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Lsi01G019240 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CCGTGACATCCTTTTTCTTGGGCCATTTTCAACGCCAATTGCTGTGGATTTTCGCTTAGCTTTCTTCGTCTACAAGGTGTCTCTCTCTCTCTCTCAAAACTATTGCACATTCAAAACTATAAATTCCAGGTTAGTCTCTTAATCCTCCAATCCAGATGATGATTGTTCCTCTAATTGTACAACAATACTTGCAACACTTCAAATTGATCTGCTTCTCCGCTCTGCAACTCTCTTAGTTCTTCTGGGTACTGATTAGATAGATGATTATTTTAAACTTGCCAATTGATTTCGGCTAAAGGGTTGAGATTTCTTGATCCAATTTCTTCATGGGTTTTGTTCTGGAGACATATATTGGTTCTCTTTGCAAAGATTTGGGGTTATTTTTTTTCTGTTGTTTACATTCAGTGCGATTAATCCTCTGGTTCCCCTAAAATTGCAGAACAATCGTCTATCTAGCTGCTTGAACTTGCTTTTATTCATATGGAGTTTTTTAGCACTCTTAGTTTTGTTTTCTTGCTGTAGGGCCAATTTTTGCACCTCTTTTCTCCTATGGATCTCAACGATCTCAACAAGGTTTGGGAAGTTAAACCTTTGAAGAAGATTGGGGAAGATGATGCTCGGAAAGTGCTTGAGAAAATAGCTAAACAGGTGCAACCTATCATGCGCAAACGCAGATGGAAAGTGGAAACTCTTTCTGAGTTCTAGTACTGACTTTATATTCTCTTTTACTTTACAAGTAACTGAGTTTTTAGTTTTGTGTTTTATATTCTTGAATTTTAATTGTAGTCCTGACAATCCGGGTCTCATGGGGGTGAACATAGGAGGAGGTCAGGAAATCAAACTTAGAATTCGGAGGCCGAATAATGAGTGGGATTTCTTCCCTTATGAGCAGATTCTTGACACAATGCTCCATGAGCTTTGCCACATTGTACATGGTCCTCACAATGCTGATTTCTACAGCCTTTTAGATGAACTCAGAAAGGTGATTCTTTCTTTCTCTACTGTTTGTCAAAACCTATTCTGTTTTTGGTTGTTTGGTTTGGTTGGTTGCCCAAATGGTGTGAATTACTTCAAACCTTCTTCAATTGGAAGATCTATTTCACATTTAGCATTCCAGTTCAAAATGGCAGGGAAGAACTTTTCTCATATGAACTGATTAAGGTTGAGTTTGAGATTGACTTTTGGGAGGGTGAAAATGGTTTTTGCCATTAACAACACTTTTCAAATTTTCATAGTAATACAGAAATGTTTAGGAAATTTTAAAATGTGCTTTAAAATAGTTAAGTGTTTTAGAACAAGCACTTAATTAGTGTTTTTCTTTTCCCCAAAAGTTCTTATGGAAGAAGCGTTTTCACTCAAAAGCCCTTTTTCAAGTCATTCCAAATTCAACCTAGAGAAAATTTCAGCTTGTATATATTATTCAAGAAAATAACACAAGGAAAATAACATTTTTTTGGAGAGGCACTACAGATCCTAATCATTCATTAGTGTCTGAGTTGGAGTGTGTGTGTCATTTAGTTAAATTGTTCACTTTGCCAATGCTGACCTATGACAATCTTTAAGAATTGTATTATGGGACATTATTTGGTCATTTGGATTGCTTATTCAATTTGCTCTGCCTTTTTCTGCTCTGATATATGCTGACCGCCTTCCATTCTTTCTTTTTCTTAAGGAATGTGAAGAGCTTATGTGCAAAGGTATCACAGGCACTGGGCAGGGATTTGATCTTCGTGGGAGGCGTTTGGGTGGGATCTCTCACCAACCACCTTTATCATCCCTCCGGCAAACTACCTTAACTGCTGCTGAAAATCGAGCTCGAGGTGGACCATCAGGACCTAAGCGCCTTGGTGGTGACAGCAACATGAAGGCAGTGCTTAGTCCTATACAAGCAGCTGCCATGGCTGCAGAAAGACGATTGAAAGATGATTTGTGGTGTGGTTCCAAGTCTTTGGAGAACAATTCAGATAGAGCCAAAAACATGACTTCTTCCACAGGACCCTCCAGAACTTCAAATGCTTTCACTCCTGTTATATCCCAAATTCCATCAGCTGCTTCCTTTCCTACTCATCAGGAAACTATGGATGATCTGGAAAATTGGCAGTGCAGTGCATGTACCCTTCTTAACCGGGTAAGTTTTCATTGCTGTTTTTTCTTCATAAGGTTTTGGTTAAATTACAAGTTTGTTCCTTGAGTTCTTAAGATTAAGTCTCTTTAGTTCTTCAACTTTCAAATTGTCTATTTGATTATTGTGAAGTTTTGAATTGTTGTCTAAACTTGTAATTTTATATCTAAGATTTGAAAATTGATGCACATATGATGTGTGGACGTTATGGTATCCATAGGTATAAAGGCAGCAGCTAGGAGTGATAGATAGAGATAGTCAAGGGAATCTCTTTTGTAGCATGTCATACATGTTGATACAATGCTAAGTTCTCAAATAAAATATTTAACTTCTTCTGGATATAGAGCCTTCCACAATTGTTGATAGAAACAAGTATTAGTGTAAACAAGTTTAGAGATCTAGTAAACACACGTTTGAAAGTTCAAAGTTGTTGGATTTCCTTATATCTTTTGTAATATTGATTGTGTATTTGATAGGAATGCTATTGGAGTATTATAAGGGTGTACGAGTCATTACTCATTAGATAGGAGAGTTTGTTATGAAATTTGGTTAGAAATAGAGGTTAAGGGAATGAAGAAGGCAAGCATTGTTTTGGAAAAGGAATTAGAGCTTGAGAGTCTCTTAAGATTGGAAGGGTCCAAGTACCTCAAATACTTGATTTATATTGTAATTCTATTATCGTTTATCTTTCAATATATTTAGGCTCTATCAGTATTCTGTAGATATTTATTATTTCTACTTGTAACATTTATTTTCTTATTGGTTGATGGTCTTTATTCTATATAAGAGGACCTTATATTTGTTTTCGTAAGAAAAATACAACAATATGATTATTCTTCCCTAAATTTGAGTAAGGTTATACGGTTTAACTAAGCATATATTAAAACTTGAATTGCAGCCATTGGCTCTGATTTGTGAAGCTTGTGGGAACCATAAGAACAAAATCAACACAAAGACTTGGGCTTGCAAGTTCTGTACGCTTAGCAACAGTACGGATGCAGAAAGATGCCTAGCTTGTGGGGAATGGAGATACTCATATGGCCCTCCCATCTCCACATCTGCTCCTTATATTGGCACTTGA CCGTGACATCCTTTTTCTTGGGCCATTTTCAACGCCAATTGCTGTGGATTTTCGCTTAGCTTTCTTCGTCTACAAGGTGTCTCTCTCTCTCTCTCAAAACTATTGCACATTCAAAACTATAAATTCCAGGTTAGTCTCTTAATCCTCCAATCCAGATGATGATTGTTCCTCTAATTGTACAACAATACTTGCAACACTTCAAATTGATCTGCTTCTCCGCTCTGCAACTCTCTTAGTTCTTCTGGGGCCAATTTTTGCACCTCTTTTCTCCTATGGATCTCAACGATCTCAACAAGGTTTGGGAAGTTAAACCTTTGAAGAAGATTGGGGAAGATGATGCTCGGAAAGTGCTTGAGAAAATAGCTAAACAGGTGCAACCTATCATGCGCAAACGCAGATGGAAAGTGGAAACTCTTTCTGAGTTCTATCCTGACAATCCGGGTCTCATGGGGGTGAACATAGGAGGAGGTCAGGAAATCAAACTTAGAATTCGGAGGCCGAATAATGAGTGGGATTTCTTCCCTTATGAGCAGATTCTTGACACAATGCTCCATGAGCTTTGCCACATTGTACATGGTCCTCACAATGCTGATTTCTACAGCCTTTTAGATGAACTCAGAAAGGAATGTGAAGAGCTTATGTGCAAAGGTATCACAGGCACTGGGCAGGGATTTGATCTTCGTGGGAGGCGTTTGGGTGGGATCTCTCACCAACCACCTTTATCATCCCTCCGGCAAACTACCTTAACTGCTGCTGAAAATCGAGCTCGAGGTGGACCATCAGGACCTAAGCGCCTTGGTGGTGACAGCAACATGAAGGCAGTGCTTAGTCCTATACAAGCAGCTGCCATGGCTGCAGAAAGACGATTGAAAGATGATTTGTGGTGTGGTTCCAAGTCTTTGGAGAACAATTCAGATAGAGCCAAAAACATGACTTCTTCCACAGGACCCTCCAGAACTTCAAATGCTTTCACTCCTGTTATATCCCAAATTCCATCAGCTGCTTCCTTTCCTACTCATCAGGAAACTATGGATGATCTGGAAAATTGGCAGTGCACTTGTGGGAACCATAAGAACAAAATCAACACAAAGACTTGGGCTTGCAAGTTCTGTACGCTTAGCAACAGTACGGATGCAGAAAGATGCCTAGCTTGTGGGGAATGGAGATACTCATATGGCCCTCCCATCTCCACATCTGCTCCTTATATTGGCACTTGA ATGGATCTCAACGATCTCAACAAGGTTTGGGAAGTTAAACCTTTGAAGAAGATTGGGGAAGATGATGCTCGGAAAGTGCTTGAGAAAATAGCTAAACAGGTGCAACCTATCATGCGCAAACGCAGATGGAAAGTGGAAACTCTTTCTGAGTTCTATCCTGACAATCCGGGTCTCATGGGGGTGAACATAGGAGGAGGTCAGGAAATCAAACTTAGAATTCGGAGGCCGAATAATGAGTGGGATTTCTTCCCTTATGAGCAGATTCTTGACACAATGCTCCATGAGCTTTGCCACATTGTACATGGTCCTCACAATGCTGATTTCTACAGCCTTTTAGATGAACTCAGAAAGGAATGTGAAGAGCTTATGTGCAAAGGTATCACAGGCACTGGGCAGGGATTTGATCTTCGTGGGAGGCGTTTGGGTGGGATCTCTCACCAACCACCTTTATCATCCCTCCGGCAAACTACCTTAACTGCTGCTGAAAATCGAGCTCGAGGTGGACCATCAGGACCTAAGCGCCTTGGTGGTGACAGCAACATGAAGGCAGTGCTTAGTCCTATACAAGCAGCTGCCATGGCTGCAGAAAGACGATTGAAAGATGATTTGTGGTGTGGTTCCAAGTCTTTGGAGAACAATTCAGATAGAGCCAAAAACATGACTTCTTCCACAGGACCCTCCAGAACTTCAAATGCTTTCACTCCTGTTATATCCCAAATTCCATCAGCTGCTTCCTTTCCTACTCATCAGGAAACTATGGATGATCTGGAAAATTGGCAGTGCACTTGTGGGAACCATAAGAACAAAATCAACACAAAGACTTGGGCTTGCAAGTTCTGTACGCTTAGCAACAGTACGGATGCAGAAAGATGCCTAGCTTGTGGGGAATGGAGATACTCATATGGCCCTCCCATCTCCACATCTGCTCCTTATATTGGCACTTGA MDLNDLNKVWEVKPLKKIGEDDARKVLEKIAKQVQPIMRKRRWKVETLSEFYPDNPGLMGVNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECEELMCKGITGTGQGFDLRGRRLGGISHQPPLSSLRQTTLTAAENRARGGPSGPKRLGGDSNMKAVLSPIQAAAMAAERRLKDDLWCGSKSLENNSDRAKNMTSSTGPSRTSNAFTPVISQIPSAASFPTHQETMDDLENWQCTCGNHKNKINTKTWACKFCTLSNSTDAERCLACGEWRYSYGPPISTSAPYIGT Homology
BLAST of Lsi01G019240 vs. ExPASy Swiss-Prot
Match: P38838 (DNA-dependent metalloprotease WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=WSS1 PE=1 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.7e-27 Identity = 79/213 (37.09%), Postives = 121/213 (56.81%), Query Frame = 0
BLAST of Lsi01G019240 vs. ExPASy Swiss-Prot
Match: Q9P7B5 (DNA-dependent metalloprotease WSS1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC521.02 PE=3 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 3.5e-12 Identity = 44/125 (35.20%), Postives = 64/125 (51.20%), Query Frame = 0
BLAST of Lsi01G019240 vs. ExPASy Swiss-Prot
Match: O94580 (DNA-dependent metalloprotease WSS1 homolog 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=wss2 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 2.1e-09 Identity = 38/118 (32.20%), Postives = 60/118 (50.85%), Query Frame = 0
BLAST of Lsi01G019240 vs. ExPASy TrEMBL
Match: A0A6J1HRV8 (DNA-dependent metalloprotease WSS1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467224 PE=4 SV=1) HSP 1 Score: 604.4 bits (1557), Expect = 2.8e-169 Identity = 291/329 (88.45%), Postives = 303/329 (92.10%), Query Frame = 0
BLAST of Lsi01G019240 vs. ExPASy TrEMBL
Match: A0A6J1HT53 (DNA-dependent metalloprotease WSS1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467224 PE=4 SV=1) HSP 1 Score: 604.4 bits (1557), Expect = 2.8e-169 Identity = 291/329 (88.45%), Postives = 303/329 (92.10%), Query Frame = 0
BLAST of Lsi01G019240 vs. ExPASy TrEMBL
Match: A0A6J1EKF1 (DNA-dependent metalloprotease WSS1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435471 PE=4 SV=1) HSP 1 Score: 601.7 bits (1550), Expect = 1.8e-168 Identity = 290/329 (88.15%), Postives = 301/329 (91.49%), Query Frame = 0
BLAST of Lsi01G019240 vs. ExPASy TrEMBL
Match: A0A1S4DV14 (LOW QUALITY PROTEIN: DNA-dependent metalloprotease WSS1-like OS=Cucumis melo OX=3656 GN=LOC103486153 PE=4 SV=1) HSP 1 Score: 592.0 bits (1525), Expect = 1.4e-165 Identity = 289/328 (88.11%), Postives = 296/328 (90.24%), Query Frame = 0
BLAST of Lsi01G019240 vs. ExPASy TrEMBL
Match: A0A6J1DF71 (DNA-dependent metalloprotease WSS1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019534 PE=4 SV=1) HSP 1 Score: 565.8 bits (1457), Expect = 1.1e-157 Identity = 279/331 (84.29%), Postives = 291/331 (87.92%), Query Frame = 0
BLAST of Lsi01G019240 vs. NCBI nr
Match: XP_022967822.1 (DNA-dependent metalloprotease WSS1-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 604.4 bits (1557), Expect = 5.7e-169 Identity = 291/329 (88.45%), Postives = 303/329 (92.10%), Query Frame = 0
BLAST of Lsi01G019240 vs. NCBI nr
Match: XP_022967821.1 (DNA-dependent metalloprotease WSS1-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 604.4 bits (1557), Expect = 5.7e-169 Identity = 291/329 (88.45%), Postives = 303/329 (92.10%), Query Frame = 0
BLAST of Lsi01G019240 vs. NCBI nr
Match: XP_022928615.1 (DNA-dependent metalloprotease WSS1-like isoform X1 [Cucurbita moschata] >XP_022928616.1 DNA-dependent metalloprotease WSS1-like isoform X1 [Cucurbita moschata] >XP_022928617.1 DNA-dependent metalloprotease WSS1-like isoform X1 [Cucurbita moschata] >KAG6603250.1 hypothetical protein SDJN03_03859, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033552.1 WSS1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 601.7 bits (1550), Expect = 3.7e-168 Identity = 290/329 (88.15%), Postives = 301/329 (91.49%), Query Frame = 0
BLAST of Lsi01G019240 vs. NCBI nr
Match: XP_023543567.1 (DNA-dependent metalloprotease WSS1-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023543568.1 DNA-dependent metalloprotease WSS1-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 600.1 bits (1546), Expect = 1.1e-167 Identity = 290/329 (88.15%), Postives = 301/329 (91.49%), Query Frame = 0
BLAST of Lsi01G019240 vs. NCBI nr
Match: XP_016899550.1 (PREDICTED: LOW QUALITY PROTEIN: DNA-dependent metalloprotease WSS1-like [Cucumis melo]) HSP 1 Score: 592.0 bits (1525), Expect = 2.9e-165 Identity = 289/328 (88.11%), Postives = 296/328 (90.24%), Query Frame = 0
BLAST of Lsi01G019240 vs. TAIR 10
Match: AT1G55915.1 (zinc ion binding ) HSP 1 Score: 336.7 bits (862), Expect = 2.1e-92 Identity = 191/400 (47.75%), Postives = 233/400 (58.25%), Query Frame = 0
BLAST of Lsi01G019240 vs. TAIR 10
Match: AT5G35690.1 (CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 68.9 bits (167), Expect = 8.1e-12 Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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