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Lsi01G018810 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCACAAAATGTGGAAGGTTTAAGTGCTATTTTTACCCTTCAACTTTCATGCTTATTTTAATTTAGTTCATGAATTTCCAGTCATTCTACCGTAACTATTAAGCTTAGTCCTTTTCCAAAAAAAAAAAAAAAAACCCCTTAATGTAGCCATATGTGTAGTTCATTTACTAGATGAGTGTGTGTATGTTTGAAGTCACATGTTAAGTAATTCAGCTATCAAGTTTCAAAATAAGATCAAATTTAGGCTAAATAGAAAGTCAATAGTAGAGACTAATGTATTCTTTTTACAAAATAATTGGGGGACTAAAACAGAATGTTTGAAGAATGAAAGACACACTAAAAAGCCCTTCTTTATTTTAAAAACTGAATTTCTAACTTCTAATTAAAGACTTTTAGATTTTTGCTTCCTTTCTTCTTGTTTGAGTTTTAGAAACTGGAGAGATTTATATCTAATTGAATATGGTTAAAATTAAGTTGATGTTGCATTAGTGTTTAAGATTTTTACTATTTTGTTGATGTTGAATGTTGAAAGTTGACCTATCTTATGGCTGGAAATTTATTTTATTGCTTCTTTGACTATTTGATTTGAGTATATATCTTTGTCTTGTTTTTGCTATTCTATTCTTGTCTTATTTTTGCGTTGATTTGGGTTTGCTACTCTATTTAATTTTATTTTTCATAGGATGACTTCAACGTTTTCTAGTCAAACTCTTCATTCAGTTGCATGTGATAATCCTAATCCTTGTGTCACTAGTCCAATAAGAATGTTAGGAAAAAGAAAACCTACTAAAGCAACATCATTGGCTTGGGAACATTTTATTAAGGTAGAAGGATATGATCCTGAACATCCTAGGGCTGCTTGTAAGTACTGTGGGACTACATATGCATGTGATTCCAAGAGAAATGGTACAAAAAATCTAAAAAGACACTTAGAGAAATGTAAGAAATATATAAACAAGTCAGTTGAAGGTGAGGGAGATTCTGAACGTAGTTTGATGAATAATTCGTTCTCTCAAGAAAATTGTAGAACGATGCTTGCTTGTATGTTCATATTAGATGAATTGCCTTTTAAGTTTGTAGAAAGTGAAGGATTTCAAAAATTTTGTCAAGCATTAAATCCGAAGTTTGTAATTCCATCAAGAGTGATTGTTGCAAAGGATTGTTTTCAAATATACATGAGGGAGAAAAAGAGCTTGAAGAGTGCATTAACTCGAAGTAGGCAAAGAGTTTGTTTAACAACTGATACATGGACTTCCGTGCAGAATATTAATTATATGGTCATAACGGCTCATTTCATTGATGGTGATTGGAACTTGCACAAAAGAATTATAAACTTTTGTCAAATAGCTAATCATAAAGGAGATACGATAGGTAGAACAATTGAAAAATGCTTAGAAAGTTGGGGTATTGATAGGCTTTTCACTGTCACTGTTGATAATGCGAGTTCAAATGATCGAGCCATTGCATATTTGGTTAAAAAGTTTAGAGGCAGAAATGGGTTAGTGTTGGATGGTGAATTTATCCATGTTAGATGTTGTGCACATATCCTTAATTTAATTGTTAGTGATGCTTTAAAAGATTTGTACGTGTCTATCATTCGAATTAGAAATGATGTGAAGTATGTTAGGTCGTCTCCTGCAAGATTGCAAATATTTAAAGATTTTGCTAAAGAAAATAGGATGTCAACAAAAAGGTGTCTTATGATGGATGTTCCAACACGATGGAATTCTACTTTCACTATGTTGGATGGAGCAATTAAGTGCCAAAAGACATTTGAAAGATTGGAGGAGCATGACCCAAGATATTTGCCAAAAGACGATATTCCTACTATAAAAAATTGGGATAACGCTAAAGTGTTTGTAGAGTTCTTGAAGACTTTCTCAGACGTTACATTAAAGTTTTCTGCATCTTTTTCTGTGACTTCAAACATATTTTTTCATGAAATGTGTTTGGTCCAAAGAAATAATTCGTGAATATTCATTGTACGAGAATGCACTATTGAGTCAAATGACATCAAGCATGTAGACAAAGTTCAAATATTGGGGTATAACTACAAGTGAGAAGACAAATTTATTATTGTATATCGTTGTAGTTCTTGACTCTAGATATAAGTTGACTTATGTGAGTTATTGTTTTAATGAGTTTTTGGAGGAAGAAAGTGCAAAAAAATGGACAAATAAGGTTGAAGAAGCATTTCGCCGTTTGTGTGATGATTATTATATAAGAATGTTAATGTCAAAAGAACAATATTCACAAGCGCAATCATATACACCTATCGAAGAATCTAGTTGTCAAAGTGAGAGTGAAGTTCCATCTATCTCATCTAATGCATCGAGTGGAACTGGATCCTATAGGGTACGTGCTGCTGTTCATGATAGATTTAAACAAAGTAATAAAAAGGATCCAGATGATGGGAAAACAGAGGTTGCTCGTTATTTAGATGAGGCTCGTATAGAAGATGAAAATTTAAATCTTCTAAATTGGTGGAAATTGAATTCTTCTCGATTTAAGATTATTAGCCAAGTGGCTGGGGACATCAACAGTATTCCTATATCTACAGTGCCATCTGAATCAGCTTTTAACACTGGTGGACGGGTGTTAGATTCTTTTCGAAGTTCACTAACTCCTCAAACTGCAGAGGCACTTATTTGTGCTCAAAATTGGCTTCAATCTAAACCTTTGGATGATATGAGCGAAGAAATTGATGGAGCTGAAGAAATTGATGAATGTAACAAATAA ATGGTTCATGAATTTCCAGTCATTCTACCGATGACTTCAACGTTTTCTAGTCAAACTCTTCATTCAGTTGCATGTGATAATCCTAATCCTTGTGTCACTAGTCCAATAAGAATGTTAGGAAAAAGAAAACCTACTAAAGCAACATCATTGGCTTGGGAACATTTTATTAAGGTAGAAGGATATGATCCTGAACATCCTAGGGCTGCTTGTAAGTACTGTGGGACTACATATGCATGTGATTCCAAGAGAAATGTTCCATCTATCTCATCTAATGCATCGAGTGGAACTGGATCCTATAGGGTACGTGCTGCTGTTCATGATAGATTTAAACAAAGTAATAAAAAGGATCCAGATGATGGGAAAACAGAGGTTGCTCGTTATTTAGATGAGGCTCGTATAGAAGATGAAAATTTAAATCTTCTAAATTGGTGGAAATTGAATTCTTCTCGATTTAAGATTATTAGCCAAGTGGCTGGGGACATCAACAGTATTCCTATATCTACAGTGCCATCTGAATCAGCTTTTAACACTGGTGGACGGGTGTTAGATTCTTTTCGAAGTTCACTAACTCCTCAAACTGCAGAGGCACTTATTTGTGCTCAAAATTGGCTTCAATCTAAACCTTTGGATGATATGAGCGAAGAAATTGATGGAGCTGAAGAAATTGATGAATGTAACAAATAA ATGGTTCATGAATTTCCAGTCATTCTACCGATGACTTCAACGTTTTCTAGTCAAACTCTTCATTCAGTTGCATGTGATAATCCTAATCCTTGTGTCACTAGTCCAATAAGAATGTTAGGAAAAAGAAAACCTACTAAAGCAACATCATTGGCTTGGGAACATTTTATTAAGGTAGAAGGATATGATCCTGAACATCCTAGGGCTGCTTGTAAGTACTGTGGGACTACATATGCATGTGATTCCAAGAGAAATGTTCCATCTATCTCATCTAATGCATCGAGTGGAACTGGATCCTATAGGGTACGTGCTGCTGTTCATGATAGATTTAAACAAAGTAATAAAAAGGATCCAGATGATGGGAAAACAGAGGTTGCTCGTTATTTAGATGAGGCTCGTATAGAAGATGAAAATTTAAATCTTCTAAATTGGTGGAAATTGAATTCTTCTCGATTTAAGATTATTAGCCAAGTGGCTGGGGACATCAACAGTATTCCTATATCTACAGTGCCATCTGAATCAGCTTTTAACACTGGTGGACGGGTGTTAGATTCTTTTCGAAGTTCACTAACTCCTCAAACTGCAGAGGCACTTATTTGTGCTCAAAATTGGCTTCAATCTAAACCTTTGGATGATATGAGCGAAGAAATTGATGGAGCTGAAGAAATTGATGAATGTAACAAATAA MVHEFPVILPMTSTFSSQTLHSVACDNPNPCVTSPIRMLGKRKPTKATSLAWEHFIKVEGYDPEHPRAACKYCGTTYACDSKRNVPSISSNASSGTGSYRVRAAVHDRFKQSNKKDPDDGKTEVARYLDEARIEDENLNLLNWWKLNSSRFKIISQVAGDINSIPISTVPSESAFNTGGRVLDSFRSSLTPQTAEALICAQNWLQSKPLDDMSEEIDGAEEIDECNK Homology
BLAST of Lsi01G018810 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 1.4e-15 Identity = 44/94 (46.81%), Postives = 67/94 (71.28%), Query Frame = 0
BLAST of Lsi01G018810 vs. ExPASy Swiss-Prot
Match: Q75HY5 (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 9.4e-15 Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 0
BLAST of Lsi01G018810 vs. ExPASy Swiss-Prot
Match: B9FJG3 (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.6e-14 Identity = 42/94 (44.68%), Postives = 66/94 (70.21%), Query Frame = 0
BLAST of Lsi01G018810 vs. ExPASy Swiss-Prot
Match: Q9M2N5 (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.9e-12 Identity = 34/85 (40.00%), Postives = 56/85 (65.88%), Query Frame = 0
BLAST of Lsi01G018810 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2) HSP 1 Score: 73.2 bits (178), Expect = 4.3e-12 Identity = 35/92 (38.04%), Postives = 62/92 (67.39%), Query Frame = 0
BLAST of Lsi01G018810 vs. ExPASy TrEMBL
Match: A0A5A7SW63 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00810 PE=4 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 7.8e-57 Identity = 145/277 (52.35%), Postives = 162/277 (58.48%), Query Frame = 0
BLAST of Lsi01G018810 vs. ExPASy TrEMBL
Match: A0A6J1DYU8 (uncharacterized protein LOC111025523 OS=Momordica charantia OX=3673 GN=LOC111025523 PE=4 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54 Identity = 114/146 (78.08%), Postives = 127/146 (86.99%), Query Frame = 0
BLAST of Lsi01G018810 vs. ExPASy TrEMBL
Match: A0A5D3B9J0 (Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00270 PE=4 SV=1) HSP 1 Score: 220.7 bits (561), Expect = 6.2e-54 Identity = 115/144 (79.86%), Postives = 126/144 (87.50%), Query Frame = 0
BLAST of Lsi01G018810 vs. ExPASy TrEMBL
Match: A0A5D3BZ93 (Zinc finger BED domain-containing protein RICESLEEPER 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00220 PE=4 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 2.4e-53 Identity = 114/148 (77.03%), Postives = 125/148 (84.46%), Query Frame = 0
BLAST of Lsi01G018810 vs. ExPASy TrEMBL
Match: E5GB32 (Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 3.1e-53 Identity = 116/153 (75.82%), Postives = 128/153 (83.66%), Query Frame = 0
BLAST of Lsi01G018810 vs. NCBI nr
Match: KAA0034838.1 (putative transposase [Cucumis melo var. makuwa]) HSP 1 Score: 230.3 bits (586), Expect = 1.6e-56 Identity = 145/277 (52.35%), Postives = 162/277 (58.48%), Query Frame = 0
BLAST of Lsi01G018810 vs. NCBI nr
Match: XP_022159082.1 (uncharacterized protein LOC111025523 [Momordica charantia]) HSP 1 Score: 222.6 bits (566), Expect = 3.4e-54 Identity = 114/146 (78.08%), Postives = 127/146 (86.99%), Query Frame = 0
BLAST of Lsi01G018810 vs. NCBI nr
Match: KAA0039652.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa] >TYJ95536.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa]) HSP 1 Score: 220.7 bits (561), Expect = 1.3e-53 Identity = 115/144 (79.86%), Postives = 126/144 (87.50%), Query Frame = 0
BLAST of Lsi01G018810 vs. NCBI nr
Match: TYK04294.1 (zinc finger BED domain-containing protein RICESLEEPER 4-like [Cucumis melo var. makuwa]) HSP 1 Score: 218.8 bits (556), Expect = 4.9e-53 Identity = 114/148 (77.03%), Postives = 125/148 (84.46%), Query Frame = 0
BLAST of Lsi01G018810 vs. NCBI nr
Match: ACX85638.1 (putative transposase [Cucumis melo]) HSP 1 Score: 218.4 bits (555), Expect = 6.4e-53 Identity = 116/153 (75.82%), Postives = 128/153 (83.66%), Query Frame = 0
BLAST of Lsi01G018810 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain ) HSP 1 Score: 74.3 bits (181), Expect = 1.4e-13 Identity = 34/85 (40.00%), Postives = 56/85 (65.88%), Query Frame = 0
BLAST of Lsi01G018810 vs. TAIR 10
Match: AT1G18560.1 (BED zinc finger ;hAT family dimerisation domain ) HSP 1 Score: 50.1 bits (118), Expect = 2.8e-06 Identity = 22/84 (26.19%), Postives = 48/84 (57.14%), Query Frame = 0
The following BLAST results are available for this feature:
Pages
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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