Lsi01G019220 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G019220
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 23842638 .. 23842820 (+)
RNA-Seq ExpressionLsi01G019220
SyntenyLsi01G019220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGAGGCAACAGATGCACCTAGCAACGTCCCGACGACGGGCAAAGTAGCCGAAGCACCGCTGGTTGGGCCGGGTGCTGGGGCTGCCGCTTCATTGGCAGCCAAAACCATGCTCAGGGAGGCAGCAACAGCGACGAAGGCGGCACAGGTGAAGTTCTTCATTTCCATGATGAAAAGATAA

mRNA sequence

ATGAGAGAGGCAACAGATGCACCTAGCAACGTCCCGACGACGGGCAAAGTAGCCGAAGCACCGCTGGTTGGGCCGGGTGCTGGGGCTGCCGCTTCATTGGCAGCCAAAACCATGCTCAGGGAGGCAGCAACAGCGACGAAGGCGGCACAGGTGAAGTTCTTCATTTCCATGATGAAAAGATAA

Coding sequence (CDS)

ATGAGAGAGGCAACAGATGCACCTAGCAACGTCCCGACGACGGGCAAAGTAGCCGAAGCACCGCTGGTTGGGCCGGGTGCTGGGGCTGCCGCTTCATTGGCAGCCAAAACCATGCTCAGGGAGGCAGCAACAGCGACGAAGGCGGCACAGGTGAAGTTCTTCATTTCCATGATGAAAAGATAA

Protein sequence

MREATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMMKR
Homology
BLAST of Lsi01G019220 vs. ExPASy TrEMBL
Match: A0A0A0L2P9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572270 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.3e-14
Identity = 50/59 (84.75%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 1  MREATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMMK 60
          MREA DAPSNVPTTGKVAEA L GPGAG AAS  AKTMLREAAT  KAAQ KFFISMMK
Sbjct: 1  MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMK 59

BLAST of Lsi01G019220 vs. ExPASy TrEMBL
Match: A0A151SXF5 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_014921 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 2  REATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMM 59
          +E T+APS  PT GKVAEAPL+GPGAG   S+AA T L E AT  +  QV FF+SMM
Sbjct: 1  KETTEAPSKEPTRGKVAEAPLLGPGAGVGTSVAATTTLMEVAT-MRIMQVTFFMSMM 56

BLAST of Lsi01G019220 vs. ExPASy TrEMBL
Match: A0A6A5PN19 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00032722 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 2   REATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMM 59
           ++ TDAP+  PT GKVAEAPL+G GAGA  S+AA T + EAA  T  AQ  FFISMM
Sbjct: 68  KDNTDAPTKDPTRGKVAEAPLLGAGAGAGTSVAATTAVIEAAAMT-TAQKTFFISMM 123

BLAST of Lsi01G019220 vs. ExPASy TrEMBL
Match: A0A6A5M111 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00018013 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 2  REATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMM 59
          ++ T+AP+  PT G VAEAPL+GPGAGA  S+AA   L EAA A + A   FFISMM
Sbjct: 8  KDNTEAPTKEPTRGNVAEAPLLGPGAGAGTSVAAMAALMEAA-AMRTAHATFFISMM 63

BLAST of Lsi01G019220 vs. NCBI nr
Match: KAG6595645.1 (Serine/threonine-protein kinase Nek6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 46/58 (79.31%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 1   MREATDAPSNVPTTGKVAEAPLVGPGAG-AAASLAAKTMLREAATATKAAQVKFFISM 58
           MREA DAPSNVPTTGKVAEA L GPGAG  AASL AKTM REAATATK A    FISM
Sbjct: 672 MREAADAPSNVPTTGKVAEAALDGPGAGDVAASLVAKTMFREAATATKVATANVFISM 729

BLAST of Lsi01G019220 vs. NCBI nr
Match: KYP59486.1 (hypothetical protein KK1_014921, partial [Cajanus cajan])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 2  REATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMM 59
          +E T+APS  PT GKVAEAPL+GPGAG   S+AA T L E AT  +  QV FF+SMM
Sbjct: 1  KETTEAPSKEPTRGKVAEAPLLGPGAGVGTSVAATTTLMEVAT-MRIMQVTFFMSMM 56

BLAST of Lsi01G019220 vs. NCBI nr
Match: KAF1897960.1 (hypothetical protein Lal_00032722 [Lupinus albus])

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 2   REATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMM 59
           ++ TDAP+  PT GKVAEAPL+G GAGA  S+AA T + EAA  T  AQ  FFISMM
Sbjct: 68  KDNTDAPTKDPTRGKVAEAPLLGAGAGAGTSVAATTAVIEAAAMT-TAQKTFFISMM 123

BLAST of Lsi01G019220 vs. NCBI nr
Match: KAF1866629.1 (hypothetical protein Lal_00018013 [Lupinus albus])

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-04
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 2  REATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMM 59
          ++ T+AP+  PT G VAEAPL+GPGAGA  S+AA   L EAA A + A   FFISMM
Sbjct: 8  KDNTEAPTKEPTRGNVAEAPLLGPGAGAGTSVAAMAALMEAA-AMRTAHATFFISMM 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2P96.3e-1484.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572270 PE=4 SV=1[more]
A0A151SXF51.1e-0561.40Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_014921 PE=4 S... [more]
A0A6A5PN191.6e-0461.40Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00032722 PE=4 SV=1[more]
A0A6A5M1112.7e-0457.89Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00018013 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6595645.12.3e-1079.31Serine/threonine-protein kinase Nek6, partial [Cucurbita argyrosperma subsp. sor... [more]
KYP59486.12.2e-0561.40hypothetical protein KK1_014921, partial [Cajanus cajan][more]
KAF1897960.13.2e-0461.40hypothetical protein Lal_00032722 [Lupinus albus][more]
KAF1866629.15.5e-0457.89hypothetical protein Lal_00018013 [Lupinus albus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G019220.1Lsi01G019220.1mRNA