Lsi01G018960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G018960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC113729324
Locationchr01: 22159892 .. 22164827 (-)
RNA-Seq ExpressionLsi01G018960
SyntenyLsi01G018960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCTCTCATGGAGTCTACTACACTAGCCAAGAAAGAGTGTATTAGACTCCATTCGCCCGTGGAGGTGAGTGGAGGAAGAATCAAAAAAGAGAAAGGTATTGCAACTAATAAATAGTTGCTCGTTCATAAATTCAGTTGACCACTTGTTAGTCTTGCTACACTACACGACACGAGTGACGGGTGAAGTTGAAGCAGACACGGTCGACGTTCAGTCGACTTCACAAGTGATTCAACATACCATATGGAAATAATAAAAAAAGGAGAGAAGGGTCTCGCCCAGGTGGCTCCCGCAAGGTAACGACTTCAAACTCAAACAAAGAACGTTCTTCTCCAAGGCATGAGTCAAAGAAAATGCTGTATGTATCTAATGCAAGACCCGTCGATAAGCTAAGGCTACGACATGAAGGAAGGCGAAGAAGTCCATTCGATTTTTGTTTCGCCTTCTCCCGTGCACCCGCCTTAGGAAAAGCTGCTTCGCTCCTCTCCCAACCTTTCCATTCCCTTTTCTATCGAAACTGAGAAGTAGGGCGAGCAAAAAAGAGGGAATTCTCTAATCCGATAGCCTTACAACAAAGAAGCTTGCTTAACGCACTAGCTTTGAGTTCCGACTTAAAAGCTCTTAGAAGTTCAAAACCAAAAGACAAAGTGCCAAAGCTGTATCCAAGTTGTAATAAAAGAAAGAAGAAAGAATAAGAATCCAACTAGAGAACTGAAGCTTCCCAAGACCACTTACGGTAAGGTGCGCTGGGCACGAATCCAGTAGCCAGTTTCCCTAGCAGGCGGGTCACACGTACTATAACAATCATTTGAAAAAAGAAAATAAACAAACAACAGACTAACTATACTAGCAAACCAAGAAAGCACAAACCTTACGTCATAGGGGCAAGTTGAAGAAGGGTTTGGGTTCCGAGGAGCTACCAGAGCAGGGGGTTTTAACTGCCCTGATAGCCGGGAAGAGCCTTAGACTTCCGCCGGAGTTCCCGCAGGGACAGGCCAAACCAACCCAGGAACTTCACCAGCAAACTCCACACGTCGACCCAGGAGGTGAGGTCTCCCAACGCTGCCGATTGGATTGGATGCCCTGAGTCATTTGGTTTTGACGCGTGTCTGTTAGTGAATCACAGCTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTCTTCGAACCTTTTGGTATGTATTGCCCCCTAACTATAGATCAGATCCACCGGACGAGAAACTCAATTCCGCACTGCTGCGGAGTCGTCGGACTTATCCACCAAGGGATTCCTTGAATTTCTGTGGATTGCGTTGGAGGAAATCTACCAAAGCTAGGCAGATAGATGGACTCCTTCCCCGCTGCTAAGGGAGAGCAAGAAAAAAAATAAAATGATTGTTTTTTAATCAGCGCCCCCTTTCTTTTGGGTATGCAGGTACTAAGAGTCCTCTCACTACCAACCAGCAGACATCATCTGGCTGGGTCTTGCCGGTATCAACAACAAGAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATAATAGATTAATAAAAAATTAACTAATATCTCTCACATATGAATCTAATTCATATATTAATATTTGAATCTCATTCAAATATATTTCTCTCATATATTATAAAGTTCAATTTTGCATCTCATACTACAGACCGTTTAGATTATCTCTTAAACACGATCCACTTGTATGTCTCTACATACGTGTTTAAGTTACTACTAATAACATAGGATCTTAGTTTATTAGTTTTCAGGTTAATGAAACTAAAAGTCAAATAAAATAACAATTGTATTATTAAATAAATAATTTGGTTTACAAAATACAATACAAAACAACGAGATTTAGGGCATCAACCCAACATAAATATCCCGTAAGTGCGCTAATGAGACTTATGTCTTTCATGCTTGAGAATATGAGTTCGATATTATCATAGTTGTTGATGCAGCTGTTAGGTTTTATGTCCTAAAACTCATAGTTTGTAAACACTAACATGCATTCTATTGTCAATAAAGTTGTTATCGAGGTTATTCAATAAACTTGTTATTGAATATGTGAATTGTTGTTAACGTAACTCGAAATCCAATAAACAAAGAACCCATGGCTATAACATTATACTTGAACTATATGTGGAAACATAAAAGTGGATCAAGTTTGAGTAAATAGTCAAAATGGTATATACTATAAGGATTAGGCTGGGTACCTTATCCTAGGGATACTATTGAGTGCGACCCACTTTGTATTTGATACGACTAATGTGATCCTGAATCGTTCATGCGGAAACATGTGAGTGGGGGCATTCTTTGTAATAAGTTTGCATAAGATCAGACCACGAAATAGTCACTATTACTTTATAACGTCGTTTATTGTTAACACTGACTATTTCAATTAGATGACCTAGGTAACTCGATCTTAATCTTGAGCTAACTATGAACTCTTGTTTATTCAAGATTATTCTTAGATCTTCATGGGTGAGAGTGGCCCGAGTTTGTCGACTCAATATGCCTCCCATTTCAGGGGTAGGACAGAGTAGGTAGCTAGTGACGTAGTCATGCAAGACAAAATTCACTCATACTCGACTTAGGGATAATAGATTGGTTGTTCCCTTAAGTACTGACTCCGGGTCTTGAACAAGGGGCCCCACCCTTTCATGGCCCGAGAGGGACTCGATTTAATGATAGGATCACAAACCAGTTGTTCATTGGAGGATCAGTGGGACTTAAGGAACAAGATGTATTCACAGGGGTAAAATAATAATTTTGATTACGAACAACCTGTGAAGGATCAATTTACTAATTGTGGTTATATCAAGTGGACAAAAATATATCTACTGTGAGGAGAGTGCAGCTACAGGATTTAGTGGAGTGTCCCGTTAGTTAACGAATGTTGGTTAACTAGGTTAAAGAGTTTGGTTGGTTAATCTTGGATCGTTAGAGCTCATGATCTGTAGGTCCATTAGGTCTCTCTACTAGCTCACAAACGGATAAAATCTTAGATAGTATGGTGAATGAGTTTGAAATGTTCAAATTAGGTTTCGAAAATAAACGTTGGACATATGCGATATATCTAAATGTATCGACATTTAATTACGAATTAAAGAAAACAAATAGAGTTAAGAATAATGTTTAAATATGATTTAAATATTAAAAATATGAATAGGGATTCATATTTGAAAAATCATTTTTCAGAAAATCGGGTTAGTGGAAAAATAATATTATTTTAATATTAGGCATTAAACTAATATTATTTATTTATTTAAAATTAATTTTATATAAAATTAATTAATTATTTAATTTTATTTAAATTTTGAAAATTCAAATTGAAAAACTCAATTTTGAAAAAAATGGATTTCTCCACTCACAAGCAAGAAGCTTGGTGTAATCTTAAAATTTTGCCACTAATCCCGCTCCAAATCTTGATCAATTTGTTGCCATTTTGGTGTTAACTCTTAATGCATGTTCTTCTTCTATAAAACATGAAGATTTGGGCAGAGATTGGAGTTGAGATTTATGAAAATTAAGGGTTAATTTTGCAGAAATCTCTCTAGAACTCCTTCACTCACCTTCTTCATTTTTCTCAAAAATTGACCACCAAATTAGATCCCACCATCCAATCTAAGGCCAGAAATAGTAGAAAAAACTCTTGTGGTAGGCTACAAACAAGTCGTGTTCAATTTCGTGGAGAAATCAAGAAAAATTTGATCTTCAAAAGTTGTAATTTCTAATTCTTATTTTTCCCCTGTTTTGCATGAATGTTTATCCTCAAAATTGAGCATGTTAGAGTGTAACTCATCCTAATTCGCTTCCATTGCCTGTTCATATATCTATTAGCGGCTAGGTTGCGACTCTGTTGATGCATCGTCATAGTCCATTGATATAGACTCTAAGTTTCGTTGAAGCAGACTTGTCCATTTGTATGTCATGTCACGAGTATATGATAATCATGGTTATCTAAATTTGCATGATGTATTAGAGAGTATATCATGAGATTACATATGAACGAGGTTTGATATAACCTTAGTTTGTTGATGCAACTAAGGATATATTTTGGTTGATGCTATCCACATTGACTAGATATCCCATATCCCATAAGTGCGTTGATGCGGCTGGTGCATATACCATGTTGAAGCATGAATAAAGGTTGATGCAGCTAGATTGTGACTCTGTTGATGCATTGTCATTGGTCAATTGATACCTTAGTTTGTTGATGCAACTAAGGATGGATTTTGGTTGATGAATATTCACATTGACTAAATATCCCGTAAGTACAGTATTGATGCAGCTTATCCCTTTCATGCTTGAGTATGAGTTAGATATTATCATAGTTGTTGATGTGGCAAGGGTGCGACTCTGTTGATGCATTGTCGTAGGTCAATTGATATCGGCTCTAGGTTTCATCGAAGCAGATTTATTCATTTGTATGTTATGTCACGAGTATATGATAATAAAGGTCCTATAGTTTGCATGATGCAGTAA

mRNA sequence

ATGACACCTCTCATGGAGTCTACTACACTAGCCAAGAAAGAGTGTATTAGACTCCATTCGCCCGTGGAGGCGGGTCACACGGGCAAGTTGAAGAAGGGTTTGGGTTCCGAGGAGCTACCAGAGCAGGGGGTTTTAACTGCCCTGATAGCCGGGAAGAGCCTTAGACTTCCGCCGGAGTTCCCGCAGGGACAGGCCAAACCAACCCAGGAACTTCACCAGCAAACTCCACACGTCGACCCAGGAGGTGAGCGCCCCCTTTCTTTTGGGTATGCAGGTACTAAGAGTCCTCTCACTACCAACCAGCAGACATCATCTGGCTGGGTCTTGCCGGGTGCGACTCTGTTGATGCATTGTCGTAGGTCAATTGATATCGGCTCTAGGTTTCATCGAAGCAGATTTATTCATTTGTATGTTATGTCACGAGTATATGATAATAAAGGTCCTATAGTTTGCATGATGCAGTAA

Coding sequence (CDS)

ATGACACCTCTCATGGAGTCTACTACACTAGCCAAGAAAGAGTGTATTAGACTCCATTCGCCCGTGGAGGCGGGTCACACGGGCAAGTTGAAGAAGGGTTTGGGTTCCGAGGAGCTACCAGAGCAGGGGGTTTTAACTGCCCTGATAGCCGGGAAGAGCCTTAGACTTCCGCCGGAGTTCCCGCAGGGACAGGCCAAACCAACCCAGGAACTTCACCAGCAAACTCCACACGTCGACCCAGGAGGTGAGCGCCCCCTTTCTTTTGGGTATGCAGGTACTAAGAGTCCTCTCACTACCAACCAGCAGACATCATCTGGCTGGGTCTTGCCGGGTGCGACTCTGTTGATGCATTGTCGTAGGTCAATTGATATCGGCTCTAGGTTTCATCGAAGCAGATTTATTCATTTGTATGTTATGTCACGAGTATATGATAATAAAGGTCCTATAGTTTGCATGATGCAGTAA

Protein sequence

MTPLMESTTLAKKECIRLHSPVEAGHTGKLKKGLGSEELPEQGVLTALIAGKSLRLPPEFPQGQAKPTQELHQQTPHVDPGGERPLSFGYAGTKSPLTTNQQTSSGWVLPGATLLMHCRRSIDIGSRFHRSRFIHLYVMSRVYDNKGPIVCMMQ
Homology
[Close]
BLAST of Lsi01G018960 vs. ExPASy TrEMBL
Match: A0A1S3XDI4 (uncharacterized protein LOC107763905 OS=Nicotiana tabacum OX=4097 GN=LOC107763905 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 87  SFGYAGTKSPLTTNQQTSSGWVLPG 112
           SFGYAGTKSPLTTNQQTSSGWVLPG
Sbjct: 55  SFGYAGTKSPLTTNQQTSSGWVLPG 79

[Close]
BLAST of Lsi01G018960 vs. ExPASy TrEMBL
Match: A0A6P6W266 (LOW QUALITY PROTEIN: uncharacterized protein LOC113729324 OS=Coffea arabica OX=13443 GN=LOC113729324 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-04
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 83  ERPLSFGYAGTKSPLTTNQQTSSGWVLPG 112
           +RP  FGYAGTKSPLTTNQQTSSGWVLPG
Sbjct: 224 QRP-PFGYAGTKSPLTTNQQTSSGWVLPG 251

[Close]
BLAST of Lsi01G018960 vs. ExPASy TrEMBL
Match: A0A443Q424 (Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02718100 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 88  FGYAGTKSPLTTNQQTSSGWVLPG 112
           FGYAGTKSPLTTNQQTSSGWVLPG
Sbjct: 40  FGYAGTKSPLTTNQQTSSGWVLPG 63

[Close]
BLAST of Lsi01G018960 vs. NCBI nr
Match: KAG8362767.1 (hypothetical protein BUALT_BualtUnG0041600 [Buddleja alternifolia])

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-11
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 20 SPVEAGHTGKLKKGLGSEELPEQGVLTALIAGKSLRLPPEFPQGQAKPTQELHQQT 76
          +P +  +T KLKKGLGSEELPEQGVLTALIAGKSLRLPPEFPQG      +LH  T
Sbjct: 23 TPPKLHYTDKLKKGLGSEELPEQGVLTALIAGKSLRLPPEFPQGGRNFVSKLHTST 78

[Close]
BLAST of Lsi01G018960 vs. NCBI nr
Match: XP_031095155.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC115999446 [Ipomoea triloba])

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 87  SFGYAGTKSPLTTNQQTSSGWVLPG 112
           SFGYAGTKSPLTTNQQTSSGWVLPG
Sbjct: 35  SFGYAGTKSPLTTNQQTSSGWVLPG 59

[Close]
BLAST of Lsi01G018960 vs. NCBI nr
Match: XP_016437897.1 (PREDICTED: uncharacterized protein LOC107763905 [Nicotiana tabacum] >XP_019246377.1 PREDICTED: uncharacterized protein LOC109226027 [Nicotiana attenuata])

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 87  SFGYAGTKSPLTTNQQTSSGWVLPG 112
           SFGYAGTKSPLTTNQQTSSGWVLPG
Sbjct: 55  SFGYAGTKSPLTTNQQTSSGWVLPG 79

[Close]
BLAST of Lsi01G018960 vs. NCBI nr
Match: XP_020546984.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC105179429 [Sesamum indicum])

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-04
Identity = 34/61 (55.74%), Postives = 36/61 (59.02%), Query Frame = 0 

Query: 88  FGYAGTKSPLTTNQQTSSGWVLPGATLLMHCRRSIDIGSRFHRSRFIHLYVMSRVYDNKG 147
           FGYAGTKSPLTTNQQTSSGWVLPG        RS   G+   R RF    V+SR      
Sbjct: 60  FGYAGTKSPLTTNQQTSSGWVLPG--------RSEQEGT--PRRRFYSWAVVSRSRGRSA 110

Query: 148 P 149
           P
Sbjct: 120 P 110

[Close]
BLAST of Lsi01G018960 vs. NCBI nr
Match: XP_027184067.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC113782373 [Coffea eugenioides])

HSP 1 Score: 55.5 bits (132), Expect = 4.8e-04
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 83  ERPLSFGYAGTKSPLTTNQQTSSGWVLPG 112
           +RP  FGYAGTKSPLTTNQQTSSGWVLPG
Sbjct: 107 QRP-PFGYAGTKSPLTTNQQTSSGWVLPG 134

[Close]
BLAST of Lsi01G018960 vs. TAIR 10
Match: AT2G07599.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01040.1). )

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-06
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 88  FGYAGTKSPLTTNQQTSSGWVLPG 112
           F YA TKSPLTTNQQTSSGWVLPG
Sbjct: 129 FEYADTKSPLTTNQQTSSGWVLPG 152

[Close]
BLAST of Lsi01G018960 vs. TAIR 10
Match: AT2G07599.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01040.1). )

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-06
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 88  FGYAGTKSPLTTNQQTSSGWVLPG 112
           F YA TKSPLTTNQQTSSGWVLPG
Sbjct: 214 FEYADTKSPLTTNQQTSSGWVLPG 237

The following BLAST results are available for this feature:
BLAST of Lsi01G018960 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G018960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3XDI41.1e-04100.00uncharacterized protein LOC107763905 OS=Nicotiana tabacum OX=4097 GN=LOC10776390... [more]
A0A6P6W2662.3e-0489.66LOW QUALITY PROTEIN: uncharacterized protein LOC113729324 OS=Coffea arabica OX=1... [more]
A0A443Q4243.1e-04100.00Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_... [more]
BLAST of Lsi01G018960 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG8362767.13.1e-1171.43hypothetical protein BUALT_BualtUnG0041600 [Buddleja alternifolia][more]
XP_031095155.12.2e-04100.00LOW QUALITY PROTEIN: uncharacterized protein LOC115999446 [Ipomoea triloba][more]
XP_016437897.12.2e-04100.00PREDICTED: uncharacterized protein LOC107763905 [Nicotiana tabacum] >XP_01924637... [more]
XP_020546984.12.2e-0455.74LOW QUALITY PROTEIN: uncharacterized protein LOC105179429 [Sesamum indicum][more]
XP_027184067.14.8e-0489.66LOW QUALITY PROTEIN: uncharacterized protein LOC113782373 [Coffea eugenioides][more]
BLAST of Lsi01G018960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07599.13.2e-0691.67unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G07599.23.2e-0691.67unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G018960.1Lsi01G018960.1mRNA