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Lsi01G018920 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAATTGAAAATGAGTTTAAGTAGCGCCCAAATTTTCGCATTTGAAATTTGCCCAAAATTTCGCCTTCTCTCCAAGCAGCTCCATCTTCTTCCCTCTCATTTTTCAACTGCGCGTCTCACAGAAGAGAGCGCCTCCCACCAATCCACCGCCATTTCGTTTGGTCAAAGGTTAAACAAATACTCCATTGAAGCTCACTGGAATCTCACAGTATGAATGAATTTCCATCTTCCTTTTCTCCATTTCTTTTTTACTTTTTGAAGAATGTAGAAATTAAATGTAGGTTTTCTTGTAAGTTTTTGTTTTAACTCAAAGATTCTGAGTTCTTGTTACTGTAGACTTAGATTAGGGTTTCTCGCTTTCTTCTTCTTCGAAATGATTGTTTTCTTGCTTCTTCCTTTTGAAGTTCCATAATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCTGAGGTATTTGCTCGTCGGAGATCGGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCAGATTGCACGCACTACAACGACTACTGCTCAACAAAGACCTACGAATCCCAGCCCTGGTGGAGGTGGTCCGAATCTGAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGTAATAGACATCTTTACAGATCTCCAGTTTTGAACCGCGAGAATACGGCGGCTGGGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTATTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACCGCAGTTGTGAGGGTAAATGGCTAATTCCCCTGTTACTTTGATGTTGTTCTGCTAAATCTTTCCAAATCTTTCAATTTTGTGGTTTATTGTGCATTTGATTCATATTGTTTATAGCAAACCTATTCACATTGTTATCACATATGGTCTCTGGTATGCATATACGTACTCTAATAGCTGTAAGATTTGTTCTCTGATACAGTATATTTGTTTGGATTTGTTCTAATTTTAATTTGCTTGATCTTTGGAAAACCTCCTTTTGATTTTTCTGGTGTAGTTGTTGTGATTCTTGTTTCTGTTTTTCAGTTGGTAAGCATTTGTTTTGATTTGATTTTAGTTGAATTGATTTTTAACCGAAAATGTTATTGCATATGTTTAATCCTTTTTTGTGAATCCTTAGATTGGATCACTTTCCTTTCTCTTTAAGTTAATTAATCAATAAATTTTCAGCGTTTTTAAGCTATGTACTACCTACCTGTTTGTCTAAAAAGTAGATTCTTTTGGTTTGTAACATCCATGTCCAATGATTTCATATGAAACATCAACAGTCTGGATAATGAGATCCTGTCCACCATTAATTAAAGTTAACATAATTCGTCTCCTTTTTAGTTTTTATATTCATTGTTTTCTTGGATTCCAATCGGTTTTTAGGCTTCATTTTTACCCGTTATTAGAACTACTTTTTGGTGGGCTCAATATGCTTCGGCTGGTTACTAGGATGTGCTGACTAGGTAGTCCAATCAACATTTTGGGCCTATGTTAAAGCTGTGATTTGGATGTCAAATTGCTGATTTATTAGCCAATAAGTTTTTAAAAAACTATGTTTGAAAAGCATATTAACACTCATATTATCGTTACTTGTGGGACATGTGTAGAATTCTCATTAAGCATGCGTTGACACTTGTACATTATTTGACCTGACGTTTCAATGTATTAGTATTAATTAATTTATTTTGTTTGAAAAGTTTAATGGACGAGAAAATATATAATTTGAGTGAAAAGTATCATATTTAATTTTTCAAGCATCTAGGTGCATATATATTATTGACCTTAAATTTGTTAAGATTATAGAATCCTTTTTTAAATAACGACTCTTTCTCAGATATTCTCATACACTAAAGCAAACTATTATGAGGAAAAATCTTTGTAATGAAATAAAATAGTTACATGATTTTTCAAAATTGTAGAAAGTAAATGTGCCATTGCTTTTTCTGTCCTCATTTTTCAGAAAATATCATATCACGTTATAATTCATCATGTCTTCTCTATGTCACGTGTTTGTGTCTATGGACCATTCATCTAAAATCTTTGTTACTTTTTAAGTTGATTCACTGATAATTTTGCTGTCAATGGGGAAACATTCCCACTATCTTATCACTTCTCTGCCGATTTCATTTGAGAGCTGTCTTTTACAAGTCTTCTTTGAGCTATGTTCTTTCACTAATCAAAGCGAATTCTCTTTAAAACATTGCATCTGGGCTCAGGTTTTTGTCTTTCCAAGAGTTCCAACTTATTTAGCTTTATCCTGCATGTGGGCATTTGGATATTTAGCTACTGCTCCATGTCATTCAATATCACCTGTGTTTTTCCTAGTTTTTCATTTGAGGCAATTGAAAGGTCATTTAGTTAATATGGAGAGAATGTTATTGTTTTAATCAGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTACAGCGTATCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGCAAAGTTCCAAAGATTCTTCTTGGAATCGCAAATCAGAACACGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTGCAGAAATTGAAAAGAACTCCCAGTGCTAAGAAAGCAGAGAGGGAGAAAAGGGTTCGAACTTTAATGTCGTTTCGTTGATTCATTTCAACACAAACACATTCCCTGAAATGTTTTGGCAATCATCTGACTTAAACTCAGGAACTTCAGAGGATCAATCATCTGCTGATGATTACTTTGGTCAAGAGCGCCCATTGATCAGAGGGAGGGAGAAAGAGATCCTCATCTTCTGATGAGATCTCATCTCTGGTGGAGGATTATGTGTTAGTTTCCTTTAAAAAATGAATCCTTTTCATTTACAAAAACCATCTTTGGATTTAGATGTTTAGTAAGCATTCTACAATATATAGGGCTTATTTTGTTGTTGTAGGGTCTGCCTTTGTTTGTTTACTACAGATTATAGATATAGCTAAAGCAGGCCTTTTCTGGGCGGTGGAAATGATGTAAATAGAAATTTTATTCACTCTACAACTTGAAATTTTTGCCTTTCGAAATCTTATTAGATGCACATTTTTGATTGGCTGCCATTATCATCAGGTTTGAAGTGATCTCTACAATCAGGTGAGAATGAAATCCCTT AAAAAATTGAAAATGAGTTTAAGTAGCGCCCAAATTTTCGCATTTGAAATTTGCCCAAAATTTCGCCTTCTCTCCAAGCAGCTCCATCTTCTTCCCTCTCATTTTTCAACTGCGCGTCTCACAGAAGAGAGCGCCTCCCACCAATCCACCGCCATTTCGTTTGGTCAAAGGTTAAACAAATACTCCATTGAAGCTCACTGGAATCTCACAGTTTTCTTTTCCATAATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCTGAGGTATTTGCTCGTCGGAGATCGGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCAGATTGCACGCACTACAACGACTACTGCTCAACAAAGACCTACGAATCCCAGCCCTGGTGGAGGTGGTCCGAATCTGAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGTAATAGACATCTTTACAGATCTCCAGTTTTGAACCGCGAGAATACGGCGGCTGGGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTATTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACCGCAGTTGTGAGGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTACAGCGTATCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGCAAAGTTCCAAAGATTCTTCTTGGAATCGCAAATCAGAACACGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTGCAGAAATTGAAAAGAACTCCCAGTGCTAAGAAAGCAGAGAGGGAGAAAAGGGTTCGAACTTTAATGTCGTTTCGTTGATTCATTTCAACACAAACACATTCCCTGAAATGTTTTGGCAATCATCTGACTTAAACTCAGGAACTTCAGAGGATCAATCATCTGCTGATGATTACTTTGGTCAAGAGCGCCCATTGATCAGAGGGAGGGAGAAAGAGATCCTCATCTTCTGATGAGATCTCATCTCTGGTGGAGGATTATGTGTTAGTTTCCTTTAAAAAATGAATCCTTTTCATTTACAAAAACCATCTTTGGATTTAGATGTTTAGTAAGCATTCTACAATATATAGGGCTTATTTTGTTGTTGTAGGGTCTGCCTTTGTTTGTTTACTACAGATTATAGATATAGCTAAAGCAGGCCTTTTCTGGGCGGTGGAAATGATGTAAATAGAAATTTTATTCACTCTACAACTTGAAATTTTTGCCTTTCGAAATCTTATTAGATGCACATTTTTGATTGGCTGCCATTATCATCAGGTTTGAAGTGATCTCTACAATCAGGTGAGAATGAAATCCCTT ATGAGTTTAAGTAGCGCCCAAATTTTCGCATTTGAAATTTGCCCAAAATTTCGCCTTCTCTCCAAGCAGCTCCATCTTCTTCCCTCTCATTTTTCAACTGCGCGTCTCACAGAAGAGAGCGCCTCCCACCAATCCACCGCCATTTCGTTTGGTCAAAGGTTAAACAAATACTCCATTGAAGCTCACTGGAATCTCACAGTTTTCTTTTCCATAATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCTGAGGTATTTGCTCGTCGGAGATCGGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCAGATTGCACGCACTACAACGACTACTGCTCAACAAAGACCTACGAATCCCAGCCCTGGTGGAGGTGGTCCGAATCTGAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGTAATAGACATCTTTACAGATCTCCAGTTTTGAACCGCGAGAATACGGCGGCTGGGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTATTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACCGCAGTTGTGAGGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTACAGCGTATCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGCAAAGTTCCAAAGATTCTTCTTGGAATCGCAAATCAGAACACGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTGCAGAAATTGAAAAGAACTCCCAGTGCTAAGAAAGCAGAGAGGGAGAAAAGGGTTCGAACTTTAATGTCGTTTCGTTGA MSLSSAQIFAFEICPKFRLLSKQLHLLPSHFSTARLTEESASHQSTAISFGQRLNKYSIEAHWNLTVFFSIMSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTQIARTTTTTAQQRPTNPSPGGGGPNLRRTFGSPISGGIGRNRHLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKPTVGKVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREKRVRTLMSFR Homology
BLAST of Lsi01G018920 vs. ExPASy Swiss-Prot
Match: O48533 (Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 8.7e-51 Identity = 136/262 (51.91%), Postives = 165/262 (62.98%), Query Frame = 0
BLAST of Lsi01G018920 vs. ExPASy Swiss-Prot
Match: Q9M2R1 (Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 8.8e-35 Identity = 121/268 (45.15%), Postives = 147/268 (54.85%), Query Frame = 0
BLAST of Lsi01G018920 vs. ExPASy TrEMBL
Match: A0A0A0KY99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1) HSP 1 Score: 473.0 bits (1216), Expect = 9.8e-130 Identity = 264/325 (81.23%), Postives = 277/325 (85.23%), Query Frame = 0
BLAST of Lsi01G018920 vs. ExPASy TrEMBL
Match: A0A5D3BM43 (Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00330 PE=4 SV=1) HSP 1 Score: 426.8 bits (1096), Expect = 8.0e-116 Identity = 229/249 (91.97%), Postives = 238/249 (95.58%), Query Frame = 0
BLAST of Lsi01G018920 vs. ExPASy TrEMBL
Match: A0A1S3CDA1 (protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1) HSP 1 Score: 426.8 bits (1096), Expect = 8.0e-116 Identity = 229/249 (91.97%), Postives = 238/249 (95.58%), Query Frame = 0
BLAST of Lsi01G018920 vs. ExPASy TrEMBL
Match: A0A6J1HRM8 (protein POLYCHOME OS=Cucurbita maxima OX=3661 GN=LOC111466091 PE=4 SV=1) HSP 1 Score: 382.9 bits (982), Expect = 1.3e-102 Identity = 213/254 (83.86%), Postives = 229/254 (90.16%), Query Frame = 0
BLAST of Lsi01G018920 vs. ExPASy TrEMBL
Match: A0A6J1EBD1 (protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111432471 PE=4 SV=1) HSP 1 Score: 382.9 bits (982), Expect = 1.3e-102 Identity = 213/253 (84.19%), Postives = 229/253 (90.51%), Query Frame = 0
BLAST of Lsi01G018920 vs. NCBI nr
Match: KGN53824.1 (hypothetical protein Csa_015343 [Cucumis sativus]) HSP 1 Score: 473.0 bits (1216), Expect = 2.0e-129 Identity = 264/325 (81.23%), Postives = 277/325 (85.23%), Query Frame = 0
BLAST of Lsi01G018920 vs. NCBI nr
Match: XP_038881398.1 (protein POLYCHOME [Benincasa hispida]) HSP 1 Score: 443.4 bits (1139), Expect = 1.7e-120 Identity = 238/249 (95.58%), Postives = 240/249 (96.39%), Query Frame = 0
BLAST of Lsi01G018920 vs. NCBI nr
Match: XP_008460799.1 (PREDICTED: protein POLYCHOME [Cucumis melo] >KAA0053198.1 protein POLYCHOME [Cucumis melo var. makuwa] >TYK00145.1 protein POLYCHOME [Cucumis melo var. makuwa]) HSP 1 Score: 426.8 bits (1096), Expect = 1.7e-115 Identity = 229/249 (91.97%), Postives = 238/249 (95.58%), Query Frame = 0
BLAST of Lsi01G018920 vs. NCBI nr
Match: XP_004150162.1 (protein POLYCHOME [Cucumis sativus]) HSP 1 Score: 424.5 bits (1090), Expect = 8.2e-115 Identity = 228/249 (91.57%), Postives = 237/249 (95.18%), Query Frame = 0
BLAST of Lsi01G018920 vs. NCBI nr
Match: KAG6595661.1 (Ras-related protein RABA4d, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 386.0 bits (990), Expect = 3.2e-103 Identity = 215/256 (83.98%), Postives = 231/256 (90.23%), Query Frame = 0
BLAST of Lsi01G018920 vs. TAIR 10
Match: AT2G42260.1 (uv-b-insensitive 4 ) HSP 1 Score: 202.2 bits (513), Expect = 6.2e-52 Identity = 136/262 (51.91%), Postives = 165/262 (62.98%), Query Frame = 0
BLAST of Lsi01G018920 vs. TAIR 10
Match: AT3G57860.1 (UV-B-insensitive 4-like ) HSP 1 Score: 149.1 bits (375), Expect = 6.2e-36 Identity = 121/268 (45.15%), Postives = 147/268 (54.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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