXE8 (39S ribosomal protein L54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00130 PE=4 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 1.6e-54 Identity = 116/133 (87.22%), Postives = 124/133 (93.23%), Query Frame = 0
BLAST of Lsi01G019620 vs. ExPASy TrEMBL
Match: A0A1S3B544 (54S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 1.6e-54 Identity = 116/133 (87.22%), Postives = 124/133 (93.23%), Query Frame = 0
BLAST of Lsi01G019620 vs. ExPASy TrEMBL
Match: A0A1S4DUD4 (39S ribosomal protein L54, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 1.6e-54 Identity = 116/133 (87.22%), Postives = 124/133 (93.23%), Query Frame = 0
BLAST of Lsi01G019620 vs. ExPASy TrEMBL
Match: A0A0A0KYS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 9.0e-53 Identity = 113/131 (86.26%), Postives = 124/131 (94.66%), Query Frame = 0
BLAST of Lsi01G019620 vs. ExPASy TrEMBL
Match: A0A6J1JQ61 (54S ribosomal protein L37, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111486735 PE=4 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 1.9e-47 Identity = 108/134 (80.60%), Postives = 119/134 (88.81%), Query Frame = 0
BLAST of Lsi01G019620 vs. NCBI nr
Match: XP_038883607.1 (54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_038883608.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida]) HSP 1 Score: 223.4 bits (568), Expect = 1.2e-54 Identity = 121/134 (90.30%), Postives = 123/134 (91.79%), Query Frame = 0
BLAST of Lsi01G019620 vs. NCBI nr
Match: XP_038883606.1 (39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida]) HSP 1 Score: 223.4 bits (568), Expect = 1.2e-54 Identity = 121/134 (90.30%), Postives = 123/134 (91.79%), Query Frame = 0
BLAST of Lsi01G019620 vs. NCBI nr
Match: XP_008442187.1 (PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]) HSP 1 Score: 221.9 bits (564), Expect = 3.4e-54 Identity = 116/133 (87.22%), Postives = 124/133 (93.23%), Query Frame = 0
BLAST of Lsi01G019620 vs. NCBI nr
Match: XP_016899597.1 (PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo] >KAA0041217.1 39S ribosomal protein L54 [Cucumis melo var. makuwa] >TYK16020.1 39S ribosomal protein L54 [Cucumis melo var. makuwa]) HSP 1 Score: 221.9 bits (564), Expect = 3.4e-54 Identity = 116/133 (87.22%), Postives = 124/133 (93.23%), Query Frame = 0
BLAST of Lsi01G019620 vs. NCBI nr
Match: KAE8649745.1 (hypothetical protein Csa_012025 [Cucumis sativus]) HSP 1 Score: 216.9 bits (551), Expect = 1.1e-52 Identity = 114/132 (86.36%), Postives = 125/132 (94.70%), Query Frame = 0
BLAST of Lsi01G019620 vs. TAIR 10
Match: AT3G01740.1 (Mitochondrial ribosomal protein L37 ) HSP 1 Score: 155.6 bits (392), Expect = 2.8e-38 Identity = 87/133 (65.41%), Postives = 104/133 (78.20%), Query Frame = 0
BLAST of Lsi01G019620 vs. TAIR 10
Match: AT5G14290.1 (Mitochondrial ribosomal protein L37 ) HSP 1 Score: 136.7 bits (343), Expect = 1.3e-32 Identity = 78/133 (58.65%), Postives = 99/133 (74.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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