Lsi01G018790 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G018790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L6
Location	chr01: 21418528 .. 21420841 (-)
RNA-Seq Expression	Lsi01G018790
Synteny	Lsi01G018790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATATTTGTCTACATCTCGGTAACCCTAGAGCTTCTCGGCGAGTGGAGGAGCGGAGACGACGCTGCCAAATTCTCAGAAATTCATCAATGGCTCCGAAGACAGCAAGAGTTAGCCGAAACCCCGATCTCATTCGAGGGGTTGGCAAATACTCAAGGTCGAAGATGTACCATAAGCGAGGTCTTTGGGCAATCAAGGCCAAAAACGGAGGTGTTTTCCCTCGCCACGATGCCAAGCCTAAGGCTGATGCTCCAGCAGAGAAGTCGCCCAAATTTTACCCTGCCGACGATGTCAAGAAACCACTTGTTAACAAGCGCAAAGCCAAGCCCACCAAACTTAGGTTCACCTCTCTCAATCTTCTTTCTTTTGATGTTATGTTTACTGCAGTGTCTTGGAACCCATATTGTTTGCTGTATTTTTAACTTTGGTATGGTTGGGAAATTGAGGAATTGGAGTAAGCTGTGGGATGAACGAAGTAAAACCTCTATATGAGTAGTTTTTTTTTGGTTATTTGGATAAGAATCAGTTTTGTTGATTACACAAGGAGAGGGCCAGAAGAAAATATAGTCCATGCTTTAGCTATGAAAAATGAGGATTTTTACACCTAATTGAGTGCCATGAAAGAGAGATTTATTTTACACTTGATTTGAGTTTTGGGTTTTGAATTGGGTGAAGTGAAGTAGTGATGTTGCTCATTTTCCAAATAATGAACATTGGGTCCAGGGGGTGTATTCATCTAGTTTTATTAATTTTATACTATTTGCAGGTCTAGCATTACTCCTGGAACCGTGCTTATCATTCTTACTGGAAGGTTCAAGGGAAAGAGGGTTGTGTTCTTAAAGCAACTTCCATCTGGGTTGCTTTTAGTGACTGGTGTGTCTTGACGATTTTCTCCAATTGCCTTTCTTTTATAAAATTTTGATTTACTATCATACCATGTTGGGAGAATTCTGTTCATGGGGATTGGCTTTTATTTTTCTACATTATTTGTGGACTTGTGTTAGATTTGCATTGGAAGTCTCATTTATGGTATCTTAGCATCATAACAATTGTTTGCCAGGTTTTCATGTTGTCTTAAATGTGTTGCCTGCATAACGGTTACCATTGAGAAGTTAGAAGTAGGATACTTTGGGTTTTACATTTTGGCAGTATTAATAGTTGAACCTCAAAACCAATTAATATTGAAGTGTCTCATGCCTTGCATTCTGCCCATATACCCTCCTAATGGTCTTTACCTACCACTGAAATGTCTCGTGCCTTCTATTCTGATTATATGCTCTGCGAATTATCTCTACATGCCACAAGTTTCTAAGCTTTATGTGCAAAATCTCCTACTGTTCTCTTCTGATGGTTGTGGGAAGGGGGAGTGGTTTGTAGATGTACATGTTTAGGAGAAAGGAAAGGATGCATATAAAGTAGGGATTAGCCAAGGTTTTATTAATTTGAAATCTGCAATTCTTGAACCTGCTAGGGATTATCTGAATTTAAAGTTTGTCATTTTAGGGCCATTCAAGTTCAATGGTGTTCCTTTGAGGCGTGTGAATCAGTCCTACGTGATTGCAACTTCCACTAAGGTGGACATTGCAGGAGTCAATGTGGAGAAGTTTGATGACAAATATTTCTCCAAGGAAGTTCAGAAGAAGAAAAAGAAGGGAGAAGGAGAATTTTTCGAGGCAGAGAAGGAGGTTTGTAGTTGTTTTTCATCCTTTGTTTTGTTCAAATACTTGAAAGATTTATCATTTCCTTGTCCTAATTTCTGGTTGCCATTGTTACATGTAGGAAAAAAGTGCACTCCCACAAGACAAAAAGGATGATCAGAAGGCCGTGGACTCAGCTCTGCTAAAGTCCATCGAGGCAGTCGCAGACTTAAAGACCTACTTAGCTGCAAGGTTTTCTCTAAAGGCAAGCATGAAACCGCACGAGCTTGTTTTCTAGATATTTTCTCTTTGGCGCTGATACTTTTCTTGTGGAATTATTTGATCCCTACAATCTTCTTGTTCATGTTTTGTTATGAGGATTCTAGATTTGAAATTATGTCTCGCAATGAATTTTGTAGTGAAGTCTTCATCAAATCCCGCGTTACGTAGCTTTCTTTGACTACTGATAGTGTTAAGATCTGTAATTTTTATTCAATTGCTGTCTGGTGAAATACTCAAGAGAGAAACATTTGAAAAGATAGATATGGGACTTCACATTTTGCATAGCTATGCTTGATTAGTTTGCAACGAGATACTGTGTGGGCAATGTATGCTTGAGTCTCAAATATTTGGGGTTTCTTTTTCAATTGGATTAGAAAATGATCTTTTCAAAGTCT

mRNA sequence

TATATATTTGTCTACATCTCGGTAACCCTAGAGCTTCTCGGCGAGTGGAGGAGCGGAGACGACGCTGCCAAATTCTCAGAAATTCATCAATGGCTCCGAAGACAGCAAGAGTTAGCCGAAACCCCGATCTCATTCGAGGGGTTGGCAAATACTCAAGGTCGAAGATGTACCATAAGCGAGGTCTTTGGGCAATCAAGGCCAAAAACGGAGGTGTTTTCCCTCGCCACGATGCCAAGCCTAAGGCTGATGCTCCAGCAGAGAAGTCGCCCAAATTTTACCCTGCCGACGATGTCAAGAAACCACTTGTTAACAAGCGCAAAGCCAAGCCCACCAAACTTAGGTCTAGCATTACTCCTGGAACCGTGCTTATCATTCTTACTGGAAGGTTCAAGGGAAAGAGGGTTGTGTTCTTAAAGCAACTTCCATCTGGGTTGCTTTTAGTGACTGGGCCATTCAAGTTCAATGGTGTTCCTTTGAGGCGTGTGAATCAGTCCTACGTGATTGCAACTTCCACTAAGGTGGACATTGCAGGAGTCAATGTGGAGAAGTTTGATGACAAATATTTCTCCAAGGAAGTTCAGAAGAAGAAAAAGAAGGGAGAAGGAGAATTTTTCGAGGCAGAGAAGGAGGAAAAAAGTGCACTCCCACAAGACAAAAAGGATGATCAGAAGGCCGTGGACTCAGCTCTGCTAAAGTCCATCGAGGCAGTCGCAGACTTAAAGACCTACTTAGCTGCAAGGTTTTCTCTAAAGGCAAGCATGAAACCGCACGAGCTTGTTTTCTAGATATTTTCTCTTTGGCGCTGATACTTTTCTTGTGGAATTATTTGATCCCTACAATCTTCTTGTTCATGTTTTGTTATGAGGATTCTAGATTTGAAATTATGTCTCGCAATGAATTTTGTAGTGAAGTCTTCATCAAATCCCGCGTTACGTAGCTTTCTTTGACTACTGATAGTGTTAAGATCTGTAATTTTTATTCAATTGCTGTCTGGTGAAATACTCAAGAGAGAAACATTTGAAAAGATAGATATGGGACTTCACATTTTGCATAGCTATGCTTGATTAGTTTGCAACGAGATACTGTGTGGGCAATGTATGCTTGAGTCTCAAATATTTGGGGTTTCTTTTTCAATTGGATTAGAAAATGATCTTTTCAAAGTCT

Coding sequence (CDS)

ATGGCTCCGAAGACAGCAAGAGTTAGCCGAAACCCCGATCTCATTCGAGGGGTTGGCAAATACTCAAGGTCGAAGATGTACCATAAGCGAGGTCTTTGGGCAATCAAGGCCAAAAACGGAGGTGTTTTCCCTCGCCACGATGCCAAGCCTAAGGCTGATGCTCCAGCAGAGAAGTCGCCCAAATTTTACCCTGCCGACGATGTCAAGAAACCACTTGTTAACAAGCGCAAAGCCAAGCCCACCAAACTTAGGTCTAGCATTACTCCTGGAACCGTGCTTATCATTCTTACTGGAAGGTTCAAGGGAAAGAGGGTTGTGTTCTTAAAGCAACTTCCATCTGGGTTGCTTTTAGTGACTGGGCCATTCAAGTTCAATGGTGTTCCTTTGAGGCGTGTGAATCAGTCCTACGTGATTGCAACTTCCACTAAGGTGGACATTGCAGGAGTCAATGTGGAGAAGTTTGATGACAAATATTTCTCCAAGGAAGTTCAGAAGAAGAAAAAGAAGGGAGAAGGAGAATTTTTCGAGGCAGAGAAGGAGGAAAAAAGTGCACTCCCACAAGACAAAAAGGATGATCAGAAGGCCGTGGACTCAGCTCTGCTAAAGTCCATCGAGGCAGTCGCAGACTTAAAGACCTACTTAGCTGCAAGGTTTTCTCTAAAGGCAAGCATGAAACCGCACGAGCTTGTTTTCTAG

Protein sequence

MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGPFKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF

Homology

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BLAST of Lsi01G018790 vs. ExPASy Swiss-Prot
Match: Q9C9C6 (60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 3.9e-101
Identity = 188/228 (82.46%), Postives = 205/228 (89.91%), Query Frame = 0


Query: 4   KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSPKFY 63
           +TA+V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K DAP EK PKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R AKP KLR+SITPGTVLIIL GRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 FNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
            NGVPLRRVNQ+YVI TSTKVDI+GV ++KFDDKYF K  +KKKKK EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
            +PQ KKDDQKAVD+AL+K+IEAV +LKTYL ARFSLK  MKPHELVF
Sbjct: 186 EIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Lsi01G018790 vs. ExPASy Swiss-Prot
Match: Q9FZ76 (60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 6.6e-101
Identity = 186/230 (80.87%), Postives = 205/230 (89.13%), Query Frame = 0


Query: 2   APKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSPK 61
           A +T +V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+PK DAP EK  K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGP 121
           FYPA+DVKKPLVN+RK KPTKL++SITPGTVLIIL GRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 122 FKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEE 181
           FK NGVPLRRVNQ+YVI TSTK+DI+GVN EKFDDKYF K  +KKKKK EGEFFEAEKEE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEE 183

Query: 182 KSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           K  +PQ+KK+DQK VD+AL+KSIEAV +LK YL ARFSL   MKPHELVF
Sbjct: 184 KKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

[Close]

BLAST of Lsi01G018790 vs. ExPASy Swiss-Prot
Match: Q9C9C5 (60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 6.6e-101
Identity = 188/228 (82.46%), Postives = 205/228 (89.91%), Query Frame = 0


Query: 4   KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSPKFY 63
           +T +V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K DAP EK PKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R AKPTKLR+SITPGTVLIIL GRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 FNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
            NGVPLRRVNQ+YVI TSTKVDI+GV ++KFDDKYF K  +KKKKK EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
            +PQ KKDDQKAVD+AL+K+IEAV +LKTYL ARFSLK  MKPHELVF
Sbjct: 186 EIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Lsi01G018790 vs. ExPASy Swiss-Prot
Match: P34091 (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 2.4e-98
Identity = 184/224 (82.14%), Postives = 199/224 (88.84%), Query Frame = 0


Query: 8   VSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSPKFYPADD 67
           VSRNP+L+RG+GKYSRSKMYHKRGLWAIKAKNGGVFP+H  K       EK PKFYPADD
Sbjct: 11  VSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADD 70

Query: 68  VKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGPFKFNGV 127
           VKKPL+NKRK KPTKLR+SITPGTVLIIL GRFKGKRVVFLKQL SGLLLVTGPFK NGV
Sbjct: 71  VKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGV 130

Query: 128 PLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKSALPQ 187
           PLRRVNQ+YVIATSTKVDI+GVNVEKFDDKYF K+ +KK KKGEGEFFEAEK+E + LPQ
Sbjct: 131 PLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQ 190

Query: 188 DKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           +KKDDQKAVD ALLK+IE V +LK YL ARFSLKA MKPHELVF
Sbjct: 191 EKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234

[Close]

BLAST of Lsi01G018790 vs. ExPASy Swiss-Prot
Match: P21533 (60S ribosomal protein L6 OS=Rattus norvegicus OX=10116 GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 187.6 bits (475), Expect = 1.6e-46
Identity = 121/249 (48.59%), Postives = 155/249 (62.25%), Query Frame = 0


Query: 9   SRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAD--------------- 68
           SRNP L+RG+G+YSRS MY ++ L+  K K      + + K K +               
Sbjct: 54  SRNPVLVRGIGRYSRSAMYSRKALY--KRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKN 113

Query: 69  -----APAEKSPKFYPADDVKKPLVNKRKAKP-----TKLRSSITPGTVLIILTGRFKGK 128
                    K P++YP +DV + L++  K KP      +LRSSITPGTVLIILTGR +GK
Sbjct: 114 GGTRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGK 173

Query: 129 RVVFLKQLPSGLLLVTGPFKFNGVPLRRVNQSYVIATSTKVDIAGVNVEK-FDDKYFSKE 188
           RVVFLKQL SGLLLVTGP   N VPLRR +Q +VIATSTKVDI+ V + K   D YF K+
Sbjct: 174 RVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK 233

Query: 189 VQKKKKKGEGEFFEAEKEEKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKA 232
             +K +  EGE F+ EK EK  + + +K DQKAVDS +L  I+AV  L+ YL ++FSL  
Sbjct: 234 PLRKPRHQEGEIFDTEK-EKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTN 293

[Close]

BLAST of Lsi01G018790 vs. ExPASy TrEMBL
Match: A0A6J1F5G0 (60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111442321 PE=3 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.1e-117
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PK DAPAEK P
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFK NGVPLRRVNQSYVIATSTKVD+AGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDLAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           EKSALPQDKKDDQKAVDSALLKSIEAV+DLKTYLAARFSLK+ MKPHELVF
Sbjct: 181 EKSALPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKSGMKPHELVF 231

[Close]

BLAST of Lsi01G018790 vs. ExPASy TrEMBL
Match: A0A0A0L9J7 (60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_3G698560 PE=3 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 5.3e-117
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKA+APAEK P
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKP+VNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFK NGVPLRRVNQSYVIATSTKVDI GV+VEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           EKSALPQDKKDDQKAVDSALLKSIEAV+DLKTYLAARFSLKA MKPHELVF
Sbjct: 181 EKSALPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Lsi01G018790 vs. ExPASy TrEMBL
Match: A0A5D3CKB9 (60S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00210 PE=3 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 222/231 (96.10%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPK +APAEK P
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKPEAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKAKPTKLR+SITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFK NGVPLRRVNQSYVIATSTKVDI GVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDITGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           EKSALPQDKKDDQK VDSALLKSIEAV+DLKTYLAARFSLKA MKPHELVF
Sbjct: 181 EKSALPQDKKDDQKTVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Lsi01G018790 vs. ExPASy TrEMBL
Match: A0A1S3CFY6 (60S ribosomal protein L6 OS=Cucumis melo OX=3656 GN=LOC103500301 PE=3 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 222/231 (96.10%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPK +APAEK P
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKPEAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKAKPTKLR+SITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFK NGVPLRRVNQSYVIATSTKVDI GVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDITGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           EKSALPQDKKDDQK VDSALLKSIEAV+DLKTYLAARFSLKA MKPHELVF
Sbjct: 181 EKSALPQDKKDDQKTVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Lsi01G018790 vs. ExPASy TrEMBL
Match: A0A6J1J7G9 (60S ribosomal protein L6 OS=Cucurbita maxima OX=3661 GN=LOC111482059 PE=3 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 3.4e-116
Identity = 222/231 (96.10%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PK DAPAEK P
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFK NGVPLRRVNQSYVIATSTKVD+AGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDLAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           EKSALPQDKKDDQKAVDSALLKSIEAV+ LKTYLAARFSLK+ MKPHELVF
Sbjct: 181 EKSALPQDKKDDQKAVDSALLKSIEAVSYLKTYLAARFSLKSGMKPHELVF 231

[Close]

BLAST of Lsi01G018790 vs. NCBI nr
Match: XP_038880885.1 (60S ribosomal protein L6-1-like [Benincasa hispida])

HSP 1 Score: 432.2 bits (1110), Expect = 2.9e-117
Identity = 226/231 (97.84%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEK P
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRK KPTKLRSSITPGTVLIILTGRFKGKRVVFLKQL SGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKPKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLQSGLLLVTG 120

Query: 121 PFKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFK NGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           EKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKA MKPHELVF
Sbjct: 181 EKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Lsi01G018790 vs. NCBI nr
Match: XP_022935449.1 (60S ribosomal protein L6-1-like [Cucurbita moschata] >KAG6581596.1 60S ribosomal protein L6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 431.0 bits (1107), Expect = 6.4e-117
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PK DAPAEK P
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFK NGVPLRRVNQSYVIATSTKVD+AGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDLAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           EKSALPQDKKDDQKAVDSALLKSIEAV+DLKTYLAARFSLK+ MKPHELVF
Sbjct: 181 EKSALPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKSGMKPHELVF 231

[Close]

BLAST of Lsi01G018790 vs. NCBI nr
Match: XP_004149609.1 (60S ribosomal protein L6-2 [Cucumis sativus] >KGN58615.1 hypothetical protein Csa_001784 [Cucumis sativus])

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKA+APAEK P
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKP+VNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFK NGVPLRRVNQSYVIATSTKVDI GV+VEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           EKSALPQDKKDDQKAVDSALLKSIEAV+DLKTYLAARFSLKA MKPHELVF
Sbjct: 181 EKSALPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Lsi01G018790 vs. NCBI nr
Match: XP_008461779.1 (PREDICTED: 60S ribosomal protein L6-1-like [Cucumis melo] >KAA0048314.1 60S ribosomal protein L6-1-like [Cucumis melo var. makuwa] >TYK10659.1 60S ribosomal protein L6-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 4.1e-116
Identity = 222/231 (96.10%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPK +APAEK P
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKPEAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKAKPTKLR+SITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFK NGVPLRRVNQSYVIATSTKVDI GVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDITGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           EKSALPQDKKDDQK VDSALLKSIEAV+DLKTYLAARFSLKA MKPHELVF
Sbjct: 181 EKSALPQDKKDDQKTVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Lsi01G018790 vs. NCBI nr
Match: XP_023528566.1 (60S ribosomal protein L6-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 427.6 bits (1098), Expect = 7.0e-116
Identity = 221/231 (95.67%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60
           MAPK AR SRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PK DAPAEK P
Sbjct: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFK NGVPLRRVNQSYVIATSTKVD+AGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDLAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           EKSALPQDKKDDQKAVDSALLKSIEAV+DLKTYLAARFSLK+ MKPHELVF
Sbjct: 181 EKSALPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKSGMKPHELVF 231

[Close]

BLAST of Lsi01G018790 vs. TAIR 10
Match: AT1G74060.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 369.0 bits (946), Expect = 2.8e-102
Identity = 188/228 (82.46%), Postives = 205/228 (89.91%), Query Frame = 0


Query: 4   KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSPKFY 63
           +TA+V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K DAP EK PKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R AKP KLR+SITPGTVLIIL GRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 FNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
            NGVPLRRVNQ+YVI TSTKVDI+GV ++KFDDKYF K  +KKKKK EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
            +PQ KKDDQKAVD+AL+K+IEAV +LKTYL ARFSLK  MKPHELVF
Sbjct: 186 EIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Lsi01G018790 vs. TAIR 10
Match: AT1G18540.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 368.2 bits (944), Expect = 4.7e-102
Identity = 186/230 (80.87%), Postives = 205/230 (89.13%), Query Frame = 0


Query: 2   APKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSPK 61
           A +T +V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+PK DAP EK  K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGP 121
           FYPA+DVKKPLVN+RK KPTKL++SITPGTVLIIL GRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 122 FKFNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEE 181
           FK NGVPLRRVNQ+YVI TSTK+DI+GVN EKFDDKYF K  +KKKKK EGEFFEAEKEE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEE 183

Query: 182 KSALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
           K  +PQ+KK+DQK VD+AL+KSIEAV +LK YL ARFSL   MKPHELVF
Sbjct: 184 KKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

[Close]

BLAST of Lsi01G018790 vs. TAIR 10
Match: AT1G74050.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 368.2 bits (944), Expect = 4.7e-102
Identity = 188/228 (82.46%), Postives = 205/228 (89.91%), Query Frame = 0


Query: 4   KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSPKFY 63
           +T +V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K DAP EK PKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R AKPTKLR+SITPGTVLIIL GRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 FNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
            NGVPLRRVNQ+YVI TSTKVDI+GV ++KFDDKYF K  +KKKKK EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPQDKKDDQKAVDSALLKSIEAVADLKTYLAARFSLKASMKPHELVF 232
            +PQ KKDDQKAVD+AL+K+IEAV +LKTYL ARFSLK  MKPHELVF
Sbjct: 186 EIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

The following BLAST results are available for this feature:

BLAST of Lsi01G018790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9C6	3.9e-101	82.46	60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1	[more]
Q9FZ76	6.6e-101	80.87	60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1	[more]
Q9C9C5	6.6e-101	82.46	60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1	[more]
P34091	2.4e-98	82.14	60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 S...	[more]
P21533	1.6e-46	48.59	60S ribosomal protein L6 OS=Rattus norvegicus OX=10116 GN=Rpl6 PE=1 SV=5	[more]

BLAST of Lsi01G018790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5G0	3.1e-117	96.54	60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111442321 PE=3 SV=1	[more]
A0A0A0L9J7	5.3e-117	96.54	60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_3G698560 PE=3 SV=1	[more]
A0A5D3CKB9	2.0e-116	96.10	60S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CFY6	2.0e-116	96.10	60S ribosomal protein L6 OS=Cucumis melo OX=3656 GN=LOC103500301 PE=3 SV=1	[more]
A0A6J1J7G9	3.4e-116	96.10	60S ribosomal protein L6 OS=Cucurbita maxima OX=3661 GN=LOC111482059 PE=3 SV=1	[more]

BLAST of Lsi01G018790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880885.1	2.9e-117	97.84	60S ribosomal protein L6-1-like [Benincasa hispida]	[more]
XP_022935449.1	6.4e-117	96.54	60S ribosomal protein L6-1-like [Cucurbita moschata] >KAG6581596.1 60S ribosomal...	[more]
XP_004149609.1	1.1e-116	96.54	60S ribosomal protein L6-2 [Cucumis sativus] >KGN58615.1 hypothetical protein Cs...	[more]
XP_008461779.1	4.1e-116	96.10	PREDICTED: 60S ribosomal protein L6-1-like [Cucumis melo] >KAA0048314.1 60S ribo...	[more]
XP_023528566.1	7.0e-116	95.67	60S ribosomal protein L6-1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi01G018790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74060.1	2.8e-102	82.46	Ribosomal protein L6 family protein	[more]
AT1G18540.1	4.7e-102	80.87	Ribosomal protein L6 family protein	[more]
AT1G74050.1	4.7e-102	82.46	Ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000915	60S ribosomal protein L6E	PFAM	PF01159	Ribosomal_L6e	coord: 124..231 e-value: 8.1E-39 score: 132.7
IPR000915	60S ribosomal protein L6E	PANTHER	PTHR10715	60S RIBOSOMAL PROTEIN L6	coord: 1..231
IPR000915	60S ribosomal protein L6E	PROSITE	PS01170	RIBOSOMAL_L6E	coord: 125..143
IPR005568	Ribosomal protein L6, N-terminal	PFAM	PF03868	Ribosomal_L6e_N	coord: 4..58 e-value: 6.7E-16 score: 58.3
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 85..169 e-value: 1.3E-16 score: 62.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..66
None	No IPR available	PANTHER	PTHR10715:SF9	60S RIBOSOMAL PROTEIN L6	coord: 1..231
IPR041997	Ribosomal Protein L6, KOW domain	CDD	cd13156	KOW_RPL6	coord: 79..231 e-value: 2.77392E-78 score: 230.513
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 84..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018790.1	Lsi01G018790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome