Lsi01G018760 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGAAATTCTATATTAATAAGAAGACGAACAGTAATCGAGTGTTTATACCACCGAAATTCCTCACAATAGCTTGGGGTAATGATACCCGATACTGGAAATGGGTACTCCTTGAAGAGTGGGGGTATGATCTTAACTCTATATTTTCTTTGTTCATTGATTTAAAATTTTTGTTGCAAACCAAAATCATTACATAATACATGTTTAGGTTTGACTATGAATGAGCTTGATCCTTTTTTTCATTAAGAGGTTGTCGGGTATAGTTTTGAAGAAAAGTTTTATCCCTATACTTAATTGGATTTTTCTTTTTTTTGGGAAGGAAAATTCGTTTTTGGTCCATAAGTTTTGGGTCTAATATATGTCTATTTGACCCCTAAATTTTAAAATGTTACACATTTAATTCTTATTTGGTCCCCAAAATTTAAAATATTACACATTTAGTTCTTAAGTTTTGAGTTTGACTTCAATTTAGTCCATAGGTTTCAGAATGTTACAGTTTTACTATTGAGATTTTAGTTTTGTTTCAATTTGGTCCTTAGGTTTCAATATTTACAATTTTAACCTCAAATTTTGTTAAATAATCACACCCAATCATTGGTATTAATGTTGATTAATTAATTTTAAATAATTATAAAGTGAAATTTTAAATTTAATTCTAATAGTGATGGAAAAATAGTGAAACTTAATTAATTATAATTTTTATGATTATTTTAAACTAATTTATAAAATTAAATACGAAAAATAAATATTTATTGAAAAATCGAGGCTAAAAGTGTGTAGATCTTGAAACCTAGGGATGAAATTGAAACAAATACAAATCTAAAAGATAAAATTGTAAAATTTTGAAACCTAAGAACTTAATTGAAACAAAACTCAAAACATGAGGACTAAATGTGTAACATTTAGAAATAGGGACGAAATAGAAACTAGACCCCACACCTAAGATCCAAAAATATAGCTTTCGAAAAAATTTAATAGACCAAACTCAAAACATTATATATATGCACGATAACTCCTAACTAATTTGAGATTAGTTTCATTGGTTAAGACATTATATCAACAACCATCTGATTATGTTGTCTAAAAACGTGCAGTAAGAGTGTGGTCCTTGCTCAACTTATAATGGTAAGTTGGTTCGATGTTAGTGGAACAGTGAGGACATCTTTGCTCTCACCAAATGTATTATATTTAATAACATTTGTGGCATTGTTCACTAAGAATCCCACCGGATGGAATGGTCCTGTGAACGTGGTACTAAAGAAGCCAGATGGGAGCATAATAGAGAGCACAGTAAGCCTAGTGGGGAAGCCAGTAGGAGAGTATTTCGAGATAGATGTGGGGGAACTCACACTTGATAACCACGGATGCCGCGGTGAGGGCGTGATCGAGGGTCGCATATATGAACACGGAACTCAATGGAAAACTGGGTTGATCATGAAAGGTCTTCTGGCTCGATCAAAGGCCTCAGAAGGCTGCCCCCATGCTGATGGCTAGTAGTTGTTGTCTAGTACTTGTAACTCAAAGAAGGAGAGGCACACAACTACGTTTTCTAATAATATATATATATATATATATATATATATATATATATAATAGTATGTAATAATAGCATACAAAGATAAATAATATAGACCGTTTGTATACTAGCAAGACGGTTATGTTTTATATATATATATATATATATATAATAGTATGTAATAATAGCATACAAAGATAAATAATATAGACCGTTTGTATACTAGCAAGACGGTTATGTTTC ATGCAGAAATTCTATATTAATAAGAAGACGAACAGTAATCGAGTGTTTATACCACCGAAATTCCTCACAATAGCTTGGGGTAATGATACCCGATACTGGAAATGGGTACTCCTTGAAGAGTGGGGTAAGAGTGTGGTCCTTGCTCAACTTATAATGGTAAGTTGGTTCGATGTTAGTGGAACAGTGAGGACATCTTTGCTCTCACCAAATGTATTATATTTAATAACATTTGTGGCATTGTTCACTAAGAATCCCACCGGATGGAATGGTCCTGTGAACGTGGTACTAAAGAAGCCAGATGGGAGCATAATAGAGAGCACAGTAAGCCTAGTGGGGAAGCCAGTAGGAGAGTATTTCGAGATAGATGTGGGGGAACTCACACTTGATAACCACGGATGCCGCGGTGAGGGCGTGATCGAGGGTCGCATATATGAACACGGAACTCAATGGAAAACTGGGTTGATCATGAAAGGTCTTCTGGCTCGATCAAAGGCCTCAGAAGGCTGCCCCCATGCTGATGGCTAGTAGTTGTTGTCTAGTACTTGTAACTCAAAGAAGGAGAGGCACACAACTACGTTTTCTAATAATATATATATATATATATATATATATATATATATATAATAGTATGTAATAATAGCATACAAAGATAAATAATATAGACCGTTTGTATACTAGCAAGACGGTTATGTTTTATATATATATATATATATATATAATAGTATGTAATAATAGCATACAAAGATAAATAATATAGACCGTTTGTATACTAGCAAGACGGTTATGTTTC ATGCAGAAATTCTATATTAATAAGAAGACGAACAGTAATCGAGTGTTTATACCACCGAAATTCCTCACAATAGCTTGGGGTAATGATACCCGATACTGGAAATGGGTACTCCTTGAAGAGTGGGGTAAGAGTGTGGTCCTTGCTCAACTTATAATGGTAAGTTGGTTCGATGTTAGTGGAACAGTGAGGACATCTTTGCTCTCACCAAATGTATTATATTTAATAACATTTGTGGCATTGTTCACTAAGAATCCCACCGGATGGAATGGTCCTGTGAACGTGGTACTAAAGAAGCCAGATGGGAGCATAATAGAGAGCACAGTAAGCCTAGTGGGGAAGCCAGTAGGAGAGTATTTCGAGATAGATGTGGGGGAACTCACACTTGATAACCACGGATGCCGCGGTGAGGGCGTGATCGAGGGTCGCATATATGAACACGGAACTCAATGGAAAACTGGGTTGATCATGAAAGGTCTTCTGGCTCGATCAAAGGCCTCAGAAGGCTGCCCCCATGCTGATGGCTAG MQKFYINKKTNSNRVFIPPKFLTIAWGNDTRYWKWVLLEEWGKSVVLAQLIMVSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKTGLIMKGLLARSKASEGCPHADG Homology
BLAST of Lsi01G018760 vs. ExPASy Swiss-Prot
Match: C0HJV2 (Lectin OS=Luffa acutangula OX=56866 PE=1 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 5.8e-25 Identity = 63/165 (38.18%), Postives = 94/165 (56.97%), Query Frame = 0
BLAST of Lsi01G018760 vs. ExPASy Swiss-Prot
Match: P0DSP5 (Lectin OS=Coccinia grandis OX=387127 PE=1 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 9.7e-20 Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 0
BLAST of Lsi01G018760 vs. ExPASy Swiss-Prot
Match: Q949S5 (F-box protein PP2-B11 OS=Arabidopsis thaliana OX=3702 GN=PP2B11 PE=1 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 7.4e-12 Identity = 52/176 (29.55%), Postives = 84/176 (47.73%), Query Frame = 0
BLAST of Lsi01G018760 vs. ExPASy Swiss-Prot
Match: Q9C8U9 (Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 OS=Arabidopsis thaliana OX=3702 GN=PP2A4 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09 Identity = 48/149 (32.21%), Postives = 65/149 (43.62%), Query Frame = 0
BLAST of Lsi01G018760 vs. ExPASy Swiss-Prot
Match: Q9FHE5 (Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis thaliana OX=3702 GN=PP2A7 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 6.5e-08 Identity = 45/165 (27.27%), Postives = 72/165 (43.64%), Query Frame = 0
BLAST of Lsi01G018760 vs. ExPASy TrEMBL
Match: A0A0A0M183 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G703060 PE=4 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 9.3e-34 Identity = 72/167 (43.11%), Postives = 105/167 (62.87%), Query Frame = 0
BLAST of Lsi01G018760 vs. ExPASy TrEMBL
Match: A0A5D3C6S9 (Protein PHLOEM PROTEIN 2-LIKE A1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002890 PE=4 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 3.6e-33 Identity = 71/165 (43.03%), Postives = 103/165 (62.42%), Query Frame = 0
BLAST of Lsi01G018760 vs. ExPASy TrEMBL
Match: Q39461 (Phloem protein 2 OS=Cucurbita argyrosperma OX=34294 GN=PP2 PE=2 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 4.6e-33 Identity = 75/167 (44.91%), Postives = 102/167 (61.08%), Query Frame = 0
BLAST of Lsi01G018760 vs. ExPASy TrEMBL
Match: Q8LK67 (Phloem lectin OS=Cucurbita argyrosperma subsp. sororia OX=37648 GN=PP2 PE=2 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 4.6e-33 Identity = 75/167 (44.91%), Postives = 101/167 (60.48%), Query Frame = 0
BLAST of Lsi01G018760 vs. ExPASy TrEMBL
Match: A0A1S3C1Q4 (protein PHLOEM PROTEIN 2-LIKE A1-like OS=Cucumis melo OX=3656 GN=LOC103495460 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 1.0e-32 Identity = 70/165 (42.42%), Postives = 103/165 (62.42%), Query Frame = 0
BLAST of Lsi01G018760 vs. NCBI nr
Match: WP_219729244.1 (PP2 domain-containing protein, partial [Pectobacterium odoriferum] >POE05059.1 hypothetical protein BV921_23310, partial [Pectobacterium odoriferum]) HSP 1 Score: 240.0 bits (611), Expect = 1.6e-59 Identity = 108/172 (62.79%), Postives = 135/172 (78.49%), Query Frame = 0
BLAST of Lsi01G018760 vs. NCBI nr
Match: WP_181002512.1 (PP2 domain-containing protein, partial [Pectobacterium odoriferum] >POE16080.1 hypothetical protein BV923_23560, partial [Pectobacterium odoriferum]) HSP 1 Score: 238.8 bits (608), Expect = 3.5e-59 Identity = 107/172 (62.21%), Postives = 135/172 (78.49%), Query Frame = 0
BLAST of Lsi01G018760 vs. NCBI nr
Match: XP_038893562.1 (lectin-like [Benincasa hispida]) HSP 1 Score: 208.0 bits (528), Expect = 6.6e-50 Identity = 93/170 (54.71%), Postives = 124/170 (72.94%), Query Frame = 0
BLAST of Lsi01G018760 vs. NCBI nr
Match: XP_004145448.1 (lectin [Cucumis sativus] >KGN66882.1 hypothetical protein Csa_007569 [Cucumis sativus]) HSP 1 Score: 153.3 bits (386), Expect = 1.9e-33 Identity = 72/167 (43.11%), Postives = 105/167 (62.87%), Query Frame = 0
BLAST of Lsi01G018760 vs. NCBI nr
Match: KAG6583766.1 (hypothetical protein SDJN03_19698, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 152.9 bits (385), Expect = 2.5e-33 Identity = 76/167 (45.51%), Postives = 102/167 (61.08%), Query Frame = 0
BLAST of Lsi01G018760 vs. TAIR 10
Match: AT1G80110.1 (phloem protein 2-B11 ) HSP 1 Score: 72.0 bits (175), Expect = 5.3e-13 Identity = 52/176 (29.55%), Postives = 84/176 (47.73%), Query Frame = 0
BLAST of Lsi01G018760 vs. TAIR 10
Match: AT1G33920.1 (phloem protein 2-A4 ) HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10 Identity = 48/149 (32.21%), Postives = 65/149 (43.62%), Query Frame = 0
BLAST of Lsi01G018760 vs. TAIR 10
Match: AT5G45090.1 (phloem protein 2-A7 ) HSP 1 Score: 58.9 bits (141), Expect = 4.6e-09 Identity = 45/165 (27.27%), Postives = 72/165 (43.64%), Query Frame = 0
BLAST of Lsi01G018760 vs. TAIR 10
Match: AT2G26820.1 (phloem protein 2-A3 ) HSP 1 Score: 58.5 bits (140), Expect = 6.0e-09 Identity = 47/151 (31.13%), Postives = 74/151 (49.01%), Query Frame = 0
BLAST of Lsi01G018760 vs. TAIR 10
Match: AT2G02240.1 (F-box family protein ) HSP 1 Score: 54.3 bits (129), Expect = 1.1e-07 Identity = 43/185 (23.24%), Postives = 79/185 (42.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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