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Lsi01G019150 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTACTTCTACTCCTATTCAGTATCGTTTCTACGGCGCCGCCACCGGCAATGGAGCATTGGAGGTTCGATTGCGCTATTTCAACCGTCTGATTTCTCTTTCTCCGCTCGCCGGACATCCGCCGCGAATCCTCCATGAAACTCCACCGATTCGACTCAACGATACAGTCTTCCATCTCTCTTTTCCCCAACTCCAAGATCCAATGTCCTACATCCCGCGCTTGCTCTCCTCGCTCAACATTCGCCCCGCCGTTTCCGAAGTCGTTGCTCGGAAGATCGCGTCCTACATCGTTCAAATCTCCGCCGGAAACAGAGAGTCGAATTTCCACATCCTCGCGGAGCTCGATTTCATCCGAGTCATCTGGATGGAGGAAGAAGAATCAATGGTGGAGGAGACAGTGATGCTCGATGAAGCTCCGCTGTCGAGGAGAGGAGTGGCGGAGGCGGCGGCGGCGATGGAGAGGGTGAGGAAGTTGAGATCGGAAGACAAGGGAGAGAGTTTGGGAGATTGTAGTATCTGTTTAGAAGAACTGAGTTGTGAAAAGAGGAAGGTGATAAGGATTCCCTGCGGACATGTGTATCATGAATCATGCATCTTCAAGTGGCTTAGAAACCATAATTCTTGCCCATTGTGTAGAAGCTCATTGCCATTGCAAGTGAAATTACTTGTTTTTCATGAGATTTTGGGATTATAA ATGTCTACTTCTACTCCTATTCAGTATCGTTTCTACGGCGCCGCCACCGGCAATGGAGCATTGGAGGTTCGATTGCGCTATTTCAACCGTCTGATTTCTCTTTCTCCGCTCGCCGGACATCCGCCGCGAATCCTCCATGAAACTCCACCGATTCGACTCAACGATACAGTCTTCCATCTCTCTTTTCCCCAACTCCAAGATCCAATGTCCTACATCCCGCGCTTGCTCTCCTCGCTCAACATTCGCCCCGCCGTTTCCGAAGTCGTTGCTCGGAAGATCGCGTCCTACATCGTTCAAATCTCCGCCGGAAACAGAGAGTCGAATTTCCACATCCTCGCGGAGCTCGATTTCATCCGAGTCATCTGGATGGAGGAAGAAGAATCAATGGTGGAGGAGACAGTGATGCTCGATGAAGCTCCGCTGTCGAGGAGAGGAGTGGCGGAGGCGGCGGCGGCGATGGAGAGGGTGAGGAAGTTGAGATCGGAAGACAAGGGAGAGAGTTTGGGAGATTGTAGTATCTGTTTAGAAGAACTGAGTTGTGAAAAGAGGAAGGTGATAAGGATTCCCTGCGGACATGTGTATCATGAATCATGCATCTTCAAGTGGCTTAGAAACCATAATTCTTGCCCATTGTGTAGAAGCTCATTGCCATTGCAAGTGAAATTACTTGTTTTTCATGAGATTTTGGGATTATAA ATGTCTACTTCTACTCCTATTCAGTATCGTTTCTACGGCGCCGCCACCGGCAATGGAGCATTGGAGGTTCGATTGCGCTATTTCAACCGTCTGATTTCTCTTTCTCCGCTCGCCGGACATCCGCCGCGAATCCTCCATGAAACTCCACCGATTCGACTCAACGATACAGTCTTCCATCTCTCTTTTCCCCAACTCCAAGATCCAATGTCCTACATCCCGCGCTTGCTCTCCTCGCTCAACATTCGCCCCGCCGTTTCCGAAGTCGTTGCTCGGAAGATCGCGTCCTACATCGTTCAAATCTCCGCCGGAAACAGAGAGTCGAATTTCCACATCCTCGCGGAGCTCGATTTCATCCGAGTCATCTGGATGGAGGAAGAAGAATCAATGGTGGAGGAGACAGTGATGCTCGATGAAGCTCCGCTGTCGAGGAGAGGAGTGGCGGAGGCGGCGGCGGCGATGGAGAGGGTGAGGAAGTTGAGATCGGAAGACAAGGGAGAGAGTTTGGGAGATTGTAGTATCTGTTTAGAAGAACTGAGTTGTGAAAAGAGGAAGGTGATAAGGATTCCCTGCGGACATGTGTATCATGAATCATGCATCTTCAAGTGGCTTAGAAACCATAATTCTTGCCCATTGTGTAGAAGCTCATTGCCATTGCAAGTGAAATTACTTGTTTTTCATGAGATTTTGGGATTATAA MSTSTPIQYRFYGAATGNGALEVRLRYFNRLISLSPLAGHPPRILHETPPIRLNDTVFHLSFPQLQDPMSYIPRLLSSLNIRPAVSEVVARKIASYIVQISAGNRESNFHILAELDFIRVIWMEEEESMVEETVMLDEAPLSRRGVAEAAAAMERVRKLRSEDKGESLGDCSICLEELSCEKRKVIRIPCGHVYHESCIFKWLRNHNSCPLCRSSLPLQVKLLVFHEILGL Homology
BLAST of Lsi01G019150 vs. ExPASy Swiss-Prot
Match: Q9C7I1 (RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.7e-08 Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 0
BLAST of Lsi01G019150 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 3.0e-08 Identity = 26/61 (42.62%), Postives = 34/61 (55.74%), Query Frame = 0
BLAST of Lsi01G019150 vs. ExPASy Swiss-Prot
Match: Q6AXU4 (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 3.9e-08 Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 0
BLAST of Lsi01G019150 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.1e-08 Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 0
BLAST of Lsi01G019150 vs. ExPASy Swiss-Prot
Match: Q9CY62 (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.1e-08 Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 0
BLAST of Lsi01G019150 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 3.5e-68 Identity = 137/222 (61.71%), Postives = 174/222 (78.38%), Query Frame = 0
BLAST of Lsi01G019150 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 3.5e-68 Identity = 137/222 (61.71%), Postives = 174/222 (78.38%), Query Frame = 0
BLAST of Lsi01G019150 vs. ExPASy TrEMBL
Match: A0A0A0K696 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 1.2e-63 Identity = 130/218 (59.63%), Postives = 164/218 (75.23%), Query Frame = 0
BLAST of Lsi01G019150 vs. ExPASy TrEMBL
Match: A0A0A0K2W2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 1.2e-63 Identity = 130/218 (59.63%), Postives = 164/218 (75.23%), Query Frame = 0
BLAST of Lsi01G019150 vs. ExPASy TrEMBL
Match: A0A5A7TLM1 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001430 PE=4 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 4.5e-52 Identity = 120/225 (53.33%), Postives = 153/225 (68.00%), Query Frame = 0
BLAST of Lsi01G019150 vs. NCBI nr
Match: XP_038883574.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]) HSP 1 Score: 277.7 bits (709), Expect = 9.0e-71 Identity = 142/224 (63.39%), Postives = 173/224 (77.23%), Query Frame = 0
BLAST of Lsi01G019150 vs. NCBI nr
Match: XP_016899530.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29842.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 268.1 bits (684), Expect = 7.1e-68 Identity = 137/222 (61.71%), Postives = 174/222 (78.38%), Query Frame = 0
BLAST of Lsi01G019150 vs. NCBI nr
Match: XP_004144954.1 (uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical protein Csa_020356 [Cucumis sativus]) HSP 1 Score: 253.1 bits (645), Expect = 2.4e-63 Identity = 130/218 (59.63%), Postives = 164/218 (75.23%), Query Frame = 0
BLAST of Lsi01G019150 vs. NCBI nr
Match: XP_011659694.1 (E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus] >KGN43356.1 hypothetical protein Csa_020163 [Cucumis sativus]) HSP 1 Score: 253.1 bits (645), Expect = 2.4e-63 Identity = 130/218 (59.63%), Postives = 164/218 (75.23%), Query Frame = 0
BLAST of Lsi01G019150 vs. NCBI nr
Match: KAG6603237.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 230.7 bits (587), Expect = 1.3e-56 Identity = 124/231 (53.68%), Postives = 155/231 (67.10%), Query Frame = 0
BLAST of Lsi01G019150 vs. TAIR 10
Match: AT1G18770.1 (RING/U-box superfamily protein ) HSP 1 Score: 67.0 bits (162), Expect = 2.3e-11 Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 0
BLAST of Lsi01G019150 vs. TAIR 10
Match: AT5G37200.1 (RING/U-box superfamily protein ) HSP 1 Score: 63.5 bits (153), Expect = 2.5e-10 Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 0
BLAST of Lsi01G019150 vs. TAIR 10
Match: AT3G60080.1 (RING/U-box superfamily protein ) HSP 1 Score: 62.4 bits (150), Expect = 5.5e-10 Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of Lsi01G019150 vs. TAIR 10
Match: AT2G44330.1 (RING/U-box superfamily protein ) HSP 1 Score: 61.6 bits (148), Expect = 9.5e-10 Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 0
BLAST of Lsi01G019150 vs. TAIR 10
Match: AT1G35330.1 (RING/U-box superfamily protein ) HSP 1 Score: 61.2 bits (147), Expect = 1.2e-09 Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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