Lsi01G018810 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G018810
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 4-like
Location	chr01: 21473921 .. 21476663 (+)
RNA-Seq Expression	Lsi01G018810
Synteny	Lsi01G018810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCACAAAATGTGGAAGGTTTAAGTGCTATTTTTACCCTTCAACTTTCATGCTTATTTTAATTTAGTTCATGAATTTCCAGTCATTCTACCGTAACTATTAAGCTTAGTCCTTTTCCAAAAAAAAAAAAAAAAACCCCTTAATGTAGCCATATGTGTAGTTCATTTACTAGATGAGTGTGTGTATGTTTGAAGTCACATGTTAAGTAATTCAGCTATCAAGTTTCAAAATAAGATCAAATTTAGGCTAAATAGAAAGTCAATAGTAGAGACTAATGTATTCTTTTTACAAAATAATTGGGGGACTAAAACAGAATGTTTGAAGAATGAAAGACACACTAAAAAGCCCTTCTTTATTTTAAAAACTGAATTTCTAACTTCTAATTAAAGACTTTTAGATTTTTGCTTCCTTTCTTCTTGTTTGAGTTTTAGAAACTGGAGAGATTTATATCTAATTGAATATGGTTAAAATTAAGTTGATGTTGCATTAGTGTTTAAGATTTTTACTATTTTGTTGATGTTGAATGTTGAAAGTTGACCTATCTTATGGCTGGAAATTTATTTTATTGCTTCTTTGACTATTTGATTTGAGTATATATCTTTGTCTTGTTTTTGCTATTCTATTCTTGTCTTATTTTTGCGTTGATTTGGGTTTGCTACTCTATTTAATTTTATTTTTCATAGGATGACTTCAACGTTTTCTAGTCAAACTCTTCATTCAGTTGCATGTGATAATCCTAATCCTTGTGTCACTAGTCCAATAAGAATGTTAGGAAAAAGAAAACCTACTAAAGCAACATCATTGGCTTGGGAACATTTTATTAAGGTAGAAGGATATGATCCTGAACATCCTAGGGCTGCTTGTAAGTACTGTGGGACTACATATGCATGTGATTCCAAGAGAAATGGTACAAAAAATCTAAAAAGACACTTAGAGAAATGTAAGAAATATATAAACAAGTCAGTTGAAGGTGAGGGAGATTCTGAACGTAGTTTGATGAATAATTCGTTCTCTCAAGAAAATTGTAGAACGATGCTTGCTTGTATGTTCATATTAGATGAATTGCCTTTTAAGTTTGTAGAAAGTGAAGGATTTCAAAAATTTTGTCAAGCATTAAATCCGAAGTTTGTAATTCCATCAAGAGTGATTGTTGCAAAGGATTGTTTTCAAATATACATGAGGGAGAAAAAGAGCTTGAAGAGTGCATTAACTCGAAGTAGGCAAAGAGTTTGTTTAACAACTGATACATGGACTTCCGTGCAGAATATTAATTATATGGTCATAACGGCTCATTTCATTGATGGTGATTGGAACTTGCACAAAAGAATTATAAACTTTTGTCAAATAGCTAATCATAAAGGAGATACGATAGGTAGAACAATTGAAAAATGCTTAGAAAGTTGGGGTATTGATAGGCTTTTCACTGTCACTGTTGATAATGCGAGTTCAAATGATCGAGCCATTGCATATTTGGTTAAAAAGTTTAGAGGCAGAAATGGGTTAGTGTTGGATGGTGAATTTATCCATGTTAGATGTTGTGCACATATCCTTAATTTAATTGTTAGTGATGCTTTAAAAGATTTGTACGTGTCTATCATTCGAATTAGAAATGATGTGAAGTATGTTAGGTCGTCTCCTGCAAGATTGCAAATATTTAAAGATTTTGCTAAAGAAAATAGGATGTCAACAAAAAGGTGTCTTATGATGGATGTTCCAACACGATGGAATTCTACTTTCACTATGTTGGATGGAGCAATTAAGTGCCAAAAGACATTTGAAAGATTGGAGGAGCATGACCCAAGATATTTGCCAAAAGACGATATTCCTACTATAAAAAATTGGGATAACGCTAAAGTGTTTGTAGAGTTCTTGAAGACTTTCTCAGACGTTACATTAAAGTTTTCTGCATCTTTTTCTGTGACTTCAAACATATTTTTTCATGAAATGTGTTTGGTCCAAAGAAATAATTCGTGAATATTCATTGTACGAGAATGCACTATTGAGTCAAATGACATCAAGCATGTAGACAAAGTTCAAATATTGGGGTATAACTACAAGTGAGAAGACAAATTTATTATTGTATATCGTTGTAGTTCTTGACTCTAGATATAAGTTGACTTATGTGAGTTATTGTTTTAATGAGTTTTTGGAGGAAGAAAGTGCAAAAAAATGGACAAATAAGGTTGAAGAAGCATTTCGCCGTTTGTGTGATGATTATTATATAAGAATGTTAATGTCAAAAGAACAATATTCACAAGCGCAATCATATACACCTATCGAAGAATCTAGTTGTCAAAGTGAGAGTGAAGTTCCATCTATCTCATCTAATGCATCGAGTGGAACTGGATCCTATAGGGTACGTGCTGCTGTTCATGATAGATTTAAACAAAGTAATAAAAAGGATCCAGATGATGGGAAAACAGAGGTTGCTCGTTATTTAGATGAGGCTCGTATAGAAGATGAAAATTTAAATCTTCTAAATTGGTGGAAATTGAATTCTTCTCGATTTAAGATTATTAGCCAAGTGGCTGGGGACATCAACAGTATTCCTATATCTACAGTGCCATCTGAATCAGCTTTTAACACTGGTGGACGGGTGTTAGATTCTTTTCGAAGTTCACTAACTCCTCAAACTGCAGAGGCACTTATTTGTGCTCAAAATTGGCTTCAATCTAAACCTTTGGATGATATGAGCGAAGAAATTGATGGAGCTGAAGAAATTGATGAATGTAACAAATAA

mRNA sequence

ATGGTTCATGAATTTCCAGTCATTCTACCGATGACTTCAACGTTTTCTAGTCAAACTCTTCATTCAGTTGCATGTGATAATCCTAATCCTTGTGTCACTAGTCCAATAAGAATGTTAGGAAAAAGAAAACCTACTAAAGCAACATCATTGGCTTGGGAACATTTTATTAAGGTAGAAGGATATGATCCTGAACATCCTAGGGCTGCTTGTAAGTACTGTGGGACTACATATGCATGTGATTCCAAGAGAAATGTTCCATCTATCTCATCTAATGCATCGAGTGGAACTGGATCCTATAGGGTACGTGCTGCTGTTCATGATAGATTTAAACAAAGTAATAAAAAGGATCCAGATGATGGGAAAACAGAGGTTGCTCGTTATTTAGATGAGGCTCGTATAGAAGATGAAAATTTAAATCTTCTAAATTGGTGGAAATTGAATTCTTCTCGATTTAAGATTATTAGCCAAGTGGCTGGGGACATCAACAGTATTCCTATATCTACAGTGCCATCTGAATCAGCTTTTAACACTGGTGGACGGGTGTTAGATTCTTTTCGAAGTTCACTAACTCCTCAAACTGCAGAGGCACTTATTTGTGCTCAAAATTGGCTTCAATCTAAACCTTTGGATGATATGAGCGAAGAAATTGATGGAGCTGAAGAAATTGATGAATGTAACAAATAA

Coding sequence (CDS)

ATGGTTCATGAATTTCCAGTCATTCTACCGATGACTTCAACGTTTTCTAGTCAAACTCTTCATTCAGTTGCATGTGATAATCCTAATCCTTGTGTCACTAGTCCAATAAGAATGTTAGGAAAAAGAAAACCTACTAAAGCAACATCATTGGCTTGGGAACATTTTATTAAGGTAGAAGGATATGATCCTGAACATCCTAGGGCTGCTTGTAAGTACTGTGGGACTACATATGCATGTGATTCCAAGAGAAATGTTCCATCTATCTCATCTAATGCATCGAGTGGAACTGGATCCTATAGGGTACGTGCTGCTGTTCATGATAGATTTAAACAAAGTAATAAAAAGGATCCAGATGATGGGAAAACAGAGGTTGCTCGTTATTTAGATGAGGCTCGTATAGAAGATGAAAATTTAAATCTTCTAAATTGGTGGAAATTGAATTCTTCTCGATTTAAGATTATTAGCCAAGTGGCTGGGGACATCAACAGTATTCCTATATCTACAGTGCCATCTGAATCAGCTTTTAACACTGGTGGACGGGTGTTAGATTCTTTTCGAAGTTCACTAACTCCTCAAACTGCAGAGGCACTTATTTGTGCTCAAAATTGGCTTCAATCTAAACCTTTGGATGATATGAGCGAAGAAATTGATGGAGCTGAAGAAATTGATGAATGTAACAAATAA

Protein sequence

MVHEFPVILPMTSTFSSQTLHSVACDNPNPCVTSPIRMLGKRKPTKATSLAWEHFIKVEGYDPEHPRAACKYCGTTYACDSKRNVPSISSNASSGTGSYRVRAAVHDRFKQSNKKDPDDGKTEVARYLDEARIEDENLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVLDSFRSSLTPQTAEALICAQNWLQSKPLDDMSEEIDGAEEIDECNK

Homology

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BLAST of Lsi01G018810 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-15
Identity = 44/94 (46.81%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 121 KTEVARYLDEA---RIEDENLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAF-- 180
           K+E+ +YLDE+   RI++   ++LNWWKLN+ +F  +S++A DI +IP+S V S ++   
Sbjct: 615 KSELEQYLDESLTPRIQE--FDILNWWKLNTLKFPTLSRMARDILAIPMSMVSSGNSIFS 674

Query: 181 -NTGGRVLDSFRSSLTPQTAEALICAQNWLQSKP 209
             TG R+LD +RSSL P+  EAL+CA++WLQ  P
Sbjct: 675 AGTGTRMLDDYRSSLRPEIVEALVCAKDWLQYLP 706

[Close]

BLAST of Lsi01G018810 vs. ExPASy Swiss-Prot
Match: Q75HY5 (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.4e-15
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 122 TEVARYLDEA---RIEDENLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSE----SA 181
           +E+ +YL+EA   RI+D    +L WWKLN+ +F  +S++A D+ +IP+S V S     SA
Sbjct: 646 SELEQYLEEALMPRIQD--FEILEWWKLNTIKFPTLSKMARDVLAIPMSMVSSGSSIFSA 705

Query: 182 FNTGGRVLDSFRSSLTPQTAEALICAQNWLQSKP 209
             TG ++LD +RSSL P+T EAL CA++WLQ  P
Sbjct: 706 TATGSQMLDDYRSSLRPETVEALFCAKDWLQYPP 737

[Close]

BLAST of Lsi01G018810 vs. ExPASy Swiss-Prot
Match: B9FJG3 (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-14
Identity = 42/94 (44.68%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 121 KTEVARYLDEA---RIEDENLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAF-- 180
           K+E+ +YLDE+   RI++   ++LNWWKLN+ ++  +S++A DI +IP+S V S ++   
Sbjct: 615 KSELEQYLDESLTPRIQE--FDILNWWKLNTLKYPTLSKMARDILAIPMSMVSSGNSIFS 674

Query: 181 -NTGGRVLDSFRSSLTPQTAEALICAQNWLQSKP 209
             TG R+LD +RSS  P+  EAL+CA++WLQ  P
Sbjct: 675 AGTGTRMLDDYRSSSRPEIVEALVCAKDWLQYLP 706

[Close]

BLAST of Lsi01G018810 vs. ExPASy Swiss-Prot
Match: Q9M2N5 (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-12
Identity = 34/85 (40.00%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 121 KTEVARYLDEARI-EDENLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGG 180
           K+E+ +YLDE  +   +  ++L+WWK N  ++  +S++A DI SIP+S    +  F+   
Sbjct: 590 KSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEP 649

Query: 181 RVLDSFRSSLTPQTAEALICAQNWL 205
           R +D +++SL P+T EALICA+ WL
Sbjct: 650 REMDEYKTSLRPETVEALICAREWL 674

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BLAST of Lsi01G018810 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 4.3e-12
Identity = 35/92 (38.04%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 115 KDPDDGKT-EVARYLDEARIEDE-NLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSE 174
           KD D  ++ E+ +Y+ E  ++     ++L+WW+   + + I++Q+A D+ +I +STV SE
Sbjct: 660 KDYDQVESNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASE 719

Query: 175 SAFNTGGRVLDSFRSSLTPQTAEALICAQNWL 205
           SAF+ GGRV+D +R+ L  +  EALIC ++W+
Sbjct: 720 SAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 751

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BLAST of Lsi01G018810 vs. ExPASy TrEMBL
Match: A0A5A7SW63 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00810 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 7.8e-57
Identity = 145/277 (52.35%), Postives = 162/277 (58.48%), Query Frame = 0


Query: 9   LPMTSTFSSQTLHSVACDNPNPCVTSPIRMLGKRKPTKATSLAWEHFIKVEGYDPEHPRA 68
           L MTS FS     + +C +P         +LGKRK  K     WEHFIKVEG DP++PRA
Sbjct: 283 LRMTS-FSVDETSNQSCYSP---------VLGKRKLVKPPPSVWEHFIKVEGCDPKYPRA 342

Query: 69  ACKYCGTTYACDSKRN---------------VPSISSNASSGTGS--------------- 128
           ACK+CGT+YACDSKRN               V  +  N     GS               
Sbjct: 343 ACKHCGTSYACDSKRNCTTNLKRHLEKCKMYVNPLEDNVEGDGGSETSLMAASFTQENCR 402

Query: 129 -YRVRAAVHD--------------------------RFKQSNKKD-PDDGKTEVARYLDE 188
               R  + D                          +FK  N     DD KTEV RYLDE
Sbjct: 403 KMLARMVILDELPFKLFTVTVDNASSNDVAIAYLVKKFKGRNGLVLDDDAKTEVTRYLDE 462

Query: 189 ARIE---DENLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVLDSFRS 225
           ARI+   DE LNLL WWK+NSSRFKIISQVA DI  IPISTVPS+SAF+TGGRVLDSFRS
Sbjct: 463 ARIDCIGDEYLNLLTWWKVNSSRFKIISQVARDIYGIPISTVPSKSAFSTGGRVLDSFRS 522

[Close]

BLAST of Lsi01G018810 vs. ExPASy TrEMBL
Match: A0A6J1DYU8 (uncharacterized protein LOC111025523 OS=Momordica charantia OX=3673 GN=LOC111025523 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 114/146 (78.08%), Postives = 127/146 (86.99%), Query Frame = 0


Query: 79  CDSKRNVPSISSNASSGTGSYRVRAAVHDRFKQSNKKDPDDGKTEVARYLDEARIEDENL 138
           C S+  +PSISS+A    G Y+VRA VHD +KQS KKD DDGKTEV RYLDEA  ED++ 
Sbjct: 22  CQSE--IPSISSSAFGEIGIYKVRAVVHDIYKQSKKKDSDDGKTEVTRYLDEACAEDDDF 81

Query: 139 NLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVLDSFRSSLTPQTAEALI 198
           +LLNWWK+NSSR+KIISQVA DI +IPISTVPSESAF+TGGRVLDSFRSSLTPQT +ALI
Sbjct: 82  DLLNWWKINSSRYKIISQVARDIYNIPISTVPSESAFSTGGRVLDSFRSSLTPQTTDALI 141

Query: 199 CAQNWLQSKPLDDMSEEIDGAEEIDE 225
           CAQNWLQSKPLDDMSEEIDGAEEIDE
Sbjct: 142 CAQNWLQSKPLDDMSEEIDGAEEIDE 165

[Close]

BLAST of Lsi01G018810 vs. ExPASy TrEMBL
Match: A0A5D3B9J0 (Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00270 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 6.2e-54
Identity = 115/144 (79.86%), Postives = 126/144 (87.50%), Query Frame = 0


Query: 81  SKRNVPSISSNASSGTGSYRVRAAVHDRFKQSNKKDPDDGKTEVARYLDEARIEDENLNL 140
           S+  +PSISS     +GSY+  AAVHDRFKQ+NK   DD KTEVARYLDEARIEDE L+L
Sbjct: 8   SQSEIPSISS-----SGSYKAHAAVHDRFKQNNKTCLDDAKTEVARYLDEARIEDEYLDL 67

Query: 141 LNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVLDSFRSSLTPQTAEALICA 200
           LNWWK+NSSRFKIISQVA DI S PISTVP ESAFNTGGRVLDSF++SLTPQTAEALICA
Sbjct: 68  LNWWKVNSSRFKIISQVARDIYSNPISTVPFESAFNTGGRVLDSFQNSLTPQTAEALICA 127

Query: 201 QNWLQSKPLDDMSEEIDGAEEIDE 225
           QNW+QSKPLDDM+EEIDGAEEIDE
Sbjct: 128 QNWIQSKPLDDMTEEIDGAEEIDE 146

[Close]

BLAST of Lsi01G018810 vs. ExPASy TrEMBL
Match: A0A5D3BZ93 (Zinc finger BED domain-containing protein RICESLEEPER 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00220 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 2.4e-53
Identity = 114/148 (77.03%), Postives = 125/148 (84.46%), Query Frame = 0


Query: 77  YACDSKRNVPSISSNASSGTGSYRVRAAVHDRFKQSNKKDPDDGKTEVARYLDEARIEDE 136
           +   S+  +PSISS     +GSY+ R  VH+ FKQSNK   DD KTEV RYLDE RIEDE
Sbjct: 18  FGFQSQSGIPSISS-----SGSYKARVVVHNIFKQSNKTCLDDAKTEVTRYLDETRIEDE 77

Query: 137 NLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVLDSFRSSLTPQTAEA 196
            L+LLNWWK+NSSRFKIISQVA DI SIPISTVPSESAF+TGGRVLDSFRSSLTPQTAEA
Sbjct: 78  YLDLLNWWKVNSSRFKIISQVARDIYSIPISTVPSESAFSTGGRVLDSFRSSLTPQTAEA 137

Query: 197 LICAQNWLQSKPLDDMSEEIDGAEEIDE 225
           LICAQNW+QSKPLDDM+EEIDGAEEIDE
Sbjct: 138 LICAQNWIQSKPLDDMTEEIDGAEEIDE 160

[Close]

BLAST of Lsi01G018810 vs. ExPASy TrEMBL
Match: E5GB32 (Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 3.1e-53
Identity = 116/153 (75.82%), Postives = 128/153 (83.66%), Query Frame = 0


Query: 77  YACDSKRNVPSISSNASSGTGSYRVRAAVHDRFKQSNKKDPDDGKTEVARYLDEARIE-- 136
           +   S+  +PSISS     +GSY+ RA VHDRFKQSNK   DD KTEV RYLDEARI+  
Sbjct: 193 FGFQSQSEIPSISS-----SGSYKARATVHDRFKQSNKTCLDDAKTEVTRYLDEARIDCM 252

Query: 137 -DENLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVLDSFRSSLTPQT 196
            DE L+LL WWK+N+SRFKIISQVA DI SIPISTVPSESAF+TGGRVLDSFRSSLTPQT
Sbjct: 253 GDEYLDLLTWWKVNASRFKIISQVARDIYSIPISTVPSESAFSTGGRVLDSFRSSLTPQT 312

Query: 197 AEALICAQNWLQSKPLDDMSEEIDGAEEIDECN 227
           AEALICAQNW+QSKPLDDM+EEIDGAEEIDE N
Sbjct: 313 AEALICAQNWIQSKPLDDMTEEIDGAEEIDEGN 340

[Close]

BLAST of Lsi01G018810 vs. NCBI nr
Match: KAA0034838.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-56
Identity = 145/277 (52.35%), Postives = 162/277 (58.48%), Query Frame = 0


Query: 9   LPMTSTFSSQTLHSVACDNPNPCVTSPIRMLGKRKPTKATSLAWEHFIKVEGYDPEHPRA 68
           L MTS FS     + +C +P         +LGKRK  K     WEHFIKVEG DP++PRA
Sbjct: 283 LRMTS-FSVDETSNQSCYSP---------VLGKRKLVKPPPSVWEHFIKVEGCDPKYPRA 342

Query: 69  ACKYCGTTYACDSKRN---------------VPSISSNASSGTGS--------------- 128
           ACK+CGT+YACDSKRN               V  +  N     GS               
Sbjct: 343 ACKHCGTSYACDSKRNCTTNLKRHLEKCKMYVNPLEDNVEGDGGSETSLMAASFTQENCR 402

Query: 129 -YRVRAAVHD--------------------------RFKQSNKKD-PDDGKTEVARYLDE 188
               R  + D                          +FK  N     DD KTEV RYLDE
Sbjct: 403 KMLARMVILDELPFKLFTVTVDNASSNDVAIAYLVKKFKGRNGLVLDDDAKTEVTRYLDE 462

Query: 189 ARIE---DENLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVLDSFRS 225
           ARI+   DE LNLL WWK+NSSRFKIISQVA DI  IPISTVPS+SAF+TGGRVLDSFRS
Sbjct: 463 ARIDCIGDEYLNLLTWWKVNSSRFKIISQVARDIYGIPISTVPSKSAFSTGGRVLDSFRS 522

[Close]

BLAST of Lsi01G018810 vs. NCBI nr
Match: XP_022159082.1 (uncharacterized protein LOC111025523 [Momordica charantia])

HSP 1 Score: 222.6 bits (566), Expect = 3.4e-54
Identity = 114/146 (78.08%), Postives = 127/146 (86.99%), Query Frame = 0


Query: 79  CDSKRNVPSISSNASSGTGSYRVRAAVHDRFKQSNKKDPDDGKTEVARYLDEARIEDENL 138
           C S+  +PSISS+A    G Y+VRA VHD +KQS KKD DDGKTEV RYLDEA  ED++ 
Sbjct: 22  CQSE--IPSISSSAFGEIGIYKVRAVVHDIYKQSKKKDSDDGKTEVTRYLDEACAEDDDF 81

Query: 139 NLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVLDSFRSSLTPQTAEALI 198
           +LLNWWK+NSSR+KIISQVA DI +IPISTVPSESAF+TGGRVLDSFRSSLTPQT +ALI
Sbjct: 82  DLLNWWKINSSRYKIISQVARDIYNIPISTVPSESAFSTGGRVLDSFRSSLTPQTTDALI 141

Query: 199 CAQNWLQSKPLDDMSEEIDGAEEIDE 225
           CAQNWLQSKPLDDMSEEIDGAEEIDE
Sbjct: 142 CAQNWLQSKPLDDMSEEIDGAEEIDE 165

[Close]

BLAST of Lsi01G018810 vs. NCBI nr
Match: KAA0039652.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa] >TYJ95536.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-53
Identity = 115/144 (79.86%), Postives = 126/144 (87.50%), Query Frame = 0


Query: 81  SKRNVPSISSNASSGTGSYRVRAAVHDRFKQSNKKDPDDGKTEVARYLDEARIEDENLNL 140
           S+  +PSISS     +GSY+  AAVHDRFKQ+NK   DD KTEVARYLDEARIEDE L+L
Sbjct: 8   SQSEIPSISS-----SGSYKAHAAVHDRFKQNNKTCLDDAKTEVARYLDEARIEDEYLDL 67

Query: 141 LNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVLDSFRSSLTPQTAEALICA 200
           LNWWK+NSSRFKIISQVA DI S PISTVP ESAFNTGGRVLDSF++SLTPQTAEALICA
Sbjct: 68  LNWWKVNSSRFKIISQVARDIYSNPISTVPFESAFNTGGRVLDSFQNSLTPQTAEALICA 127

Query: 201 QNWLQSKPLDDMSEEIDGAEEIDE 225
           QNW+QSKPLDDM+EEIDGAEEIDE
Sbjct: 128 QNWIQSKPLDDMTEEIDGAEEIDE 146

[Close]

BLAST of Lsi01G018810 vs. NCBI nr
Match: TYK04294.1 (zinc finger BED domain-containing protein RICESLEEPER 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 218.8 bits (556), Expect = 4.9e-53
Identity = 114/148 (77.03%), Postives = 125/148 (84.46%), Query Frame = 0


Query: 77  YACDSKRNVPSISSNASSGTGSYRVRAAVHDRFKQSNKKDPDDGKTEVARYLDEARIEDE 136
           +   S+  +PSISS     +GSY+ R  VH+ FKQSNK   DD KTEV RYLDE RIEDE
Sbjct: 18  FGFQSQSGIPSISS-----SGSYKARVVVHNIFKQSNKTCLDDAKTEVTRYLDETRIEDE 77

Query: 137 NLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVLDSFRSSLTPQTAEA 196
            L+LLNWWK+NSSRFKIISQVA DI SIPISTVPSESAF+TGGRVLDSFRSSLTPQTAEA
Sbjct: 78  YLDLLNWWKVNSSRFKIISQVARDIYSIPISTVPSESAFSTGGRVLDSFRSSLTPQTAEA 137

Query: 197 LICAQNWLQSKPLDDMSEEIDGAEEIDE 225
           LICAQNW+QSKPLDDM+EEIDGAEEIDE
Sbjct: 138 LICAQNWIQSKPLDDMTEEIDGAEEIDE 160

[Close]

BLAST of Lsi01G018810 vs. NCBI nr
Match: ACX85638.1 (putative transposase [Cucumis melo])

HSP 1 Score: 218.4 bits (555), Expect = 6.4e-53
Identity = 116/153 (75.82%), Postives = 128/153 (83.66%), Query Frame = 0


Query: 77  YACDSKRNVPSISSNASSGTGSYRVRAAVHDRFKQSNKKDPDDGKTEVARYLDEARIE-- 136
           +   S+  +PSISS     +GSY+ RA VHDRFKQSNK   DD KTEV RYLDEARI+  
Sbjct: 526 FGFQSQSEIPSISS-----SGSYKARATVHDRFKQSNKTCLDDAKTEVTRYLDEARIDCM 585

Query: 137 -DENLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVLDSFRSSLTPQT 196
            DE L+LL WWK+N+SRFKIISQVA DI SIPISTVPSESAF+TGGRVLDSFRSSLTPQT
Sbjct: 586 GDEYLDLLTWWKVNASRFKIISQVARDIYSIPISTVPSESAFSTGGRVLDSFRSSLTPQT 645

Query: 197 AEALICAQNWLQSKPLDDMSEEIDGAEEIDECN 227
           AEALICAQNW+QSKPLDDM+EEIDGAEEIDE N
Sbjct: 646 AEALICAQNWIQSKPLDDMTEEIDGAEEIDEGN 673

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BLAST of Lsi01G018810 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-13
Identity = 34/85 (40.00%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 121 KTEVARYLDEARI-EDENLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGG 180
           K+E+ +YLDE  +   +  ++L+WWK N  ++  +S++A DI SIP+S    +  F+   
Sbjct: 590 KSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEP 649

Query: 181 RVLDSFRSSLTPQTAEALICAQNWL 205
           R +D +++SL P+T EALICA+ WL
Sbjct: 650 REMDEYKTSLRPETVEALICAREWL 674

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BLAST of Lsi01G018810 vs. TAIR 10
Match: AT1G18560.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 50.1 bits (118), Expect = 2.8e-06
Identity = 22/84 (26.19%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 123 EVARYLDEARIEDENLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVL 182
           E+ +YL E+ I     ++L+WWK+NS R+  +S +A D  ++  ++   E  F   G  +
Sbjct: 569 ELTQYLSES-IVPMQTDVLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEI 628

Query: 183 DSFRSSLTPQTAEALICAQNWLQS 207
           D  +  +   + +++IC ++W+++
Sbjct: 629 DKQKYCMPHDSTQSVICIRSWIEA 651

The following BLAST results are available for this feature:

BLAST of Lsi01G018810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AVI0	1.4e-15	46.81	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j...	[more]
Q75HY5	9.4e-15	46.81	Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. j...	[more]
B9FJG3	1.6e-14	44.68	Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. j...	[more]
Q9M2N5	1.9e-12	40.00	Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=...	[more]
P08770	4.3e-12	38.04	Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2	[more]

BLAST of Lsi01G018810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SW63	7.8e-57	52.35	Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213...	[more]
A0A6J1DYU8	1.6e-54	78.08	uncharacterized protein LOC111025523 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5D3B9J0	6.2e-54	79.86	Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucum...	[more]
A0A5D3BZ93	2.4e-53	77.03	Zinc finger BED domain-containing protein RICESLEEPER 4-like OS=Cucumis melo var...	[more]
E5GB32	3.1e-53	75.82	Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Lsi01G018810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034838.1	1.6e-56	52.35	putative transposase [Cucumis melo var. makuwa]	[more]
XP_022159082.1	3.4e-54	78.08	uncharacterized protein LOC111025523 [Momordica charantia]	[more]
KAA0039652.1	1.3e-53	79.86	zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis...	[more]
TYK04294.1	4.9e-53	77.03	zinc finger BED domain-containing protein RICESLEEPER 4-like [Cucumis melo var. ...	[more]
ACX85638.1	6.4e-53	75.82	putative transposase [Cucumis melo]	[more]

Pages

BLAST of Lsi01G018810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42170.1	1.4e-13	40.00	BED zinc finger ;hAT family dimerisation domain	[more]
AT1G18560.1	2.8e-06	26.19	BED zinc finger ;hAT family dimerisation domain	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00614	bed5	coord: 46..109 e-value: 0.0022 score: 27.2
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 119..212
None	No IPR available	PANTHER	PTHR23272:SF15	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1	coord: 119..212
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 123..204 e-value: 4.1E-25 score: 87.4
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 111..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018810.1	Lsi01G018810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004177	aminopeptidase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0008270	zinc ion binding