Lsi01G018970 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G018970
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosomal protein S12
Location	chr01: 22164922 .. 22166492 (-)
RNA-Seq Expression	Lsi01G018970
Synteny	Lsi01G018970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAAGCAAAATGAGATCCTTCCTAGTAGGAATAATGCTAAATTATATTGTGTATGTTTGGTTTATTGCTTGGTTTATATTTTATGACGTGTGATTTTCTATGATAGTTATGACACGTTGATGCATGTTGTGGAATATATGTTTAGACCATAGTATGTTGAAGCATTTATGGTTATGACATTGTTGGTAGAATGTTGACGCATGCAAAGTATGAATATGGATCATGGCTTGTTGATGCTTTTCATAATAGGTTATTGTCTATAGTGTATTAAAGTACGGTATATAATGATTCATGTGGTTAAATTTGATTATGCATATATCATGGGATTACATGTGAATGAGAGTTGATGCCACCTTAGTTTGTTGATGCTGCTAAGAGTGAATTTTGGTTGATGCCTATCCACATTAACTAACTATCCCATAATTGTGTTGATGTGGCTTATGCATTCCATAATGAAGCATGAGGGTCAGATATTATCATAGTTGTTAATGCCAACTAGATTGCAACTGTGTTGATGTATTGTCGTAGGTCAATTATTATCTTAGTTGTTAATGCAACTAAGGGTAAATTTGATTGATGCCTATCCATGTTGACTAAATTGAAGGAATTGAATTCCTAGGGAAAGGAATTTATCGCAATGTGATTTTAATTATTCAAGTGTGAATTTAAACGAAACAGATAAAATATAAAGAAAACAGGATAAACAACATGCTTTTAAGGGAAGAACAAAGAGCTTACGCTTGATAAAATTCCTTCTTCATTTAGCAATTTTCTTTGAGATAATGAACGTTTCACGAACAAAAACAAAAAGTGACGACACCACCAATGAAAACTTGCTATTCTCAAGGATATCAAGTCTTGGATATGTGGATTCCAAAGTACTTGGTAAGGAATGCTTTTGTGAGAGAGGAAAATACCAAAATTCCAGCAGAGAGCTCTAATTTTTTTCTATGAAGAGAAATATTTAACTTCTTTCATTCCCTCTTTTTGTGAGAGAGTAGGAGGGAGTTCCATAACTCCCTCTCCACTACGTGAAAATAATTCCCTCCGGGAGTTATCTAATTAATTCAATGTTAATTATTTAAATAACATCAATAATTGAAATTGAATTAATTAATATAAATATATGAAATCTACTTTAATATATATAGTGAGAGGGCAAAAAGAGGGGGGAAGGACAAAGGAAAGAGCGATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGTTTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGAAGAAGAGGCAGATCTAAATATGGTGCAGAAAAACAAAAATCGATATGA

mRNA sequence

GGTAAGCAAAATGAGATCCTTCCTAGTAGGAATAATGCTAAATTATATTGTACCATAGTTATTGTCTATAGTGTATTAAAGTACGTGAGAGGGCAAAAAGAGGGGGGAAGGACAAAGGAAAGAGCGATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGTTTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGAAGAAGAGGCAGATCTAAATATGGTGCAGAAAAACAAAAATCGATATGA

Coding sequence (CDS)

GGTAAGCAAAATGAGATCCTTCCTAGTAGGAATAATGCTAAATTATATTGTACCATAGTTATTGTCTATAGTGTATTAAAGTACGTGAGAGGGCAAAAAGAGGGGGGAAGGACAAAGGAAAGAGCGATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGTTTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGAAGAAGAGGCAGATCTAAATATGGTGCAGAAAAACAAAAATCGATATGA

Protein sequence

GKQNEILPSRNNAKLYCTIVIVYSVLKYVRGQKEGGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAEKQKSI

Homology

[Close]

BLAST of Lsi01G018970 vs. ExPASy Swiss-Prot
Match: P68535 (Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.0e-63
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPSLNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]

BLAST of Lsi01G018970 vs. ExPASy Swiss-Prot
Match: P68536 (Ribosomal protein S12, mitochondrial OS=Petunia parodii OX=55890 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.0e-63
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPSLNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]

BLAST of Lsi01G018970 vs. ExPASy Swiss-Prot
Match: P27070 (Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.0e-63
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVRL+NR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLANR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIF HIPGEGHN QEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFPHIPGEGHNSQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]

BLAST of Lsi01G018970 vs. ExPASy Swiss-Prot
Match: Q95869 (Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-61
Identity = 119/125 (95.20%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPT NQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTKNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHN QEHSMVLIRGGRVKDSPGVK HCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNSQEHSMVLIRGGRVKDSPGVKFHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]

BLAST of Lsi01G018970 vs. ExPASy Swiss-Prot
Match: P60096 (Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.7e-61
Identity = 118/125 (94.40%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHN QEH MVLIRGGRVKDSPGVKSH IRGVKDLLGIP+RRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNSQEHPMVLIRGGRVKDSPGVKSHRIRGVKDLLGIPNRRRGRSKYGAE 120

Query: 163 KQKSI 168
           + KSI
Sbjct: 121 RPKSI 125

[Close]

BLAST of Lsi01G018970 vs. ExPASy TrEMBL
Match: A0A072TTI0 (NADH dehydrogenase subunit 3 OS=Medicago truncatula OX=3880 GN=MTR_0082s0040 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.9e-64
Identity = 130/152 (85.53%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 16  YCTIVIVYSVLKYVRGQKEGGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGV 75
           +  I+ + S+ ++ RG   GGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGV
Sbjct: 214 FLLILTIGSLYEWKRG---GGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGV 273

Query: 76  RPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 135
           RPRV  RTPKKPNSA RKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKD PGV
Sbjct: 274 RPRVFKRTPKKPNSAQRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDLPGV 333

Query: 136 KSHCIRGVKDLLGIPDRRRGRSKYGAEKQKSI 168
           KSHCIRGVKDLLGIPDRRRGRSKYGAEK KSI
Sbjct: 334 KSHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI 362

[Close]

BLAST of Lsi01G018970 vs. ExPASy TrEMBL
Match: A0A7D6BYE6 (Ribosomal protein S12 OS=Luffa acutangula OX=56866 GN=rps12 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 9.2e-63
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]

BLAST of Lsi01G018970 vs. ExPASy TrEMBL
Match: W6JLR7 (Ribosomal protein S12 OS=Hevea brasiliensis OX=3981 GN=rps12 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 9.2e-63
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]

BLAST of Lsi01G018970 vs. ExPASy TrEMBL
Match: A0A5J6Y1K8 (Ribosomal protein S12 OS=Manihot esculenta OX=3983 GN=rps12 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 9.2e-63
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]

BLAST of Lsi01G018970 vs. ExPASy TrEMBL
Match: A0A251RWN6 (NADH dehydrogenase subunit 3 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr16g0504411 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.6e-62
Identity = 126/135 (93.33%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 33  KEGGRTK-ERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAP 92
           K GGRTK + AMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAP
Sbjct: 95  KIGGRTKVKSAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAP 154

Query: 93  RKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPD 152
           RKIAKVRLSNRHDIFAHIPGEGHN QEHS+VLIRGGRVKDSPGVKSHCIRGVKDLLGIPD
Sbjct: 155 RKIAKVRLSNRHDIFAHIPGEGHNSQEHSIVLIRGGRVKDSPGVKSHCIRGVKDLLGIPD 214

Query: 153 RRRGRSKYGAEKQKS 167
           RR+GRSKYGAEK KS
Sbjct: 215 RRKGRSKYGAEKPKS 229

[Close]

BLAST of Lsi01G018970 vs. NCBI nr
Match: KAG4934588.1 (hypothetical protein JHK85_049507 [Glycine max] >KAG4936278.1 hypothetical protein JHK85_051197 [Glycine max] >KAG4987246.1 hypothetical protein JHK86_034937 [Glycine max] >KAG4987259.1 hypothetical protein JHK86_034950 [Glycine max] >KAG5006827.1 hypothetical protein JHK85_025369 [Glycine max])

HSP 1 Score: 260.8 bits (665), Expect = 8.2e-66
Identity = 130/133 (97.74%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 35  GGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKI 94
           GGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKI
Sbjct: 62  GGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKI 121

Query: 95  AKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRR 154
           AKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKD PGVKSHCIRGVKDLLGIPDRRR
Sbjct: 122 AKVRLSNRHDIFAHIPGEGHNSQEHSMVLIRGGRVKDLPGVKSHCIRGVKDLLGIPDRRR 181

Query: 155 GRSKYGAEKQKSI 168
           GRSKYGAEK KSI
Sbjct: 182 GRSKYGAEKPKSI 194

[Close]

BLAST of Lsi01G018970 vs. NCBI nr
Match: KEH16845.1 (ribosomal protein S12C [Medicago truncatula])

HSP 1 Score: 253.8 bits (647), Expect = 1.0e-63
Identity = 130/152 (85.53%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 16  YCTIVIVYSVLKYVRGQKEGGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGV 75
           +  I+ + S+ ++ RG   GGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGV
Sbjct: 214 FLLILTIGSLYEWKRG---GGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGV 273

Query: 76  RPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 135
           RPRV  RTPKKPNSA RKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKD PGV
Sbjct: 274 RPRVFKRTPKKPNSAQRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDLPGV 333

Query: 136 KSHCIRGVKDLLGIPDRRRGRSKYGAEKQKSI 168
           KSHCIRGVKDLLGIPDRRRGRSKYGAEK KSI
Sbjct: 334 KSHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI 362

[Close]

BLAST of Lsi01G018970 vs. NCBI nr
Match: YP_009709935.1 (ribosomal protein S12 [Manihot esculenta] >YP_009913612.1 ribosomal protein S12 [Luffa acutangula] >QFO87087.1 ribosomal protein S12 [Manihot esculenta] >QLJ93025.1 ribosomal protein S12 [Luffa acutangula] >BAO50919.1 ribosomal protein S12 [Hevea brasiliensis])

HSP 1 Score: 249.6 bits (636), Expect = 1.9e-62
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]

BLAST of Lsi01G018970 vs. NCBI nr
Match: XP_023545340.1 (uncharacterized protein LOC111804778 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.4 bits (633), Expect = 4.2e-62
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+STRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]

BLAST of Lsi01G018970 vs. NCBI nr
Match: QNJ89401.1 (ribosomal protein S12 [Oenanthe virgata] >QTC08359.1 ribosomal protein S12 [Coriandrum sativum] >QYA18064.1 ribosomal protein S12 [Apium leptophyllum])

HSP 1 Score: 247.7 bits (631), Expect = 7.2e-62
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]

BLAST of Lsi01G018970 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 230.7 bits (587), Expect = 8.5e-61
Identity = 115/125 (92.00%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPT NQLIRHGREEKRRTDRTRA D+CPQK GV PRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHN QEHS VLIRGGRVKDSPGVKSHCIRGVKDL+GIP RRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]

BLAST of Lsi01G018970 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 230.7 bits (587), Expect = 8.5e-61
Identity = 115/125 (92.00%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPT NQLIRHGREEKRRTDRTRA D+CPQK GV PRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1   MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
           HDIFAHIPGEGHN QEHS VLIRGGRVKDSPGVKSHCIRGVKDL+GIP RRRGRSKYGAE
Sbjct: 61  HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE 120

Query: 163 KQKSI 168
           K KSI
Sbjct: 121 KPKSI 125

[Close]

BLAST of Lsi01G018970 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 141.4 bits (355), Expect = 6.8e-34
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VRL++ 
Sbjct: 1   MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSG 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
            +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG  D +G+ DR++GRSKYG +
Sbjct: 61  FEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGVK 120

Query: 163 KQK 166
           K K
Sbjct: 121 KPK 123

[Close]

BLAST of Lsi01G018970 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 141.4 bits (355), Expect = 6.8e-34
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VRL++ 
Sbjct: 1   MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSG 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
            +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG  D +G+ DR++GRSKYG +
Sbjct: 61  FEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGVK 120

Query: 163 KQK 166
           K K
Sbjct: 121 KPK 123

[Close]

BLAST of Lsi01G018970 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 141.4 bits (355), Expect = 6.8e-34
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 43  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 102
           MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VRL++ 
Sbjct: 1   MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSG 60

Query: 103 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 162
            +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG  D +G+ DR++GRSKYG +
Sbjct: 61  FEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGVK 120

Query: 163 KQK 166
           K K
Sbjct: 121 KPK 123

The following BLAST results are available for this feature:

BLAST of Lsi01G018970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P68535	3.0e-63	96.80	Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV...	[more]
P68536	3.0e-63	96.80	Ribosomal protein S12, mitochondrial OS=Petunia parodii OX=55890 GN=RPS12 PE=3 S...	[more]
P27070	4.0e-63	96.00	Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1	[more]
Q95869	1.3e-61	95.20	Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPS12 PE...	[more]
P60096	3.7e-61	94.40	Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE...	[more]

BLAST of Lsi01G018970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A072TTI0	4.9e-64	85.53	NADH dehydrogenase subunit 3 OS=Medicago truncatula OX=3880 GN=MTR_0082s0040 PE=...	[more]
A0A7D6BYE6	9.2e-63	99.20	Ribosomal protein S12 OS=Luffa acutangula OX=56866 GN=rps12 PE=3 SV=1	[more]
W6JLR7	9.2e-63	99.20	Ribosomal protein S12 OS=Hevea brasiliensis OX=3981 GN=rps12 PE=3 SV=1	[more]
A0A5J6Y1K8	9.2e-63	99.20	Ribosomal protein S12 OS=Manihot esculenta OX=3983 GN=rps12 PE=3 SV=1	[more]
A0A251RWN6	1.6e-62	93.33	NADH dehydrogenase subunit 3 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr16g05044...	[more]

BLAST of Lsi01G018970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG4934588.1	8.2e-66	97.74	hypothetical protein JHK85_049507 [Glycine max] >KAG4936278.1 hypothetical prote...	[more]
KEH16845.1	1.0e-63	85.53	ribosomal protein S12C [Medicago truncatula]	[more]
YP_009709935.1	1.9e-62	99.20	ribosomal protein S12 [Manihot esculenta] >YP_009913612.1 ribosomal protein S12 ...	[more]
XP_023545340.1	4.2e-62	98.40	uncharacterized protein LOC111804778 [Cucurbita pepo subsp. pepo]	[more]
QNJ89401.1	7.2e-62	98.40	ribosomal protein S12 [Oenanthe virgata] >QTC08359.1 ribosomal protein S12 [Cori...	[more]

BLAST of Lsi01G018970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07675.1	8.5e-61	92.00	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	8.5e-61	92.00	Ribosomal protein S12/S23 family protein	[more]
ATCG00065.1	6.8e-34	57.72	ribosomal protein S12A	[more]
ATCG01230.1	6.8e-34	57.72	ribosomal protein S12B	[more]
ATCG00905.1	6.8e-34	57.72	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 69..84 score: 65.1 coord: 84..99 score: 83.94 coord: 100..119 score: 66.81 coord: 119..136 score: 81.02 coord: 136..152 score: 53.35 coord: 152..164 score: 64.0
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 54..165 e-value: 2.3E-31 score: 107.8
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 61..166
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 85..92
IPR005679	Ribosomal protein S12, bacterial-type	TIGRFAM	TIGR00981	TIGR00981	coord: 43..165 e-value: 2.1E-52 score: 174.2
IPR005679	Ribosomal protein S12, bacterial-type	CDD	cd03368	Ribosomal_S12	coord: 45..152 e-value: 8.45528E-54 score: 164.229
None	No IPR available	GENE3D	2.40.50.140		coord: 40..167 e-value: 3.2E-53 score: 180.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87
None	No IPR available	PANTHER	PTHR11652:SF54	RIBOSOMAL PROTEIN S12/S23-RELATED	coord: 61..166
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 44..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018970.1	Lsi01G018970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003735	structural constituent of ribosome