Lsi01G019130 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G019130
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein cornichon-like protein 1 isoform X1
Locationchr01: 23559272 .. 23560347 (-)
RNA-Seq ExpressionLsi01G019130
SyntenyLsi01G019130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGTTCTGTTGCACCTCACAGGTGTAAGAAGAAATATAAATAAATAGAGATGGGTTAGCAATTAAATGATAACTTGTGAAATTTCGTTCTGATTAAGGGAGAAGAACAAGAATTTTAATAACACTACTACAGATGTTGGATACTTTTGTCATAATTAGTAATTACTAAGAACCGCCAAAAGGACTATCGTGTAAGGGCATCCCTATCCCTTCTCTTGTGAAAACTTTCAGGCAATAACTAATTGACTCATTGAGTCTTTGGGAAGAAAAACATCAGATAATCATTGGAAGGGGAGGGGAAGGGATGGGGGGAGGGGACGTGGTGCCTATTATTGCTTTGTTCATTCTTTCCAAACGTTCTTATTCCATGTAGCTATTCCAGTACTATACTGAAATTTAATTCCATTTGATAGGTCCTCCATCAACCGAGGTATGGCAACTTGTTTGAATCTTGCATCCGTTAAATCAGTGTAATTGATTTTCAATGATGGATATAGACCTACTGCTGCTCTTGTTTAAGAATAAAACTAAAGTTTTCAAATGTAAGATAACCTATTGTATGAACCTTGGATCCTACAAAATGTCTTTTCTAGATTCTCAGTTATGGATAGACGTCTACTGCTGATATTTTGTAAGAATAAAACTAAAATTTTCTAATGTAAGTTTCTATTGCACTAGTTGGACTGAGAACTTCTTTCAAGTATTTCTCTTTTTTTTTGTGTGTATGTGTGTGTGTGTTTTTATGACATGTATTATCCGGATACAATGTCTCAGGTTCTTGAAGAGGGAGCATCTTATTGATGTCACTGAGGTGTTTAGAGCTCTTAAACGTGAGAAATATTTCCGTTTGGCCAAGCTTATCTTCTACTTGCTTCTGTTCCTCATAGTAATATTCAGGTCAGTCTGCATTTTCCACTCTCATTCCTCTCAACTATTTAGAAGGTGGGATTTTTCTGATTGAAGTTTTCCTTATTGTTTTCTGTATAGAATAATAATGGTTGCAGGAATGAAATCTGTTTTTGACTCTGCACATGAAGATATAGACATTCGCTCCACTGTTCTCGAATTCTAG

mRNA sequence

ATGGAAAGTTCTGTTGCACCTCACAGGTTCTTGAAGAGGGAGCATCTTATTGATGTCACTGAGGTGTTTAGAGCTCTTAAACGTGAGAAATATTTCCGTTTGGCCAAGCTTATCTTCTACTTGCTTCTGTTCCTCATAGTAATATTCAGAATAATAATGGTTGCAGGAATGAAATCTGTTTTTGACTCTGCACATGAAGATATAGACATTCGCTCCACTGTTCTCGAATTCTAG

Coding sequence (CDS)

ATGGAAAGTTCTGTTGCACCTCACAGGTTCTTGAAGAGGGAGCATCTTATTGATGTCACTGAGGTGTTTAGAGCTCTTAAACGTGAGAAATATTTCCGTTTGGCCAAGCTTATCTTCTACTTGCTTCTGTTCCTCATAGTAATATTCAGAATAATAATGGTTGCAGGAATGAAATCTGTTTTTGACTCTGCACATGAAGATATAGACATTCGCTCCACTGTTCTCGAATTCTAG

Protein sequence

MESSVAPHRFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSAHEDIDIRSTVLEF
Homology
[Close]
BLAST of Lsi01G019130 vs. ExPASy TrEMBL
Match: A0A5A7T2J2 (Protein cornichon-like protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00720 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.5e-23
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 9  RFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSAHEDI 68
          RFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVA MKSVFDSA EDI
Sbjct: 11 RFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAEMKSVFDSAPEDI 70

Query: 69 DIRSTVLEF 78
          DIRS+VLE+
Sbjct: 71 DIRSSVLEY 79

[Close]
BLAST of Lsi01G019130 vs. ExPASy TrEMBL
Match: A0A6J1HTE7 (protein cornichon homolog 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467288 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-23
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 10  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSAHEDID 69
           FLK+EHLIDVTEVFR LKREKYFRLAKLIFYLLLFL+VIFRIIMVAGMKSVFDSA +DID
Sbjct: 87  FLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLLFLVVIFRIIMVAGMKSVFDSAPDDID 146

Query: 70  IRSTVLEF 78
           IRSTVLEF
Sbjct: 147 IRSTVLEF 154

[Close]
BLAST of Lsi01G019130 vs. ExPASy TrEMBL
Match: A0A6J1ESA6 (protein cornichon homolog 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435524 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-23
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 10  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSAHEDID 69
           FLK+EHLIDVTEVFR LKREKYFRLAKLIFYLLLFL+VIFRIIMVAGMKSVFDSA +DID
Sbjct: 87  FLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLLFLVVIFRIIMVAGMKSVFDSAPDDID 146

Query: 70  IRSTVLEF 78
           IRSTVLEF
Sbjct: 147 IRSTVLEF 154

[Close]
BLAST of Lsi01G019130 vs. ExPASy TrEMBL
Match: A0A6J1HRR4 (protein cornichon homolog 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466123 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.5e-23
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 10  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSAHEDID 69
           FLKREHLIDVTEVF+ LKREKYFR AKLIFYLLLFL+VIFRIIMVAGMKSVFDSA EDID
Sbjct: 87  FLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFRIIMVAGMKSVFDSAPEDID 146

Query: 70  IRSTVLEF 78
           IRSTVLEF
Sbjct: 147 IRSTVLEF 154

[Close]
BLAST of Lsi01G019130 vs. ExPASy TrEMBL
Match: A0A6J1EB17 (protein cornichon homolog 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432423 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.5e-23
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 10  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSAHEDID 69
           FLKREHLIDVTEVF+ LKREKYFR AKLIFYLLLFL+VIFRIIMVAGMKSVFDSA EDID
Sbjct: 87  FLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFRIIMVAGMKSVFDSAPEDID 146

Query: 70  IRSTVLEF 78
           IRSTVLEF
Sbjct: 147 IRSTVLEF 154

[Close]
BLAST of Lsi01G019130 vs. NCBI nr
Match: XP_038883915.1 (protein cornichon homolog 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 120.6 bits (301), Expect = 6.1e-24
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 10  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSAHEDID 69
           FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSA EDID
Sbjct: 87  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSAPEDID 146

Query: 70  IRSTVLEF 78
           IRS+VLEF
Sbjct: 147 IRSSVLEF 154

[Close]
BLAST of Lsi01G019130 vs. NCBI nr
Match: KAA0035787.1 (protein cornichon-like protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 3.0e-23
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 9  RFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSAHEDI 68
          RFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVA MKSVFDSA EDI
Sbjct: 11 RFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAEMKSVFDSAPEDI 70

Query: 69 DIRSTVLEF 78
          DIRS+VLE+
Sbjct: 71 DIRSSVLEY 79

[Close]
BLAST of Lsi01G019130 vs. NCBI nr
Match: XP_022928680.1 (protein cornichon homolog 1-like isoform X1 [Cucurbita moschata] >KAG6603241.1 Protein cornichon-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.9 bits (294), Expect = 4.0e-23
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 10  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSAHEDID 69
           FLK+EHLIDVTEVFR LKREKYFRLAKLIFYLLLFL+VIFRIIMVAGMKSVFDSA +DID
Sbjct: 87  FLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLLFLVVIFRIIMVAGMKSVFDSAPDDID 146

Query: 70  IRSTVLEF 78
           IRSTVLEF
Sbjct: 147 IRSTVLEF 154

[Close]
BLAST of Lsi01G019130 vs. NCBI nr
Match: XP_022967916.1 (protein cornichon homolog 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 117.9 bits (294), Expect = 4.0e-23
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 10  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSAHEDID 69
           FLK+EHLIDVTEVFR LKREKYFRLAKLIFYLLLFL+VIFRIIMVAGMKSVFDSA +DID
Sbjct: 87  FLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLLFLVVIFRIIMVAGMKSVFDSAPDDID 146

Query: 70  IRSTVLEF 78
           IRSTVLEF
Sbjct: 147 IRSTVLEF 154

[Close]
BLAST of Lsi01G019130 vs. NCBI nr
Match: XP_023543605.1 (protein cornichon homolog 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 4.0e-23
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 10  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAGMKSVFDSAHEDID 69
           FLK+EHLIDVTEVFR LKREKYFRLAKLIFYLLLFL+VIFRIIMVAGMKSVFDSA +DID
Sbjct: 87  FLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLLFLVVIFRIIMVAGMKSVFDSAPDDID 146

Query: 70  IRSTVLEF 78
           IRSTVLEF
Sbjct: 147 IRSTVLEF 154

[Close]
BLAST of Lsi01G019130 vs. TAIR 10
Match: AT3G12180.1 (Cornichon family protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.5e-04
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 10  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVA 56
           + +R +LIDVTEVFR +  EK  R  KL FY+ LF++V+FR+ + A
Sbjct: 87  YKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIMVVFRLTLSA 132

The following BLAST results are available for this feature:
BLAST of Lsi01G019130 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G019130 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T2J21.5e-2394.20Protein cornichon-like protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1HTE71.9e-2392.65protein cornichon homolog 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1ESA61.9e-2392.65protein cornichon homolog 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1HRR42.5e-2392.65protein cornichon homolog 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1EB172.5e-2392.65protein cornichon homolog 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
BLAST of Lsi01G019130 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038883915.16.1e-2497.06protein cornichon homolog 1 isoform X1 [Benincasa hispida][more]
KAA0035787.13.0e-2394.20protein cornichon-like protein 1 isoform X1 [Cucumis melo var. makuwa][more]
XP_022928680.14.0e-2392.65protein cornichon homolog 1-like isoform X1 [Cucurbita moschata] >KAG6603241.1 P... [more]
XP_022967916.14.0e-2392.65protein cornichon homolog 1-like isoform X1 [Cucurbita maxima][more]
XP_023543605.14.0e-2392.65protein cornichon homolog 1-like isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Lsi01G019130 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G12180.11.5e-0450.00Cornichon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003377CornichonPFAMPF03311Cornichoncoord: 9..49
e-value: 2.8E-8
score: 34.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G019130.1Lsi01G019130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane