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Lsi01G019380 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAAAAAAAAAAGTAAAAAGCCAAAGAGAAATTAAATAGAGAGAGAGAAACCATTATAATGGCGGTCCCGCAGCGGTGGTGAAAGCAATTGCACAATTCCAACGATTCATCGATAAACAATCATTGATGTACAACTTTTTGTTCGAGTTCCAAATCCGAGGAGCTATAGGCTTAGCCCAGTTCCGGTCCTTGTGGGATTGAGGTTGTTTTTTCTTTTAATCCCTTTTTCAATTCTGTTTCTGTTTTTGTTTTCAACGTTCGTATCGATTTTTCCACTTTTGAGCCACCCCCAGAATTTATTATTTGAATTCTTGGTCTGTTTCTGCAATTGGGTTCCGAATTCTCATCTGGGGATATGGGTTCTTTGTTTTTTTTGTAAGATTTTCTTCTGTTTTCTTTTTGGTTTTTGTGGGGTTCTGTTTTTCTTTCTGGAGACTTGGAAATGAGGGTCTTGCTATGTTTCGTTCCTTAAGTTTCGTGCAAATTTTGTTTCGTTGTTGAATATTGATTTTCTAATAGGAGAAATGGGTTATCAATTTGTAATCTGTAAAAGGGGAGGAACAGGTTTTTGTATTTGTGCTGCCTGGTCTGGTTTCTTTTCGATTTCAAGCCATTTTTTAAAAGACTTTTCGGTGGATGAATTTAAATTTAATCACATGGCTTTTGGAATTTGACTGTAATAGGGTTGTTTTAATGGCTTCTGAGCCTCTAAAATAATGCCTGTTTGTTTATTATGTTGGTCTGGATGGATTCAAATGAGCCAATTATTTCATTAGGTGATTTATCTCCACAATTTTAAGAACGCGAAATGCAACTTGTTGTAAGACTATGTTATGTTAGTTGTCCTTATCTATAGAATATAATGCTGTCTTATGTCATAGTATGGAGCGAGCTTTTTGTGTTATTTTGGATTTTACGATTGCTTTGGGTTTTTGGAAGGAATCTAGATTGCTTTCTATTTTTCTTATCAAGGTCTACAAATTAAGAGTTCATCAAACTTAATAAGTTTCAAGTTGATCTTTCAGTATTTTGAAGCTCTTTTCCCAATGAATGCCTGGATGTGGATGTTTATGTAGATTTGTTAACCTAGGCTTGTTAAGTTTGGGGTTGGAAGTCTGAGTTTTTATGCTTGGACTATAAAAAAGAATGGGTTGTTAAATCTTGAGGATTGTGTACTTTGTGTTTGGTTTAAGATTTATAATTTATAAACTTCATGTGTAGTATTAGCATAAAAGGTGGGTTTTTGACCTTGAGTTTGTGTACTTTGTAGGATTAGCAAACTTATTGCTTGGAATAAAAAATTCCATTTACCAAACATAGGCCTGACTTCTTTTTAACTCCAAATTATATAAATCTAACCAGGAGCTAGTCACCACATATTGGTTAGGAAAGAATCTAGCAAATGGTCAGCAAGCTTTATGAGATAGAGTTGGACTTCAGGTTATGTAAGTTCCTAACCTTTGGCATATATGTTACCGTTCTCGAGTTCAGATTTCAAGAAAATGAGGGTGTTGCTAAGTCTTGTATGTTATTAAGCATTGTTGATCATATTTAGTTTTTATTATCAGCGGACTTTCATTCAAATTATATCAACAAATCTCCAAACATGAAATGTTTCATTTAATATGGTTATTGACTTGCCCTTTTCTTTTCATTTCTTTTCTTTTCTTTTTTTTTTGGGTCTGGTTTAACAGGATTGAACTCATGGATGAGTGATGCTTAGCATTTGGTGAAGAGTTTCCATTAATACCTTAAAGAAATATATTAAAATTTAATTAAGCCATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAAGCCCTCTTGGTTTGAGTGGGAAAATCGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGGTATGTACTTTATACCGTGTTTTTTCTCGTGTACTTCTCATTGTAATTTAAGCTATGCTTGGGATTGGAGTGTTTTTGGCATGGAAACATGTGGGTACACTTCTCGCTCAAATTCATTATGTTTGGGAGTAACATAAAAATGCTTTCGGAAAAAGTCAAAAAGCACCTTGAAAGGCTGTTTGAGAAAGCACTTTCTAGTGCTTGTAAAGTAGTATTTTCCTAACTGCACTTGTTGTCAATTGCCTGTGTAAACATGGAGAAGTGATTTTGCAAAAATTACCTTCATTTGTAAAGCATCTTCCATATTGTGCTTTAGATTCATTTCAATGATTGGGTCTAATCGATGAAAGCTGCTGTTAATTTCTTTAAGGTTGAATGGTGTGTGTTAAATATTATTAGCCTAAGAAATTATCATAAGTTGCTTATCTCATTCTTTTGCAGAATTTTATAGAATGTTTCCATAGGAACATGAGGTCCATGCATACTGGAATTGGTGTTTTCACCTTCCTTTGA AAAAAAAAAAAAAAAGTAAAAAGCCAAAGAGAAATTAAATAGAGAGAGAGAAACCATTATAATGGCGGTCCCGCAGCGGTGGTGAAAGCAATTGCACAATTCCAACGATTCATCGATAAACAATCATTGATGTACAACTTTTTGTTCGAGTTCCAAATCCGAGGAGCTATAGGCTTAGCCCAGTTCCGGTCCTTGTGGGATTGAGGAGCTAGTCACCACATATTGGTTAGGAAAGAATCTAGCAAATGGTCAGCAAGCTTTATGAGATAGAGTTGGACTTCAGGTTATGATTGAACTCATGGATGAGTGATGCTTAGCATTTGGTGAAGAGTTTCCATTAATACCTTAAAGAAATATATTAAAATTTAATTAAGCCATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAAGCCCTCTTGGTTTGAGTGGGAAAATCGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGAATTTTATAGAATGTTTCCATAGGAACATGAGGTCCATGCATACTGGAATTGGTGTTTTCACCTTCCTTTGA ATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAAGCCCTCTTGGTTTGAGTGGGAAAATCGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGAATTTTATAGAATGTTTCCATAGGAACATGAGGTCCATGCATACTGGAATTGGTGTTTTCACCTTCCTTTGA MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQNFIECFHRNMRSMHTGIGVFTFL Homology
BLAST of Lsi01G019380 vs. ExPASy Swiss-Prot
Match: P93748 (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana OX=3702 GN=SINAT1 PE=1 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 6.2e-13 Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 0
BLAST of Lsi01G019380 vs. ExPASy Swiss-Prot
Match: Q9M2P4 (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 8.2e-13 Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 0
BLAST of Lsi01G019380 vs. ExPASy TrEMBL
Match: A0A6J1ESE8 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435553 PE=3 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29 Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0
BLAST of Lsi01G019380 vs. ExPASy TrEMBL
Match: A0A6J1HT85 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111467239 PE=3 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29 Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0
BLAST of Lsi01G019380 vs. ExPASy TrEMBL
Match: A0A6J1HRY9 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111467239 PE=3 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29 Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0
BLAST of Lsi01G019380 vs. ExPASy TrEMBL
Match: A0A6J1ESF1 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435553 PE=3 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29 Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0
BLAST of Lsi01G019380 vs. ExPASy TrEMBL
Match: A0A6J1EBG4 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111432512 PE=3 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26 Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0
BLAST of Lsi01G019380 vs. NCBI nr
Match: XP_038881778.1 (E3 ubiquitin-protein ligase SINAT2-like [Benincasa hispida] >XP_038881779.1 E3 ubiquitin-protein ligase SINAT2-like [Benincasa hispida]) HSP 1 Score: 142.1 bits (357), Expect = 2.4e-30 Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0
BLAST of Lsi01G019380 vs. NCBI nr
Match: XP_022928730.1 (E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita moschata] >XP_022928731.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita moschata] >XP_022928732.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita moschata] >XP_022928733.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita moschata] >XP_022928734.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 138.3 bits (347), Expect = 3.5e-29 Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0
BLAST of Lsi01G019380 vs. NCBI nr
Match: XP_022928735.1 (E3 ubiquitin-protein ligase SINAT2-like isoform X2 [Cucurbita moschata] >XP_023543588.1 E3 ubiquitin-protein ligase SINAT2-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 138.3 bits (347), Expect = 3.5e-29 Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0
BLAST of Lsi01G019380 vs. NCBI nr
Match: XP_022967856.1 (E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita maxima] >XP_023543585.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023543586.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023543587.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 138.3 bits (347), Expect = 3.5e-29 Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0
BLAST of Lsi01G019380 vs. NCBI nr
Match: XP_022967857.1 (E3 ubiquitin-protein ligase SINAT2-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 138.3 bits (347), Expect = 3.5e-29 Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0
BLAST of Lsi01G019380 vs. TAIR 10
Match: AT2G41980.1 (Protein with RING/U-box and TRAF-like domains ) HSP 1 Score: 74.7 bits (182), Expect = 4.4e-14 Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 0
BLAST of Lsi01G019380 vs. TAIR 10
Match: AT3G58040.1 (seven in absentia of Arabidopsis 2 ) HSP 1 Score: 74.3 bits (181), Expect = 5.8e-14 Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 0
BLAST of Lsi01G019380 vs. TAIR 10
Match: AT3G61790.1 (Protein with RING/U-box and TRAF-like domains ) HSP 1 Score: 43.1 bits (100), Expect = 1.4e-04 Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 0
BLAST of Lsi01G019380 vs. TAIR 10
Match: AT4G27880.1 (Protein with RING/U-box and TRAF-like domains ) HSP 1 Score: 41.6 bits (96), Expect = 4.2e-04 Identity = 22/68 (32.35%), Postives = 33/68 (48.53%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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